mRNA_H-paniculata_contig41793.10730.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41793.10730.1
Unique NamemRNA_H-paniculata_contig41793.10730.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41793.10730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41793contigH-paniculata_contig41793:959..1512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930272.0758412-CDS-H-paniculata_contig41793:958..10381622930272.0758412-CDS-H-paniculata_contig41793:958..1038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41793 959..1038 -
1691481219.5382435-CDS-H-paniculata_contig41793:958..10381691481219.5382435-CDS-H-paniculata_contig41793:958..1038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41793 959..1038 -
1622930272.0921087-CDS-H-paniculata_contig41793:1328..15121622930272.0921087-CDS-H-paniculata_contig41793:1328..1512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41793 1329..1512 -
1691481219.5496604-CDS-H-paniculata_contig41793:1328..15121691481219.5496604-CDS-H-paniculata_contig41793:1328..1512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41793 1329..1512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41793.10730.1prot_H-paniculata_contig41793.10730.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41793 959..1512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41793.10730.1

>prot_H-paniculata_contig41793.10730.1 ID=prot_H-paniculata_contig41793.10730.1|Name=mRNA_H-paniculata_contig41793.10730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
SGTSSTPSLSSTGDRKRANVGLRADGHQTASEVGKGLQSATPLTATPATA
SSASMTSPSPPEPFPEIPPHLRKYCVRHETLPARPPR*
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mRNA from alignment at H-paniculata_contig41793:959..1512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41793.10730.1 ID=mRNA_H-paniculata_contig41793.10730.1|Name=mRNA_H-paniculata_contig41793.10730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=554bp|location=Sequence derived from alignment at H-paniculata_contig41793:959..1512- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGACCTCGTCGACTCCGAGTCTTTCGTCGACGGGGGACCGCAAGCG
AGCAAATGTTGGTCTCAGGGCCGACGGTCACCAGACGGCGAGCGAGGTCG
GCAAGGGTCTCCAGTCGGCGACTCCTCTCACCGCCACGCCGGCAACCGCC
AGCAGCGCCTCCATGACCTCTCCATCACCGCCAGGTGCGTACGGAACCGC
CAGCGCTACTCGCAATCGACGCGTCAACAACGTGCAGCATATCCCGAACA
AAGATGTAGTAGCAGTGTCGGGCCATCGTCGTGCAGTGGCTCTAGGCGTT
TGCGCTCCGACGTGGCTGCATGTATGTACACGTAGAAACGTCGCACACAC
TCACGATATGCCTCAAGTCGTTATGATTAATAGTCGTACCCTCGCTTTTC
CCCCGCGTCTCGCCGCCCCGCCCCCGTCGTCTCGCCCGTCTTCGGACAAC
TAACACGCCTCCACCTTTCCGTAGAGCCCTTCCCCGAGATTCCGCCTCAC
CTCCGCAAATACTGCGTGAGGCACGAGACCCTCCCAGCACGGCCACCTAG
GTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig41793:959..1512-

>mRNA_H-paniculata_contig41793.10730.1 ID=mRNA_H-paniculata_contig41793.10730.1|Name=mRNA_H-paniculata_contig41793.10730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig41793:959..1512- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGACCTCGTCGACTCCGAGTCTTTCGTCGACGGGGGACCGCAAGCG
AGCAAATGTTGGTCTCAGGGCCGACGGTCACCAGACGGCGAGCGAGGTCG
GCAAGGGTCTCCAGTCGGCGACTCCTCTCACCGCCACGCCGGCAACCGCC
AGCAGCGCCTCCATGACCTCTCCATCACCGCCAGAGCGGGACCTCGTCGA
CTCCGAGTCTTTCGTCGACGGGGGACCGCAAGCGAGCAAATGTTGGTCTC
AGGGCCGACGGTCACCAGACGGCGAGCGAGGTCGGCAAGGGTCTCCAGTC
GGCGACTCCTCTCACCGCCACGCCGGCAACCGCCAGCAGCGCCTCCATGA
CCTCTCCATCACCGCCAGAGCCCTTCCCCGAGATTCCGCCTCACCTCCGC
AAATACTGCGTGAGGCACGAGACCCTCCCAGCACGGCCACCTAGGTAAAG
CCCTTCCCCGAGATTCCGCCTCACCTCCGCAAATACTGCGTGAGGCACGA
GACCCTCCCAGCACGGCCACCTAGGTAA
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