mRNA_H-paniculata_contig41517.10669.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41517.10669.1
Unique NamemRNA_H-paniculata_contig41517.10669.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41517.10669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41517contigH-paniculata_contig41517:239..1407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size272
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41517.10669.1prot_H-paniculata_contig41517.10669.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41517 267..1346 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930265.308146-UTR-H-paniculata_contig41517:238..2661622930265.308146-UTR-H-paniculata_contig41517:238..266Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41517 239..266 +
1691481216.636618-UTR-H-paniculata_contig41517:238..2661691481216.636618-UTR-H-paniculata_contig41517:238..266Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41517 239..266 +
1622930265.3616881-UTR-H-paniculata_contig41517:1346..14071622930265.3616881-UTR-H-paniculata_contig41517:1346..1407Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41517 1347..1407 +
1691481216.6723948-UTR-H-paniculata_contig41517:1346..14071691481216.6723948-UTR-H-paniculata_contig41517:1346..1407Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41517 1347..1407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930265.3288178-CDS-H-paniculata_contig41517:266..2871622930265.3288178-CDS-H-paniculata_contig41517:266..287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41517 267..287 +
1691481216.6456246-CDS-H-paniculata_contig41517:266..2871691481216.6456246-CDS-H-paniculata_contig41517:266..287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41517 267..287 +
1622930265.3466039-CDS-H-paniculata_contig41517:1184..13461622930265.3466039-CDS-H-paniculata_contig41517:1184..1346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41517 1185..1346 +
1691481216.657258-CDS-H-paniculata_contig41517:1184..13461691481216.657258-CDS-H-paniculata_contig41517:1184..1346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41517 1185..1346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41517.10669.1

>prot_H-paniculata_contig41517.10669.1 ID=prot_H-paniculata_contig41517.10669.1|Name=mRNA_H-paniculata_contig41517.10669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MVPVELKVILSESDNGIMRTGHTPRKKMPKCHLRWILFRRGVLGPLQQCH
LALLRAIDIR*
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mRNA from alignment at H-paniculata_contig41517:239..1407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41517.10669.1 ID=mRNA_H-paniculata_contig41517.10669.1|Name=mRNA_H-paniculata_contig41517.10669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1169bp|location=Sequence derived from alignment at H-paniculata_contig41517:239..1407+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCACGTAGATGTCGCCGGTCGCCGAATGGTTCCTGTAGAGCTGAAGG
TATGCAGCACGACAACAGGCGATGTCGCAACCAGCTTTTCACGCTTGTTG
TCCTTAATCATGCGCCTGACTAGGTCATGCTTTGTGTTGTACATGGCAGC
CAATTTCCCTCACCTTGCTGTTGTATTGATATGCTGTCTTACTCTTGGTG
TCTTTCACCATACAGTGCTGCCTCAGTTGTGCTTGACTGTACAGACGGTA
AGATCTGTGTCTGTCACTGTGCATGGCAGAAGTCGTCCTCTTCTTCACAG
TCCAGTAGAACTGTGATGATGCGAAGCTAACTTATAATGTATATTACTGT
AGTGTCTGGCCTTATTCTTGTGCAGTACAAACCGTACTGTCCTCGAACAT
ACCGTGGCACAGGAAGTATGGCCCTTCTAAGCTGTGACACATTGAATAAT
ATGGCGGTGCTGAGTAATAAAAATAATGGTGTTTGCAACGAGAATTTTCT
CATCCAAGGCTGCCGAATCAGCCAGGGTGCGGGGGATACAAATTGACGCA
TTTCACCGTCTCGACAACATGCCGTTGGAAATTCCAAACTGGGCTACATT
CAGTTATGGGACAAGTTAAAGGTTACCCGTTAAAAAAATGTGGTATTTGT
TAGTGCCTATCGTAAATACTCTATTGTCCCTTCTTTCCTGTCGGCAAGGA
GTGCTGCGCACATCTCAGGAGAATCGTTTTTTCGTCATTAGTTTTGCTGG
GCAAAGAATATCCAGACCACCCAACGGACGCCGTGAGCTTGTACCTTAAG
CATGACGCGTGATGCAATACAGGATTTCCCTAAGCGTTTGTATTCGATTT
CGCTATAGGTGCGTTTGATAGTTTTGTTTTGTTTATTGGTAAGTTCGATC
GGTTACCCTGTTCAATTACCCTGTTGTTGTCGTCCTTCTCTTACAGGTTA
TATTATCAGAGAGTGACAATGGAATTATGCGCACTGGTCACACACCGCGA
AAGAAAATGCCAAAATGCCACCTGCGGTGGATTCTCTTCCGTAGGGGTGT
CTTAGGCCCATTGCAACAGTGCCACCTTGCGTTGCTGAGGGCGATTGATA
TTCGATAAGCCGAGGTGCGTCATTGCAAGTATTTTATTTCAGCGAGGCCG
TCGCACTGGGAACACGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig41517:239..1407+

>mRNA_H-paniculata_contig41517.10669.1 ID=mRNA_H-paniculata_contig41517.10669.1|Name=mRNA_H-paniculata_contig41517.10669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig41517:239..1407+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCCTGTAGAGCTGAAGATGGTTCCTGTAGAGCTGAAGGTTATATT
ATCAGAGAGTGACAATGGAATTATGCGCACTGGTCACACACCGCGAAAGA
AAATGCCAAAATGCCACCTGCGGTGGATTCTCTTCCGTAGGGGTGTCTTA
GGCCCATTGCAACAGTGCCACCTTGCGTTGCTGAGGGCGATTGATATTCG
ATAAGTTATATTATCAGAGAGTGACAATGGAATTATGCGCACTGGTCACA
CACCGCGAAAGAAAATGCCAAAATGCCACCTGCGGTGGATTCTCTTCCGT
AGGGGTGTCTTAGGCCCATTGCAACAGTGCCACCTTGCGTTGCTGAGGGC
GATTGATATTCGATAA
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