mRNA_H-paniculata_contig41839.10742.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig41839.10742.1 vs. uniprot
Match: R7QK84_CHOCR (Integrase catalytic domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QK84_CHOCR) HSP 1 Score: 110 bits (274), Expect = 3.800e-24 Identity = 72/226 (31.86%), Postives = 113/226 (50.00%), Query Frame = 1
Query: 22 WTIDSGCTGHHLTPQRDLFQNVRQVVRSPIATAGKGELNVEGQGDVESLIWAAEGAMRIIFSNVLYVPEASDSILSVERMVSQGMEGYFVGDEVDIQAAKRAIGKQVKFLRLFSNDCTTPKNNEKRQQMVDTKLLHERLEHVRDLPTVARQ------QGIRLSGKLGVCSACEKGKASKQPVKKYRE----ERTLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSR 666
W +DSGC+ H +T R LF Q+ + K NV G+G+VE ++ SNVL+VP+ S+LSV +MVS+G++ F ++ + A + + L+ D N +V + LHER+ HV ++ +A GI +C AC GKA++ + K R + L+LVH+D+ GP++ +S GG R+ I FVDD+S
Sbjct: 275 WLVDSGCSAH-ITFDRSLFVTYEQMQSGSVEMGTKARANVAGRGEVEFMLNVNGSPHPCKLSNVLHVPDFGYSLLSVSQMVSKGLQVSFENEKCRVTAGPTVVATASQVGDLYILDVM---NETFSAHVVTLQTLHERMAHV-NVQGIASMIHNNVVNGINSDNHSPICPACVFGKATRSVIPKQRSSSRAQNCLDLVHSDVCGPLEVQSIGGSRYFITFVDDHSN 495
BLAST of mRNA_H-paniculata_contig41839.10742.1 vs. uniprot
Match: R7QG27_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG27_CHOCR) HSP 1 Score: 108 bits (271), Expect = 4.390e-24 Identity = 72/226 (31.86%), Postives = 113/226 (50.00%), Query Frame = 1
Query: 22 WTIDSGCTGHHLTPQRDLFQNVRQVVRSPIATAGKGELNVEGQGDVESLIWAAEGAMRIIFSNVLYVPEASDSILSVERMVSQGMEGYFVGDEVDIQAAKRAIGKQVKFLRLFSNDCTTPKNNEKRQQMVDTKLLHERLEHVRDLPTVARQ------QGIRLSGKLGVCSACEKGKASKQPVKKYRE----ERTLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSR 666
W +DSGC+ H +T R LF Q+ + K NV G+G+VE ++ SNVL+VP+ S+LSV +MVS+G++ F ++ + A + + L+ D N +V + LHER+ HV ++ +A GI +C AC GKA++ + K R + L+LVH+D+ GP++ +S GG R+ I FVDD+S
Sbjct: 60 WLVDSGCSAH-ITFDRSLFVTYEQMQSGSVEMGTKARANVAGRGEVEFMLNVNGSPHPCKLSNVLHVPDFGYSLLSVSQMVSKGLQVSFENEKCRVTAGPIVVATASQVGDLYILDVM---NETFSAHVVTLQTLHERMAHV-NVQGIASMIHNNVVSGINSDNHSPICPACVFGKATRSVIPKQRSWSRAQNCLDLVHSDVCGPLEVQSVGGSRYFITFVDDHSN 280
BLAST of mRNA_H-paniculata_contig41839.10742.1 vs. uniprot
Match: R7QCG5_CHOCR (gag_pre-integrs domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCG5_CHOCR) HSP 1 Score: 108 bits (269), Expect = 1.340e-23 Identity = 72/227 (31.72%), Postives = 114/227 (50.22%), Query Frame = 1
Query: 22 WTIDSGCTGHHLTPQRDLFQNVRQVVRSPIATAGKGELNVEGQGDVESLIWAAEGAMRIIFSNVLYVPEASDSILSVERMVSQGMEGYFVGDEVDIQAAKRAIGKQVKFLRLFSNDCTTPKNNEKRQQMVDTKLLHERLEHVRDLPTVARQ------QGIRLSGKLGVCSACEKGKASKQPVKKYRE----ERTLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRM 669
W +DSGC+ H +T R LF ++ + K NV G+G+VE ++ SNVL+VP+ S+LSV ++VS+G++ F D+ + A + + LF D N +V + LHER+ HV ++ +A GI +C AC GKA++ + K R + L+LVH+D+ GP++ +S GG R+ I FVDD+S +
