mRNA_H-paniculata_contig41815.10736.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41815.10736.1
Unique NamemRNA_H-paniculata_contig41815.10736.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41815.10736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41815contigH-paniculata_contig41815:122..1721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1602
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930272.8382077-CDS-H-paniculata_contig41815:121..5471622930272.8382077-CDS-H-paniculata_contig41815:121..547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41815 122..547 +
1691481219.8569343-CDS-H-paniculata_contig41815:121..5471691481219.8569343-CDS-H-paniculata_contig41815:121..547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41815 122..547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930272.8554707-UTR-H-paniculata_contig41815:547..17211622930272.8554707-UTR-H-paniculata_contig41815:547..1721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41815 548..1721 +
1691481219.8693302-UTR-H-paniculata_contig41815:547..17211691481219.8693302-UTR-H-paniculata_contig41815:547..1721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41815 548..1721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41815.10736.1prot_H-paniculata_contig41815.10736.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41815 122..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41815.10736.1

>prot_H-paniculata_contig41815.10736.1 ID=prot_H-paniculata_contig41815.10736.1|Name=mRNA_H-paniculata_contig41815.10736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
QVNAVCIGIEHYLVKRRRRSGRGGAVTKESASSALQGVDGNREARREEVE
ENIVITTCRDHDPPTPAVQQESHDDHLCQLCESTRRVLRFAQAHVSVAHD
VHGCEACRMWSLVKARYVYLRCVRTATSAGMLESFGLVAAG*
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mRNA from alignment at H-paniculata_contig41815:122..1721+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41815.10736.1 ID=mRNA_H-paniculata_contig41815.10736.1|Name=mRNA_H-paniculata_contig41815.10736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1600bp|location=Sequence derived from alignment at H-paniculata_contig41815:122..1721+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTAAACGCTGTCTGTATCGGCATTGAGCACTACTTGGTGAAGCGGCG
CAGACGGTCGGGGCGAGGAGGAGCTGTCACCAAGGAATCAGCTTCTTCGG
CGCTCCAGGGAGTCGATGGAAATCGCGAAGCCAGACGGGAGGAAGTCGAA
GAAAATATTGTTATTACCACCTGTAGGGATCATGACCCGCCGACCCCAGC
GGTCCAACAAGAAAGCCACGATGACCACCTCTGCCAACTCTGCGAATCAA
CACGCCGCGTTCTACGCTTCGCTCAAGCTCATGTTAGCGTGGCGCATGAT
GTGCACGGTTGCGAGGCTTGCCGAATGTGGTCCTTGGTAAAAGCCCGCTA
TGTTTATCTACGCTGTGTTCGTACTGCTACTAGTGCGGGAATGTTGGAAT
CGTTCGGGTTGGTTGCGGCTGGGTAGGGGTCATATCCATTTTTAGTGTAC
ACACCCTCTTTTTTGAAGGATCAAGGTGTTGGTGACAAGTTGGCATGTTG
TTGTTGTGTGTGGCTGGGTCTGATTTCAAATCTGCGTGCAAGTTGGTACC
GTGCAAAGGTACCAGGTGCTTGTAATACGTAGCAGGTACTTGGACCGGAG
GTGTATATATGTACATCATTTGAATGACGGTATCAAGTCTCAAGTCTCGC
GTTGCTTACTTGGTTATTGGCAGGCTGAAGAAGGCCTCGCAACAAGCTGG
GACAAACAAAGCGGCCTGTCTCTCTTTTTTTTCGCCTTGTCAACGCGTTC
CTTTCAATCTGTCATATGTCAATATAGCCAACTTTTTGTAAGGGTGTGCA
TATGGGTACGAATCGTGCGCATTGGTACGTGCCTACTGTACATATTTCTT
GGGGTCTTCAGAGTCGATAAGTTGAGGTCAGCGATATGCGTGTGGGCTAC
GTACTATAGTCGTCGTGACTAAGTTGTTCATCCCCCGAATAAATACGAAT
ACTTGTAAGTGACTTTTCACAAAAAGCTAAAATTATTCGTCTGAGGTTCA
GAATGATCTCGTGTGTTATATGTGTGTGCACCCCGACCATCCACGACTGC
TGAAACAGCGGATTTTTCGAAATGAGGGTTGGATTTCAAATTGAGGTTGA
AATGGCCTGAACAAACTGGTCGTAACGCCCCGAACAGTATTGATTTCCAC
CCCCTAAAAATCGATTCCAGACAGCCATAAAGGTTCGGAGGCTTGTGGTG
ATGTATATATTTCATGCTCTCGCCGTTGCGCCCGTTGGAGAAAGCGTGGC
TGCGGGCGAGTGGGAGCGATAGGCGCATGCTGACTGCTGTTGCGGTGTGT
AACGAGGCGGACTGGCCACCCCGAGGAGCTGAGATTCGACATTCTCGTCG
CAGCTTCCCTCTGAGGATGATAACGTCCTCGCAAACAGGAGGCGACCAGC
TTCCGATATCATGGTGCAAGGAGTAAGCTCGAAGAAGTTGGGAGGGGTGA
CCTCATGCGGCGAATTAAATGAAGTTGGATAGATGCCATTTCCACCCCCT
GTATTTTCGAGGGAGGCCAAGGGTTCTAACGGGCGAAAGAGTTGAACTGC
CGAAGAGTGGAAGTAGCGGAAAGGGTTTTTTGCCTGACCTTCCGGGGGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig41815:122..1721+

>mRNA_H-paniculata_contig41815.10736.1 ID=mRNA_H-paniculata_contig41815.10736.1|Name=mRNA_H-paniculata_contig41815.10736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig41815:122..1721+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTAAACGCTGTCTGTATCGGCATTGAGCACTACTTGGTGAAGCGGCG
CAGACGGTCGGGGCGAGGAGGAGCTGTCACCAAGGAATCAGCTTCTTCGG
CGCTCCAGGGAGTCGATGGAAATCGCGAAGCCAGACGGGAGGAAGTCGAA
GAAAATATTGTTATTACCACCTGTAGGGATCATGACCCGCCGACCCCAGC
GGTCCAACAAGAAAGCCACGATGACCACCTCTGCCAACTCTGCGAATCAA
CACGCCGCGTTCTACGCTTCGCTCAAGCTCATGTTAGCGTGGCGCATGAT
GTGCACGGTTGCGAGGCTTGCCGAATGTGGTCCTTGGTAAAAGCCCGCTA
TGTTTATCTACGCTGTGTTCGTACTGCTACTAGTGCGGGAATGTTGGAAT
CGTTCGGGTTGGTTGCGGCTGGGTAGCAGGTAAACGCTGTCTGTATCGGC
ATTGAGCACTACTTGGTGAAGCGGCGCAGACGGTCGGGGCGAGGAGGAGC
TGTCACCAAGGAATCAGCTTCTTCGGCGCTCCAGGGAGTCGATGGAAATC
GCGAAGCCAGACGGGAGGAAGTCGAAGAAAATATTGTTATTACCACCTGT
AGGGATCATGACCCGCCGACCCCAGCGGTCCAACAAGAAAGCCACGATGA
CCACCTCTGCCAACTCTGCGAATCAACACGCCGCGTTCTACGCTTCGCTC
AAGCTCATGTTAGCGTGGCGCATGATGTGCACGGTTGCGAGGCTTGCCGA
ATGTGGTCCTTGGTAAAAGCCCGCTATGTTTATCTACGCTGTGTTCGTAC
TGCTACTAGTGCGGGAATGTTGGAATCGTTCGGGTTGGTTGCGGCTGGGT
AG
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