mRNA_H-paniculata_contig4151.10668.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4151.10668.1
Unique NamemRNA_H-paniculata_contig4151.10668.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4151.10668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4151contigH-paniculata_contig4151:6958..7935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size978
Cds size960
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930265.229568-CDS-H-paniculata_contig4151:6957..79171622930265.229568-CDS-H-paniculata_contig4151:6957..7917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4151 6958..7917 -
1691481216.6193728-CDS-H-paniculata_contig4151:6957..79171691481216.6193728-CDS-H-paniculata_contig4151:6957..7917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4151 6958..7917 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930265.2471435-UTR-H-paniculata_contig4151:7917..79351622930265.2471435-UTR-H-paniculata_contig4151:7917..7935Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4151 7918..7935 -
1691481216.627947-UTR-H-paniculata_contig4151:7917..79351691481216.627947-UTR-H-paniculata_contig4151:7917..7935Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4151 7918..7935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4151.10668.1prot_H-paniculata_contig4151.10668.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4151 6958..7917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4151.10668.1

>prot_H-paniculata_contig4151.10668.1 ID=prot_H-paniculata_contig4151.10668.1|Name=mRNA_H-paniculata_contig4151.10668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=320bp
MEILEWLHINECPWDNGTCAAAARVGRRDILSWLRKRGCPWDETTCAAAA
LGGHLEVLKWAWAEGCEWDDKSICACAAENGHTDVLRWARSMGFPWDPNT
CRLAALGGHLETLRFARKWRCPCSEHNCMMAGAESGHLEVMEEFDEAVTR
STEFCRSAALGGHVVALKWLREQAPNGQHPWNNETPANAATHGRLALLKW
ARANGCGWNAATCCANAAKNGHLDVLMWIRSQASGHWKEGDMCYYAAVGG
SVRVMMYVRSQGCPWDSKLRTCEVAAKNGHLELLQWCRANGCPWRADKMC
KYAANQYEVLRWVKVQGCT*
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mRNA from alignment at H-paniculata_contig4151:6958..7935-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4151.10668.1 ID=mRNA_H-paniculata_contig4151.10668.1|Name=mRNA_H-paniculata_contig4151.10668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=978bp|location=Sequence derived from alignment at H-paniculata_contig4151:6958..7935- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCGGCAAACGGCAACATGGAGATCCTCGAGTGGCTGCACATCAACGA
GTGTCCCTGGGATAACGGTACGTGTGCCGCAGCAGCGCGCGTGGGACGCC
GGGATATCCTGAGCTGGTTGCGGAAACGGGGTTGCCCGTGGGATGAGACC
ACTTGCGCCGCCGCTGCTTTAGGGGGGCACTTGGAGGTGTTGAAATGGGC
GTGGGCGGAAGGGTGCGAATGGGATGATAAAAGCATCTGCGCCTGTGCTG
CTGAGAACGGACACACGGATGTTCTGAGGTGGGCAAGAAGTATGGGATTC
CCGTGGGACCCCAATACTTGCAGACTAGCAGCCCTTGGAGGGCACTTGGA
GACCCTCCGCTTCGCTCGCAAATGGAGGTGCCCTTGCAGCGAACACAACT
GCATGATGGCGGGTGCTGAGAGCGGACACCTGGAGGTAATGGAAGAATTC
GATGAGGCCGTCACCAGGAGCACTGAGTTCTGCAGGAGTGCTGCCCTTGG