Sbjct: 295 WLVDSGCSAH-ITFDRSLFVTYEEMQSGSVEMGTKARANVAGRGEVEFMLNVNGSPHPCKLSNVLHVPDFGYSLLSVSQIVSKGLQVSFEKDKCIVTAGPTVVATASQVGDLFILDVM---NETFSAHVVTLQTLHERMAHV-NVQGIASMIHNNVVSGINSDNHSLLCPACVFGKATRSVIPKQRSSSRAQNCLDLVHSDVCGPLEVQSIGGSRYFITFVDDHSNL 516
BLAST of mRNA_H-paniculata_contig41839.10742.1 vs. uniprot
Match: R7QJV2_CHOCR (Integrase catalytic domain-containing protein n=3 Tax=Chondrus crispus TaxID=2769 RepID=R7QJV2_CHOCR) HSP 1 Score: 108 bits (270), Expect = 1.450e-23 Identity = 72/226 (31.86%), Postives = 112/226 (49.56%), Query Frame = 1
Query: 22 WTIDSGCTGHHLTPQRDLFQNVRQVVRSPIATAGKGELNVEGQGDVESLIWAAEGAMRIIFSNVLYVPEASDSILSVERMVSQGMEGYFVGDEVDIQAAKRAIGKQVKFLRLFSNDCTTPKNNEKRQQMVDTKLLHERLEHVRDLPTVARQ------QGIRLSGKLGVCSACEKGKASKQPVKKYRE----ERTLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSR 666
W +DSGC+ H +T R LF Q+ + K NV G+G+VE ++ SNVL+VP+ S+LSV +MVS+G++ F ++ + A + L+ D N +V + LHER+ HV ++ +A GI +C AC GKA++ + K R + L+LVH+D+ GP++ +S GG R+ I FVDD+S
Sbjct: 275 WLVDSGCSAH-ITFDRSLFVTYEQMQSGSVEMGTKARANVAGRGEVEFMLNVNGSPHPCKLSNVLHVPDFGYSLLSVSQMVSKGLQVSFENEKCCVTAGPTVVATASLVGDLYILDVM---NETFSAHVVTLQTLHERMAHV-NVQGIASMIHNNVVSGINSDNHSPICPACVFGKATRSVIPKQRSSSRAQNCLDLVHSDVCGPLEVQSIGGSRYFITFVDDHSN 495
BLAST of mRNA_H-paniculata_contig41839.10742.1 vs. uniprot
Match: R7QC71_CHOCR (Integrase catalytic domain-containing protein n=4 Tax=Chondrus crispus TaxID=2769 RepID=R7QC71_CHOCR) HSP 1 Score: 108 bits (269), Expect = 1.690e-23 Identity = 73/226 (32.30%), Postives = 113/226 (50.00%), Query Frame = 1
Query: 22 WTIDSGCTGHHLTPQRDLFQNVRQVVRSPIATAGKGELNVEGQGDVESLIWAAEGAMRIIFSNVLYVPEASDSILSVERMVSQGMEGYFVGDEVDIQAAKRAIGKQVKFLRLFSNDCTTPKNNEKRQQMVDTKLLHERLEHVRDLPTVARQ------QGIRLSGKLGVCSACEKGKASKQPVKKYRE----ERTLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSR 666
W +DSGC+ H +T R LF Q+ + K NV G+G+VE ++ SNVL+VP+ S+LSV ++VS+G++ F ++ + A + + LF D N +V + LHER+ HV ++ +A GI VC AC GKA++ + K R + L+LVH+D+ GP++ +S GG R+ I FVDD+S
Sbjct: 224 WLVDSGCSAH-ITFDRSLFVTYEQMQSGSVEMGTKARANVAGRGEVEFMLNVNGSPHPCKLSNVLHVPDFGYSLLSVSQIVSKGLQVSFENEKCLVTAGPTLVATASQVGDLFILDVM---NETFSAHVVTLQTLHERMAHV-NVQGIASMIHNNVVSGINSDNHSLVCPACVFGKATRSVIPKQRSSSRAQNCLDLVHSDVCGPLEVQSIGGSRYFITFVDDHSN 444
BLAST of mRNA_H-paniculata_contig41839.10742.1 vs. uniprot
Match: A0A151QUV8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QUV8_CAJCA) HSP 1 Score: 102 bits (254), Expect = 2.110e-21 Identity = 71/231 (30.74%), Postives = 123/231 (53.25%), Query Frame = 1
Query: 22 WTIDSGCTGHHLTPQRDLFQNVRQVVRSPIATAGKGELNVEGQGDVESLIWAAEGAMRI-IFSNVLYVPEASDSILSVERMVSQGMEGYFVGDEVDIQAAKRAIGKQVKFLRL----FSNDCTTPKNNEKRQQMVDTKLLHERLEHVRDLPTVARQQGIRLSGKLGV------CSACEKGKASKQPV---KKYREERTLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRM 669
