mRNA_H-paniculata_contig4152.10671.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4152.10671.1
Unique NamemRNA_H-paniculata_contig4152.10671.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4152.10671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4152contigH-paniculata_contig4152:6888..7343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4152.10671.1prot_H-paniculata_contig4152.10671.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4152 6926..7306 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930265.404347-UTR-H-paniculata_contig4152:6887..69251622930265.404347-UTR-H-paniculata_contig4152:6887..6925Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4152 6888..6925 +
1691481216.6822755-UTR-H-paniculata_contig4152:6887..69251691481216.6822755-UTR-H-paniculata_contig4152:6887..6925Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4152 6888..6925 +
1622930265.4395125-UTR-H-paniculata_contig4152:7306..73431622930265.4395125-UTR-H-paniculata_contig4152:7306..7343Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4152 7307..7343 +
1691481216.71625-UTR-H-paniculata_contig4152:7306..73431691481216.71625-UTR-H-paniculata_contig4152:7306..7343Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4152 7307..7343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930265.4206994-CDS-H-paniculata_contig4152:6925..73061622930265.4206994-CDS-H-paniculata_contig4152:6925..7306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4152 6926..7306 +
1691481216.697833-CDS-H-paniculata_contig4152:6925..73061691481216.697833-CDS-H-paniculata_contig4152:6925..7306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4152 6926..7306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4152.10671.1

>prot_H-paniculata_contig4152.10671.1 ID=prot_H-paniculata_contig4152.10671.1|Name=mRNA_H-paniculata_contig4152.10671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MMDLGRHSYTHNRNSAPPVRRGCVVNNLVFNRACISSVRVILTFRTNTHK
RRRRRRRHMIHLQQTFMRFIIRVTQKYFSIPFGDTIFKHSESEQFKFRPN
SIRSFSSFYKWSTYTTGKPEICCRRA*
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mRNA from alignment at H-paniculata_contig4152:6888..7343+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4152.10671.1 ID=mRNA_H-paniculata_contig4152.10671.1|Name=mRNA_H-paniculata_contig4152.10671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at H-paniculata_contig4152:6888..7343+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCAAAAGGTCGATAGGTATTTTCTCGAACATGCAATGATGGACCTT
GGACGCCACTCTTACACACACAACAGGAACAGCGCTCCTCCTGTACGTCG
AGGGTGCGTGGTGAATAATTTAGTCTTCAACAGAGCATGTATTTCCAGTG
TACGGGTAATTCTAACGTTTAGAACAAACACACACAAGAGACGACGACGA
CGACGACGACACATGATCCACTTGCAACAAACATTCATGAGATTTATAAT
CCGGGTTACACAAAAATATTTCAGTATTCCATTCGGAGATACAATATTCA
AACATTCAGAGTCGGAACAGTTCAAATTCCGTCCGAATTCTATACGTAGC
TTCTCTTCTTTTTACAAATGGTCTACATACACCACCGGCAAACCTGAAAT
CTGTTGCCGCCGAGCTTGATGCGCGTCACCGCCGCAAGCATGCGCGTATC
TTCAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4152:6888..7343+

>mRNA_H-paniculata_contig4152.10671.1 ID=mRNA_H-paniculata_contig4152.10671.1|Name=mRNA_H-paniculata_contig4152.10671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig4152:6888..7343+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGACCTTGGACGCCACTCTTACACACACAACAGGAACAGCGCTCC
TCCTGTACGTCGAGGGTGCGTGGTGAATAATTTAGTCTTCAACAGAGCAT
GTATTTCCAGTGTACGGGTAATTCTAACGTTTAGAACAAACACACACAAG
AGACGACGACGACGACGACGACACATGATCCACTTGCAACAAACATTCAT
GAGATTTATAATCCGGGTTACACAAAAATATTTCAGTATTCCATTCGGAG
ATACAATATTCAAACATTCAGAGTCGGAACAGTTCAAATTCCGTCCGAAT
TCTATACGTAGCTTCTCTTCTTTTTACAAATGGTCTACATACACCACCGG
CAAACCTGAAATCTGTTGCCGCCGAGCTTGAATGATGGACCTTGGACGCC
ACTCTTACACACACAACAGGAACAGCGCTCCTCCTGTACGTCGAGGGTGC
GTGGTGAATAATTTAGTCTTCAACAGAGCATGTATTTCCAGTGTACGGGT
AATTCTAACGTTTAGAACAAACACACACAAGAGACGACGACGACGACGAC
GACACATGATCCACTTGCAACAAACATTCATGAGATTTATAATCCGGGTT
ACACAAAAATATTTCAGTATTCCATTCGGAGATACAATATTCAAACATTC
AGAGTCGGAACAGTTCAAATTCCGTCCGAATTCTATACGTAGCTTCTCTT
CTTTTTACAAATGGTCTACATACACCACCGGCAAACCTGAAATCTGTTGC
CGCCGAGCTTGA
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