mRNA_H-paniculata_contig41561.10676.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41561.10676.1
Unique NamemRNA_H-paniculata_contig41561.10676.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41561.10676.1 vs. uniprot
Match: A0A4S4L116_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L116_9AGAM)

HSP 1 Score: 147 bits (371), Expect = 1.310e-38
Identity = 89/247 (36.03%), Postives = 134/247 (54.25%), Query Frame = 1
Query:    1 ISQGSYIREVLKIYGFDERRGVPTPV---EGKVKTLAPESADKSGNSTEYRGMVGSLMYTSTGTRPDIAYMVHQAARRSYSTVPSVHASAFFVISVLCLTSALRSAVR-VMVTVWDLFVDGNWAEDVEDRKSTAGYVLKLNGCAISWCSRKQQLVTWSSTEAEYVVAEEAGKETEYISELLGSIGFGCREGTTLFKDNKSTINLSKGSGANCRTKHIGMCWREIREWIRGGVLALKYLQTGDQLADI 729
            +SQ  Y+ EVL  +G  +   + TP+   +  V+T  PE   ++     Y+ ++GS+M+   GTRPD+A+ +   ++ S +       +   ++  LC TS  R   R         FVD +WA +V DR+S +G+V K+   AISW S+KQ     SST+AEYV    A KE  ++  L   I   C+  TTLF DN+S + +++    + RTKHIG     +RE +  G L LKYL TGDQ+AD+
Sbjct:  144 LSQERYVEEVLSRFGQQDAHPMVTPMLANQRLVRTEKPEVDIRT-----YQRILGSVMWAMLGTRPDLAFTIGSLSQFSSAPTEEALHALMRMLRYLCRTSDTRLVYRGTQKEELTGFVDADWAGNVNDRRSISGFVFKVADGAISWSSKKQGSTALSSTKAEYVAGTHAAKELVWLWALFAEISLPCKGPTTLFMDNQSAMAIAENPVYHARTKHIGARHHFLRERVEDGELELKYLPTGDQMADV 385          
BLAST of mRNA_H-paniculata_contig41561.10676.1 vs. uniprot
Match: A0A8D8D293_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8D293_CULPI)

HSP 1 Score: 147 bits (371), Expect = 3.050e-38
Identity = 90/247 (36.44%), Postives = 133/247 (53.85%), Query Frame = 1
Query:    1 ISQGSYIREVLKIYGFDERRGVPTPVEGKVKTLAPESADKSGNSTEYRGMVGSLMYTSTGTRPDIAYMVHQAARRSYSTVPSVHASAFFVISVLCLTS----ALRSAVRVMVTVWDLFVDGNWAEDVEDRKSTAGYVLKLNGCAISWCSRKQQLVTWSSTEAEYVVAEEAGKETEYISELLGSIGFGCREGTTLFKDNKSTINLSKGSGANCRTKHIGMCWREIREWIRGGVLALKYLQTGDQLADI 729
            I+Q S+IR++ K YG DE +    P++      A E ++   N+TEY  +VGSL+Y ST TRPDIA  V   +R+  S   +       V+  L  T+     L ++    ++  + F D +WA D  DRKS +G+V +     ISW SRKQ  V+ S+ EAEYV   EA +E  ++  LL  +G   +  TT+F+DNKS ++       N R+KHI   +  I++    G + L+Y  T D LADI
Sbjct:  158 INQSSFIRKIAKQYGLDESKKSKIPMDTGYYKFA-EKSEVLPNNTEYHSLVGSLLYVSTNTRPDIAASVSILSRKIQSPSQADWTELKRVVRYLVGTADHRLQLGTSEADRMSALEGFCDADWASDTSDRKSNSGFVFRFGEATISWASRKQTCVSTSTMEAEYVALAEAVQEVVWLRRLLAELGEKQQTPTTIFEDNKSCLDFVALERQNRRSKHIDTKFHYIKDAATSGQIVLRYCTTTDMLADI 403          
BLAST of mRNA_H-paniculata_contig41561.10676.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI)

HSP 1 Score: 141 bits (355), Expect = 3.180e-37
Identity = 99/261 (37.93%), Postives = 138/261 (52.87%), Query Frame = 1