W IDSGCT +H++ R+LF+ + + S + + V+G+G V A EG + + S+VLYVPE + ++LSV +++ +G + F I K + GK+V +R+ F+ D + ++ +++ +T L H+RL H + ++ + G + C AC+ GK ++ P K +R + L+L+HTD+ GP+ S G R+ IIF+DD +RM
Sbjct: 284 WLIDSGCT-NHMSYDRELFKELDKTALSKVRVGNGAYIAVKGKGTV-----AIEGQTGLKLISDVLYVPEINQNLLSVPQLLEKGYKVLFEDKNCII---KDSAGKEVFKVRMKGKSFALDFMSEEHAAVHKEVSNTILWHKRLGHFHHSALIFMKKNNMVRGLSDIEEESPTCIACQYGKQTRLPFPQNKTWRAIQNLQLIHTDVGGPMSTPSLNGSRYYIIFIDDMTRM 505
BLAST of mRNA_H-paniculata_contig41839.10742.1 vs. uniprot
Match: A0A2K3NI74_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NI74_TRIPR) HSP 1 Score: 101 bits (251), Expect = 5.050e-21 Identity = 74/238 (31.09%), Postives = 127/238 (53.36%), Query Frame = 1
Query: 1 SSKSHVHWTIDSGCTGHHLTPQRDLFQNVRQVVRSPIATAGKGELNVEGQGDVESLIWAAEGAMRI-IFSNVLYVPEASDSILSVERMVSQGMEGYFVGDEVDIQAAKRAIGKQVKFLRL----FSNDCTTPKNNEKRQQMVDTKLLHERLEHVRDLPTVARQQGIRLSG--KLGV----CSACEKGKASKQPVKK---YREERTLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRM 669
S+ S W IDSGCT +H+T R+LF+ + + V S + + V+G+G V A EG + + S+VL+VPE + ++LSV +++ +G + +F I K + G++V +++ F+ D + +++ T L H+RL H + ++ ++ KL V C AC+ GK + P ++ +R + L+LVHTD+ GP+ S G ++ I F+DDYSRM
Sbjct: 324 SNYSTESWLIDSGCT-NHMTYDRELFRELDENVLSKVKIGNGAYIEVKGKGTV-----AIEGHTGLKLISDVLFVPEINQNLLSVPQLLEKGYKVFFEDKNCMI---KDSEGREVFKIQMKGKSFALDFMNKEQAAMHKEVSSTMLWHKRLGHFHHAALIFMKKNNLVNDLPKLEVMPPECIACQYGKQKRLPFQQNNTWRATQKLQLVHTDVGGPMKTPSLNGSKYYIAFIDDYSRM 552
BLAST of mRNA_H-paniculata_contig41839.10742.1 vs. uniprot
Match: A0A1Y1NAZ7_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1NAZ7_PHOPY) HSP 1 Score: 100 bits (250), Expect = 6.520e-21 Identity = 74/226 (32.74%), Postives = 114/226 (50.44%), Query Frame = 1
Query: 22 WTIDSGCTGHHLTPQRDLFQNVRQVVRSPIATAGKGELNVEGQGDVESLIWAAEGAMRIIFSNVLYVPEASDSILSVERMVSQGMEGYFVGDEVDIQAAKRAIGKQVKFLRLFSN--DCTTPKNNEKRQQMVDTKLLHERLEHVRDL---PTVARQQGIRLSGKLGV--CSACEKGKASKQ--PVKKYREERTLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRM 669
W IDSG + HLT ++ +NV + S I A + L VE GDVE AA+ R++ NV YVP + ++LSV +++S G + F + ++ K G V L +N P NN + + + H RL H+ + T +G+ G+ V C C +GK ++ P K R L+++H+DI GP++ S GG R+ + F+DDYSRM
Sbjct: 44 WYIDSGAS-IHLTANKEWLKNVSKPYLSDIVAANQSRLVVECSGDVEIETVAADLQYRVLLKNVQYVPGLTTNLLSVSQLISNGNQVCFDNNGCEVYNPK---GILVATASLNNNVYKLNVP-NNGAGCLLASSNVWHRRLGHINNSYLNKTSKLVEGLVYKGRANVSNCQVCCQGKQTRTSFPNKGSRANGVLQVIHSDICGPMETVSLGGARYFLTFIDDYSRM 264
BLAST of mRNA_H-paniculata_contig41839.10742.1 vs. uniprot
Match: A0A1Y1N668_PHOPY (Uncharacterized protein (Fragment) n=3 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N668_PHOPY) HSP 1 Score: 100 bits (250), Expect = 6.920e-21 Identity = 74/226 (32.74%), Postives = 114/226 (50.44%), Query Frame = 1