GGGACACGTGGTGGCCCTCAAGTGGTTGCGGGAACAAGCCCCGAACGGAC
AACACCCTTGGAACAACGAGACACCTGCTAATGCAGCCACTCACGGCCGA
TTGGCACTTTTGAAGTGGGCCCGGGCAAATGGCTGCGGGTGGAATGCCGC
CACTTGCTGCGCTAACGCAGCCAAAAACGGACATCTAGATGTTCTGATGT
GGATTAGGAGTCAGGCGAGCGGTCACTGGAAGGAAGGGGATATGTGTTAC
TACGCGGCCGTGGGTGGCAGCGTCAGGGTTATGATGTATGTCAGGAGTCA
GGGTTGTCCCTGGGACTCGAAACTGCGTACGTGTGAGGTTGCAGCCAAGA
ACGGGCACCTGGAGCTCCTGCAGTGGTGTAGGGCAAATGGTTGCCCTTGG
CGGGCGGACAAGATGTGCAAGTACGCCGCCAACCAATATGAGGTGCTTCG
CTGGGTCAAGGTTCAGGGTTGCACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4151:6958..7935-

>mRNA_H-paniculata_contig4151.10668.1 ID=mRNA_H-paniculata_contig4151.10668.1|Name=mRNA_H-paniculata_contig4151.10668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1920bp|location=Sequence derived from alignment at H-paniculata_contig4151:6958..7935- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCCTCGAGTGGCTGCACATCAACGAGTGTCCCTGGGATAACGG
TACGTGTGCCGCAGCAGCGCGCGTGGGACGCCGGGATATCCTGAGCTGGT
TGCGGAAACGGGGTTGCCCGTGGGATGAGACCACTTGCGCCGCCGCTGCT
TTAGGGGGGCACTTGGAGGTGTTGAAATGGGCGTGGGCGGAAGGGTGCGA
ATGGGATGATAAAAGCATCTGCGCCTGTGCTGCTGAGAACGGACACACGG
ATGTTCTGAGGTGGGCAAGAAGTATGGGATTCCCGTGGGACCCCAATACT
TGCAGACTAGCAGCCCTTGGAGGGCACTTGGAGACCCTCCGCTTCGCTCG
CAAATGGAGGTGCCCTTGCAGCGAACACAACTGCATGATGGCGGGTGCTG
AGAGCGGACACCTGGAGGTAATGGAAGAATTCGATGAGGCCGTCACCAGG
AGCACTGAGTTCTGCAGGAGTGCTGCCCTTGGGGGACACGTGGTGGCCCT
CAAGTGGTTGCGGGAACAAGCCCCGAACGGACAACACCCTTGGAACAACG
AGACACCTGCTAATGCAGCCACTCACGGCCGATTGGCACTTTTGAAGTGG
GCCCGGGCAAATGGCTGCGGGTGGAATGCCGCCACTTGCTGCGCTAACGC
AGCCAAAAACGGACATCTAGATGTTCTGATGTGGATTAGGAGTCAGGCGA
GCGGTCACTGGAAGGAAGGGGATATGTGTTACTACGCGGCCGTGGGTGGC
AGCGTCAGGGTTATGATGTATGTCAGGAGTCAGGGTTGTCCCTGGGACTC
GAAACTGCGTACGTGTGAGGTTGCAGCCAAGAACGGGCACCTGGAGCTCC
TGCAGTGGTGTAGGGCAAATGGTTGCCCTTGGCGGGCGGACAAGATGTGC
AAGTACGCCGCCAACCAATATGAGGTGCTTCGCTGGGTCAAGGTTCAGGG
TTGCACGTGAATGGAGATCCTCGAGTGGCTGCACATCAACGAGTGTCCCT
GGGATAACGGTACGTGTGCCGCAGCAGCGCGCGTGGGACGCCGGGATATC
CTGAGCTGGTTGCGGAAACGGGGTTGCCCGTGGGATGAGACCACTTGCGC
CGCCGCTGCTTTAGGGGGGCACTTGGAGGTGTTGAAATGGGCGTGGGCGG
AAGGGTGCGAATGGGATGATAAAAGCATCTGCGCCTGTGCTGCTGAGAAC
GGACACACGGATGTTCTGAGGTGGGCAAGAAGTATGGGATTCCCGTGGGA
CCCCAATACTTGCAGACTAGCAGCCCTTGGAGGGCACTTGGAGACCCTCC
GCTTCGCTCGCAAATGGAGGTGCCCTTGCAGCGAACACAACTGCATGATG
GCGGGTGCTGAGAGCGGACACCTGGAGGTAATGGAAGAATTCGATGAGGC
CGTCACCAGGAGCACTGAGTTCTGCAGGAGTGCTGCCCTTGGGGGACACG
TGGTGGCCCTCAAGTGGTTGCGGGAACAAGCCCCGAACGGACAACACCCT
TGGAACAACGAGACACCTGCTAATGCAGCCACTCACGGCCGATTGGCACT
TTTGAAGTGGGCCCGGGCAAATGGCTGCGGGTGGAATGCCGCCACTTGCT
GCGCTAACGCAGCCAAAAACGGACATCTAGATGTTCTGATGTGGATTAGG
AGTCAGGCGAGCGGTCACTGGAAGGAAGGGGATATGTGTTACTACGCGGC
CGTGGGTGGCAGCGTCAGGGTTATGATGTATGTCAGGAGTCAGGGTTGTC
CCTGGGACTCGAAACTGCGTACGTGTGAGGTTGCAGCCAAGAACGGGCAC
CTGGAGCTCCTGCAGTGGTGTAGGGCAAATGGTTGCCCTTGGCGGGCGGA
CAAGATGTGCAAGTACGCCGCCAACCAATATGAGGTGCTTCGCTGGGTCA
AGGTTCAGGGTTGCACGTGA
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