Query:    1 ISQGSYIREVLKIYGFDERRGVPTPVEG--KVKTLAPESADKSGNSTEYRGMVGSLMYTSTGTRPDIAYMVHQAARRSYSTVPSVHASAFF-VISVLCLTSALRSAV--------RVMVTVWDLFVDGNWAEDVEDRKSTAGYVLKLNGCAISWCSRKQQLVTWSSTEAEYVVAEEAGKETEYISELLGSIGFGCREGTT-------LFKDNKSTINLSKGSGANCRTKHIGMCWREIREWIRGGVLALKYLQTGDQLADI 729
            ISQ  Y+  +LK +G  + R V TP+E   K+  LA    D       Y+  +G+LMY   G+RPDIA+ V   ++ + ST  + H +A   V   L  TS LR              +TV   + D +WA D  DR+ST+ YV KL G AISWCSRKQQ +  SSTEAEYV    A KE  ++S LL  +        +       +  DN+S + L+K S  + RTKHI +    IR+ +  G L ++Y+ TGDQ+AD+
Sbjct:   10 ISQEQYVETILKRHGMSDCRPVSTPMEANFKLDKLAEAEIDPK----PYQSALGALMYAMLGSRPDIAFAVGTLSKHA-STPGTEHWNALMRVFRYLRGTSGLRLTYGKDLKPLCEHGLTVVG-YSDADWAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADV 264          
BLAST of mRNA_H-paniculata_contig41561.10676.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 143 bits (360), Expect = 4.490e-37
Identity = 95/260 (36.54%), Postives = 135/260 (51.92%), Query Frame = 1
Query:    1 ISQGSYIREVLKIYGFDERRGVPTPVEGKVKTLAPESADKSGNSTEYRGMVGSLMYTSTGTRPDIAYMVHQAARRSYSTVPSVHASAFFVISVLCLTSALRSAVRVMVTVWDL-----------------FVDGNWAEDVEDRKSTAGYVLKLNGCAISWCSRKQQLVTWSSTEAEYVVAEEAGKETEYISELLGSIGFGCREGTTLFKDNKSTINLSKGSGANCRTKHIGMCWREIREWIRGGVLALKYLQTGDQLADI 729
            I+Q  Y  E LK YG +    V  P+    K L+      + + T ++ +VGSL Y  T TRPD+ Y V+  +R  Y   P+                 L +A R++  V                    FVD ++A DV+DRKST+GYV  L G A+SW S+KQ +VT S+TEAE+V A     +  ++  +LG IG+   EGTTLF DN STI LSK    + R+KHI + +  +R+ +   V+ LK+  T DQL+DI
Sbjct:  111 INQQKYAEETLKKYGMEGCNAVKNPIVPGNK-LSRAGGGDAADPTMFKQLVGSLRYL-TATRPDLIYSVNLVSR--YMENPN--------------EQHLLAAKRILRYVQGTCGFGIRYKQGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDI 352          
BLAST of mRNA_H-paniculata_contig41561.10676.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF)

HSP 1 Score: 140 bits (353), Expect = 2.480e-36
Identity = 95/256 (37.11%), Postives = 132/256 (51.56%), Query Frame = 1
Query:    1 ISQGSYIREVLKIYGFDERRGVPTPVEGKVKTLAPESADKSGNSTEYRGMVGSLMYTSTGTRPDIAYMVHQAARRSYSTVPS-------------VHASAFFVISVLCLTSALRSAVRVMVTVWDLFVDGNWAEDVEDRKSTAGYVLKLNGCAISWCSRKQQLVTWSSTEAEYVVAEEAGKETEYISELLGSIGFGCREGTTLFKDNKSTINLSKGSGANCRTKHIGMCWREIREWIRGGVLALKYLQTGDQLADI 729
            ISQ  Y  E LK YG  +   V  P+    K L    A +  + T Y+ +VGSL Y  T TRPD+ Y V+  +R  Y   P              V  +A F I  LC           +V     +VD ++A D +DRKST+G+     G A+SW S+KQ +VT S+TEAEYV A     +  ++  +L  IGFG  +GT LF DN S I LSK    + R+KHI + +  +RE +  G+++ +Y  T +QLADI
Sbjct:   79 ISQRKYALETLKKYGMQDCNAVRNPMVPGNK-LTKRGAGEEVDPTAYKQLVGSLRYL-TATRPDLIYSVNVVSR--YMENPREEHMMAVKHIMRYVKGTAGFGIQYLC------GGEEKLVG----YVDSDYAGDEDDRKSTSGFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCSTHEQLADI 320          
BLAST of mRNA_H-paniculata_contig41561.10676.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 140 bits (352), Expect = 7.750e-36
Identity = 83/250 (33.20%), Postives = 133/250 (53.20%), Query Frame = 1
Query:    1 ISQGSYIREVLKIYGFDERRGVPTPVEGKVKTLAPESADKSGNSTEYRGMVGSLMYTSTGTRPDIAYMVHQAARRSYSTVPSVHASAFFVISVLCLTSALRSAVRVMVTVWDL-------FVDGNWAEDVEDRKSTAGYVLKLNGCAISWCSRKQQLVTWSSTEAEYVVAEEAGKETEYISELLGSIGFGCREGTTLFKDNKSTINLSKGSGANCRTKHIGMCWREIREWIRGGVLALKYLQTGDQLADI 729
            I Q +Y   ++K YG +  + V TPV+   K ++     +  N  EY+  VGSL+Y S+ TRPDI + V+  A+ S +   + H +A     V  +   L+  V   +   +        F D +WA D+ DRKST+GY  ++NG A+SW S+KQ  V  S+ EAEYV    A +E  ++ +LL  +     +  T+++DN+S I +SK    + R+KHI + +  +R+ +    L + Y  TG  LAD+
Sbjct:  117 IGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFS-ANFTNEHWTA-----VKRIFRYLKKTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADL 360          
BLAST of mRNA_H-paniculata_contig41561.10676.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 140 bits (354), Expect = 1.840e-34
Identity = 84/250 (33.60%), Postives = 133/250 (53.20%), Query Frame = 1
Query:    1 ISQGSYIREVLKIYGFDERRGVPTPVEGKVKTLAPESADKSGNSTEYRGMVGSLMYTSTGTRPDIAYMVHQAARRSYSTVPSVHASAFFVISVLCLTSALRSAVRVMVTVWDL-------FVDGNWAEDVEDRKSTAGYVLKLNGCAISWCSRKQQLVTWSSTEAEYVVAEEAGKETEYISELLGSIGFGCREGTTLFKDNKSTINLSKGSGANCRTKHIGMCWREIREWIRGGVLALKYLQTGDQLADI 729
            I Q +Y   ++K YG +  + V TPV+   K ++     +  N  EY+  VGSL+Y S+ TRPDI + V+  A+ S +   + H +A     V  +   L+  V   +   +        F D +WA D+ DRKST+GY  ++NG A+SW S+KQ  V  S+ EAEYV    A +E  ++ +LL  +     E  T+++DN+S I +SK    + R+KHI + +  +R+ +    L + Y  TG  LAD+
Sbjct: 1006 IGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPT-NEHWTA-----VKRIFRYLKGTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADL 1249          
BLAST of mRNA_H-paniculata_contig41561.10676.1 vs. uniprot
Match: A0A4Y9ZJA2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZJA2_9AGAM)

HSP 1 Score: 140 bits (354), Expect = 1.870e-34
Identity = 90/245 (36.73%), Postives = 129/245 (52.65%), Query Frame = 1
Query:    1 ISQGSYIREVLKIYGFDERRGVPTPVEGKVKTLAPESADKSGNSTEYRGMVGSLMYTSTGTRPDIAYMVHQAARRSYSTVPSVHASAFFVISVLCLTSALRSAVRVMVTVWDL--FVDGNWAEDVEDRKSTAGYVLKLNGCAISWCSRKQQLVTWSSTEAEYVVAEEAGKETEYISELLGSIGFGCREGTTLFKDNKSTINLSKGSGANCRTKHIGMCWREIREWIRGGVLALKYLQTGDQLADI 729
            +SQ  YI +VL+ +GF + R + TPV    K     +A+   ++ +Y+  VGSLMY   GTRPDIAY V   ++ S +        A      L  T+  +          +L  +VD +WA D  DR+S +GYV  L G AISW S+KQQ V  SSTEAEY+ A  A KE  ++  LL  +       T L  DN+  I L+K    +  TKHI +    +R+ +  G +A +Y+ T DQ+AD+
Sbjct: 1143 LSQKRYIADVLERHGFADARPISTPVSVNQKLEKLPAAEI--DARKYQSAVGSLMYAMLGTRPDIAYAVGLLSQHSSAPGAEHWNVAARTFKYLRRTADYQLVYNGKRKNDELTGYVDSDWANDPNDRRSISGYVFTLAGAAISWSSKKQQSVAQSSTEAEYMAAAHATKEAVWLRMLLSDLRQPIERPTPLLIDNQGAIALAKNPAYHACTKHIDVRHHFLRDKVEDGTIAAEYIPTADQVADV 1385          
BLAST of mRNA_H-paniculata_contig41561.10676.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 140 bits (353), Expect = 1.930e-34
Identity = 84/257 (32.68%), Postives = 134/257 (52.14%), Query Frame = 1
Query:    1 ISQGSYIREVLKIYGFDERRGVPTPVEGKVKTLAPESADKSGNSTEYRGMVGSLMYTSTGTRPDIAYMVHQAARRSYSTVPSVHASAFFVISVLCLTSALRSAVRVMVTVWDL--------------FVDGNWAEDVEDRKSTAGYVLKLNGCAISWCSRKQQLVTWSSTEAEYVVAEEAGKETEYISELLGSIGFGCREGTTLFKDNKSTINLSKGSGANCRTKHIGMCWREIREWIRGGVLALKYLQTGDQLADI 729
            + Q +Y   VLK +G +  + V TPV+   K +      +  +  +++  VGSL+Y ST TRPDIAY V+  AR  +   P+               +A++  +R +    +L              F D +WA D  DRKS +GY+ +++G A+SW S+KQ  V  S+ EAEY+    A +E  ++ +L+  +       T +F+DN+S I ++K S  + R KHI + +  IRE I GGV+ L+Y  T D +AD+
Sbjct:  484 MGQATYAENVLKKFGMENSKPVSTPVDINTKLVKHSDDSEVMDPKQFQSAVGSLLYLSTRTRPDIAYAVNNVAR--FCAKPTKQH-----------WTAVKRIMRYLKGTLNLGLLYNKDKPKECIGFSDADWAGDQNDRKSMSGYMFQISGAAVSWRSKKQTCVALSTAEAEYMALASAAQEAVWMRQLMTDLKVNQAGPTVMFEDNQSAICMAKNSQFHGRAKHIDIKYHFIREKIAGGVIDLQYCNTDDMVADM 727          
BLAST of mRNA_H-paniculata_contig41561.10676.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 134 bits (336), Expect = 3.610e-34
Identity = 82/246 (33.33%), Postives = 132/246 (53.66%), Query Frame = 1
Query:    1 ISQGSYIREVLKIYGFDERRGVPTPVE-GKVKTLAPESADKSGNSTEYRGMVGSLMYTSTGTRPDIAYMVHQAARRSYSTVPSVHASAFFVISVLCLTSALRSAVRVMVTVWDL--FVDGNWAEDVEDRKSTAGYVLKLNGCAISWCSRKQQLVTWSSTEAEYVVAEEAGKETEYISELLGSIGFGCREGTTLFKDNKSTINLSKGSGANCRTKHIGMCWREIREWIRGGVLALKYLQTGDQLADI 729
            ISQ +Y++ +LK +G ++ + V TP+E GK     P+  + + N+ EY+ ++G L Y +T TRPD+A  V   ++            A  V+  +  T           T   L  + D +WA D++ R+ST+GYV ++NG  +SWCS++Q  VT S+TEAEYV    A +E  ++  LL  IG    + + + +DN+  I LSK    + RTKHI + +  +RE +    + + Y  T   LAD+
Sbjct:   40 ISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDDENPT-NTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADV 284          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41561.10676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4S4L116_9AGAM1.310e-3836.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8D8D293_CULPI3.050e-3836.44Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]
A0A060SU91_PYCCI3.180e-3737.93Uncharacterized protein n=2 Tax=Pycnoporus cinnaba... [more]
A0A6D2JBX5_9BRAS4.490e-3736.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0006A737CF2.480e-3637.11uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A7D9M6E1_PARCT7.750e-3633.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT1.840e-3433.60Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A4Y9ZJA2_9AGAM1.870e-3436.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A498M2F0_LABRO1.930e-3432.68Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9D5L2_PARCT3.610e-3433.33Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41561contigH-paniculata_contig41561:634..1440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score135.6
Seed ortholog evalue3.2e-29
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size732
Cds size732
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930266.3352313-CDS-H-paniculata_contig41561:633..12461622930266.3352313-CDS-H-paniculata_contig41561:633..1246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41561 634..1246 -
1691481217.0598836-CDS-H-paniculata_contig41561:633..12461691481217.0598836-CDS-H-paniculata_contig41561:633..1246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41561 634..1246 -
1622930266.356713-CDS-H-paniculata_contig41561:1321..14401622930266.356713-CDS-H-paniculata_contig41561:1321..1440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41561 1322..1440 -
1691481217.0726054-CDS-H-paniculata_contig41561:1321..14401691481217.0726054-CDS-H-paniculata_contig41561:1321..1440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41561 1322..1440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41561.10676.1prot_H-paniculata_contig41561.10676.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41561 634..1440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41561.10676.1

>prot_H-paniculata_contig41561.10676.1 ID=prot_H-paniculata_contig41561.10676.1|Name=mRNA_H-paniculata_contig41561.10676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp
ISQGSYIREVLKIYGFDERRGVPTPVEGKVKTLAPESADKSGNSTEYRGM
VGSLMYTSTGTRPDIAYMVHQAARRSYSTVPSVHASAFFVISVLCLTSAL
RSAVRVMVTVWDLFVDGNWAEDVEDRKSTAGYVLKLNGCAISWCSRKQQL
VTWSSTEAEYVVAEEAGKETEYISELLGSIGFGCREGTTLFKDNKSTINL
SKGSGANCRTKHIGMCWREIREWIRGGVLALKYLQTGDQLADI*
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mRNA from alignment at H-paniculata_contig41561:634..1440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41561.10676.1 ID=mRNA_H-paniculata_contig41561.10676.1|Name=mRNA_H-paniculata_contig41561.10676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=807bp|location=Sequence derived from alignment at H-paniculata_contig41561:634..1440- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCGCAAGGTAGCTACATCCGCGAGGTACTAAAGATATACGGTTTTGA CGAGCGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAAGACTTTGG CACCCGAGTCGGCCGACAAGTTCTCCGAACCGAAATCACTTGGAGTTGTA CTGTCGGGCATAGGCGCAGGAGTACAAGAAAAAAGCAGAGGGAGAAGTGG CAATTCAACTGAATACAGAGGCATGGTAGGATCACTCATGTACACCTCGA CAGGAACTAGACCTGATATAGCATACATGGTACACCAAGCAGCACGTCGT TCCTACAGTACTGTGCCTTCAGTACATGCAAGCGCATTTTTCGTTATCTC AGTACTGTGCCTGACCTCCGCATTACGTTCGGCGGTAAGAGTAATGGTCA CGGTCTGGGATTTATTCGTTGATGGCAATTGGGCGGAAGATGTCGAGGAC CGAAAGTCCACAGCAGGATACGTACTCAAACTGAACGGTTGTGCGATAAG TTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGAGGCAG AGTACGTTGTTGCAGAAGAAGCGGGGAAGGAGACGGAATATATAAGTGAG TTACTAGGATCGATAGGTTTCGGATGCAGGGAGGGCACGACATTGTTTAA GGACAATAAATCAACTATCAATCTCAGTAAGGGATCTGGCGCCAACTGCA GGACAAAGCACATCGGAATGTGCTGGCGCGAAATTCGAGAGTGGATTCGG GGAGGAGTATTGGCGTTGAAATACCTGCAGACCGGCGACCAACTTGCTGA CATTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig41561:634..1440-

>mRNA_H-paniculata_contig41561.10676.1 ID=mRNA_H-paniculata_contig41561.10676.1|Name=mRNA_H-paniculata_contig41561.10676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1464bp|location=Sequence derived from alignment at H-paniculata_contig41561:634..1440- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCGCAAGGTAGCTACATCCGCGAGGTACTAAAGATATACGGTTTTGA
CGAGCGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAAGACTTTGG
CACCCGAGTCGGCCGACAAATCTCGCAAGGTAGCTACATCCGCGAGGTAC
TAAAGATATACGGTTTTGACGAGCGTCGAGGAGTACCCACCCCTGTAGAG
GGAAAAGTGAAGACTTTGGCACCCGAGTCGGCCGACAAAAGTGGCAATTC
AACTGAATACAGAGGCATGGTAGGATCACTCATGTACACCTCGACAGGAA
CTAGACCTGATATAGCATACATGGTACACCAAGCAGCACGTCGTTCCTAC
AGTACTGTGCCTTCAGTACATGCAAGCGCATTTTTCGTTATCTCAGTACT
GTGCCTGACCTCCGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCT
GGGATTTATTCGTTGATGGCAATTGGGCGGAAGATGTCGAGGACCGAAAG
TCCACAGCAGGATACGTACTCAAACTGAACGGTTGTGCGATAAGTTGGTG
CTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTACG
TTGTTGCAGAAGAAGCGGGGAAGGAGACGGAATATATAAGTGAGTTACTA
GGATCGATAGGTTTCGGATGCAGGGAGGGCACGACATTGTTTAAGGACAA
TAAATCAACTATCAATCTCAGTAAGGGATCTGGCGCCAACTGCAGGACAA
AGCACATCGGAATGTGCTGGCGCGAAATTCGAGAGTGGATTCGGGGAGGA
GTATTGGCGTTGAAATACCTGCAGACCGGCGACCAACTTGCTGACATTTG
AAAGTGGCAATTCAACTGAATACAGAGGCATGGTAGGATCACTCATGTAC
ACCTCGACAGGAACTAGACCTGATATAGCATACATGGTACACCAAGCAGC
ACGTCGTTCCTACAGTACTGTGCCTTCAGTACATGCAAGCGCATTTTTCG
TTATCTCAGTACTGTGCCTGACCTCCGCATTACGTTCGGCGGTAAGAGTA
ATGGTCACGGTCTGGGATTTATTCGTTGATGGCAATTGGGCGGAAGATGT
CGAGGACCGAAAGTCCACAGCAGGATACGTACTCAAACTGAACGGTTGTG
CGATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACA
GAGGCAGAGTACGTTGTTGCAGAAGAAGCGGGGAAGGAGACGGAATATAT
AAGTGAGTTACTAGGATCGATAGGTTTCGGATGCAGGGAGGGCACGACAT
TGTTTAAGGACAATAAATCAACTATCAATCTCAGTAAGGGATCTGGCGCC
AACTGCAGGACAAAGCACATCGGAATGTGCTGGCGCGAAATTCGAGAGTG
GATTCGGGGAGGAGTATTGGCGTTGAAATACCTGCAGACCGGCGACCAAC
TTGCTGACATTTGA
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