Query: 22 WTIDSGCTGHHLTPQRDLFQNVRQVVRSPIATAGKGELNVEGQGDVESLIWAAEGAMRIIFSNVLYVPEASDSILSVERMVSQGMEGYFVGDEVDIQAAKRAIGKQVKFLRLFSN--DCTTPKNNEKRQQMVDTKLLHERLEHVRDL---PTVARQQGIRLSGKLGV--CSACEKGKASKQ--PVKKYREERTLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRM 669
W IDSG + HLT ++ +NV + S I A + L VE GDVE AA+ R++ NV YVP + ++LSV +++S G + F + ++ K G V L +N P NN + + + H RL H+ + T +G+ G+ V C C +GK ++ P K R L+++H+DI GP++ S GG R+ + F+DDYSRM
Sbjct: 277 WYIDSGAS-IHLTANKEWLKNVSKPYLSDIVAANQSRLVVECSGDVEIETVAADLQYRVLLKNVQYVPGLTTNLLSVSQLISNGNQVCFDNNGCEVYNPK---GILVATASLNNNVYKLNVP-NNGAGCLLASSNVWHRRLGHINNSYLNKTSKLVEGLVYKGRANVSNCQVCCQGKQTRTSFPNKGSRANGVLQVIHSDICGPMETVSLGGARYFLTFIDDYSRM 497
BLAST of mRNA_H-paniculata_contig41839.10742.1 vs. uniprot
Match: A0A438JT24_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JT24_VITVI) HSP 1 Score: 100 bits (250), Expect = 7.120e-21 Identity = 76/238 (31.93%), Postives = 124/238 (52.10%), Query Frame = 1
Query: 1 SSKSHVHWTIDSGCTGHHLTPQRDLFQNVRQVVRSPIATAGKGELNVEGQGDVESLIWAAEGAMRI-IFSNVLYVPEASDSILSVERMVSQGMEGYFVGDEVDIQAAKRAIGKQVKFLRL----FSNDCTTPKNNEKRQQMVDTKLLHERLEHVRDLPTVARQ-----QGI-RLSGKLGVCSACEKGKASKQPV---KKYREERTLELVHTDIAGPV-DKSFGGCRFAIIFVDDYSRM 669
+S S W IDSGCT +H+T + LF+ + + V S + L V+G+G V A EG + + SNVLYVPE + ++LSV +++ +G + F ++ I A+ G++V +++ F+ D + ++ +T L H RL H + + +G+ L K C AC+ GK ++ P K +R + L+LVHTD+ GP S G +F I F+DD++RM
Sbjct: 279 TSSSPETWLIDSGCT-NHMTYDQGLFKELDKTVTSKVRIGNGAYLAVKGKGTV-----AIEGHTGLKLISNVLYVPEINQNLLSVGQLLEKGYKVLFEDNQCMIADAQ---GREVFIVQMKGKGFALDLMQEEQTAIHKEESNTMLWHRRLGHFHHSALLFMKKNDLGEGLPELEVKPPTCVACQYGKQTRLPFPQNKAWRATQKLQLVHTDVGGPQRTPSLNGSKFYIAFIDDHTRM 507 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41839.10742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig41839.10742.1 >prot_H-paniculata_contig41839.10742.1 ID=prot_H-paniculata_contig41839.10742.1|Name=mRNA_H-paniculata_contig41839.10742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp SSKSHVHWTIDSGCTGHHLTPQRDLFQNVRQVVRSPIATAGKGELNVEGQback to top mRNA from alignment at H-paniculata_contig41839:401..1156- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig41839.10742.1 ID=mRNA_H-paniculata_contig41839.10742.1|Name=mRNA_H-paniculata_contig41839.10742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=756bp|location=Sequence derived from alignment at H-paniculata_contig41839:401..1156- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig41839:401..1156- >mRNA_H-paniculata_contig41839.10742.1 ID=mRNA_H-paniculata_contig41839.10742.1|Name=mRNA_H-paniculata_contig41839.10742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig41839:401..1156- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |