mRNA_H-paniculata_contig4150.10666.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4150.10666.1
Unique NamemRNA_H-paniculata_contig4150.10666.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: D7FJJ9_ECTSI (Ribosomal RNA-processing protein 43 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ9_ECTSI)

HSP 1 Score: 429 bits (1104), Expect = 3.710e-147
Identity = 206/272 (75.74%), Postives = 241/272 (88.60%), Query Frame = 1
Query:   34 MEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATRQIGDELFITKDAPTPLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAAAEV 849
            MEVEAFQRLDPENFYRRF+KNGVRPDGRELRAVRPISVDV VLS E VQASALVGLGSTKVLAGI+L++G P+E+TP+ GMLDVE+KLTPLSS+KF++GRPSEQAH +  F+K SIVESGAL+L DL+++ G  AWKLC+DIVCLSFDGN+ADA L+AAM ALMRL+LP TR+I DE+F+T+D PT L +  VPVPLTCGVFDGII+ DPSLLEE+L+TTHVTVVST+ G+VCGVHKPGGSC SG+QLN CLQLCQQHA+ L +TL AA  +
Sbjct:    1 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAHVLSTFVKNSIVESGALVLTDLAIDDGAFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPTQLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTVVSTSEGKVCGVHKPGGSCASGKQLNECLQLCQQHAKQLTQTLAAAVRI 272          
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A836C8N5_9STRA (Ribosomal RNA-processing protein 43 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N5_9STRA)

HSP 1 Score: 258 bits (659), Expect = 1.250e-79
Identity = 135/282 (47.87%), Postives = 183/282 (64.89%), Query Frame = 1
Query:   34 MEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATRQIGD-ELFITKDAPTPLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVST-----------ATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAAA 843
            MEVEAFQ+LDP+ FYR+F+  GVRPDGR L+ VR ++V   VL+  HV ASALV LG TKV+ GITL++GQP+++ P  G ++V + LTPL S+ F+ GRPSEQA A+   I+  +  S     EDL +E    AW+LCID+ CLS++GN ADA L++  A L+RL+LP T    D E+ + +   TPL + HVP+PLT GVF+G +V DPSLLEEDL+   +TVV +              +VC VHK GG+C +   L   L L + HA+ ++  L  AA
Sbjct:    1 MEVEAFQKLDPQTFYRKFLSEGVRPDGRGLQEVRDVAVSCGVLTAPHVAASALVTLGDTKVVTGITLQVGQPSQAEPGCGDVEVSVHLTPLCSSMFSVGRPSEQAQALEALIRDVLTASRPFRREDLLIEARRFAWRLCIDMYCLSYEGNAADAALLSVAACLLRLRLPPTVITPDGEVLVAEGEGTPLPVSHVPLPLTFGVFEGALVADPSLLEEDLVAAALTVVQSLDEGKGGSGGGGAARVCAVHKAGGACVAPALLARALALGRSHAQRVLPVLRGAA 282          
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: M4BB92_HYAAE (Ribosomal RNA-processing protein 43 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BB92_HYAAE)

HSP 1 Score: 190 bits (482), Expect = 1.710e-53
Identity = 102/274 (37.23%), Postives = 160/274 (58.39%), Query Frame = 1
Query:   31 TMEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASA-LVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPAT--RQIGDELFITKDAPT-PLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAA 840
            +   + F+RL P  + R+ +++ VR DGR + A R   +   V+   H  AS+ LV LG T VL  I L +G PA +TP  G + +++ LTPL S +F+ GRPSE+A ++G+ +   ++ S  + +EDLS+  G   WKL +D+ C++ DGNV DA L + MAAL  LKLPAT   +  + + I  D  T PL +       +  V D  ++ DP+  EEDL +  +++  T  GQ+CGVHK GG+  +   +  C+Q+ +Q+A +L K + A+
Sbjct:   10 SFSAQTFKRLFPAEYARKCLQSNVRVDGRSIEATRTAQLQTNVV---HTAASSSLVKLGKTSVLTAIKLAVGTPAVATPDQGEIAIQVHLTPLCSNRFSVGRPSEEAQSIGSQLTRIVLGSRVVEMEDLSIAKGQSTWKLMVDVFCVNHDGNVLDAALASVMAALQTLKLPATSINEADNVVSIVPDGDTMPLCVRFGAYATSFAVVDSTVLIDPTSEEEDLASAVLSIAFTTEGQICGVHKAGGTIVAPDVMQHCMQIAKQNATVLAKLVDAS 280          
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A2D4CFL6_PYTIN (Ribosomal RNA-processing protein 43 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFL6_PYTIN)

HSP 1 Score: 189 bits (480), Expect = 3.890e-53
Identity = 103/274 (37.59%), Postives = 158/274 (57.66%), Query Frame = 1
Query:   31 TMEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATRQIGDELFITKDAP----TPLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAA 840
            + +   +++L P  F R+ I+N VRPDGR L+A R + +    +  E   +S+LV +G+T V+  I L +G PA +TP  G + ++  LTPL ST+F+ GRPSE+A ++G+ +   +  S  + +  LS+E G  AWKL +D+ C+  DGNV DA L++ MAAL  L+LPA   I +   +    P    TPLK+ H     T    +G IV DP+  EE L ++  ++      Q+ GVHKPGG+  + Q L++C+Q  +  A LL  T+  A
Sbjct:    7 SFDAAMYRKLFPREFVRKCIENDVRPDGRRLQAARAVHIQTGAI--ETAASSSLVKIGNTTVMTAIKLAVGTPAVATPDQGEIAIQAHLTPLCSTRFSLGRPSEEAQSIGSQLMRIVTGSRVVEMSTLSIERGKSAWKLIVDVYCIDHDGNVHDAALMSVMAALKTLRLPAV-VISESDHVVSLQPDGESTPLKVQHSVYSTTFADLEGRIVVDPTSEEESLASSVFSITYNTQEQLAGVHKPGGALLAPQTLHSCMQAAKTRASLLHSTVERA 277          
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A6U1QCI5_9STRA (Ribosomal RNA-processing protein 43 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QCI5_9STRA)

HSP 1 Score: 187 bits (476), Expect = 2.810e-52
Identity = 113/305 (37.05%), Postives = 157/305 (51.48%), Query Frame = 1
Query:   34 MEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATRQIGDELFITKDAPT------PLKIHHVPVPLTCGVFDG---------------------------IIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAAAEV 849
            MEVEAFQRL PE FY+RF+  G+RPDGR+   +R +++D+ VL   H   SA+V LG+TK +A ++L+IGQPA  TP  G + V + L PL    F A +    A  + +F+   +   G +  E L + PG  AW++CIDI+CL+  GN+ D  L AA++AL   +LP            +  P        L++ H+PV LT GVF                             ++V DPSLLEE L+ + VTVV    GQ+  V KPGG    G  LN CL LC    ++    L  A  +
Sbjct:    1 MEVEAFQRLAPEGFYKRFVSKGIRPDGRKFHEIRKMNIDLGVLPLTH--GSAMVRLGATKAVAAVSLQIGQPATLTPNCGEISVGVALRPLCHPNFPASQHCRTAQQMESFLTRLLNTCGIVSPESLCITPGAAAWRVCIDILCLNHQGNLIDVCLAAAVSALRCTRLPQLEAPDHPGGAYQIHPVGAGESRALELVHIPVALTLGVFPALSHHSGTTEHGTGDRDTPPGGGGGKMPVLVADPSLLEEGLMESVVTVVRNERGQINAVFKPGGCKLPGDCLNVCLALCTSQHKIFSSLLAEATAM 303          
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A2P4XYR1_9STRA (Ribosomal RNA-processing protein 43 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XYR1_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.040e-50
Identity = 96/269 (35.69%), Postives = 153/269 (56.88%), Query Frame = 1
Query:   31 TMEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATRQIGDELFITKDAP----TPLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVK 825
            +   E ++++ P  + R+ + N VRPD R + A R + +   V+  +   +S+LV LG T VL  I L +G PA +TP  G + +++ L+PL S +F  GRPSE+A ++G+ +   IV S  + +E LS+  G  AWKL +D+ C+  DGNV DA L + MAAL  LKLPAT  + +   +    P    TPL++ H     +  + D +++ DP+  EED  T   ++  +  GQ+CGVHK GGS  +   +  C+ + ++ AE L +
Sbjct:    9 SFSAEMYRKVFPAEYMRKCLANKVRPDSRTIEASRAVQLQTNVV--QTAASSSLVKLGKTSVLTAIKLAVGTPAVATPDQGEIAIQVHLSPLCSNRFTVGRPSEEAQSIGSQLTRIIVGSRVVEMESLSIVKGQSAWKLMVDVYCVDHDGNVLDAALTSIMAALRTLKLPAT-SVNEADNVVSIVPGGDATPLRVEHGAYATSFAIVDDVVLIDPTSDEEDQATAVFSLSYSTNGQLCGVHKAGGSIVAPSVMQQCMHIAKRKAETLAE 274          
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: G5AAV8_PHYSP (Ribosomal RNA-processing protein 43 n=3 Tax=Phytophthora TaxID=4783 RepID=G5AAV8_PHYSP)

HSP 1 Score: 181 bits (459), Expect = 4.380e-50
Identity = 96/270 (35.56%), Postives = 158/270 (58.52%), Query Frame = 1
Query:   40 VEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPAT--RQIGDELFITKDAP-TPLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAA 840
             + +++L P  + R+ + + VRPD R + A R + +  +V+  +   +S+LV LG T VL  I L +G PA +TP  G + V++ L+PL S +F+ GRPSE++ ++ + +   IV S  + +E LS+  G  AWKL +D+ C+  DGNV DA L + MAAL  LKLPAT   +  + + I  D   TPL++ H     +  V +  ++ DP+  EEDL +   ++  +  GQ+CGVHK GG+  +   +  C+Q+ +++ E L K + A+
Sbjct:   15 ADMYKKLFPAEYVRKCLASKVRPDSRTIEAARAVQLQTDVV--QTAASSSLVKLGKTSVLTAIKLAVGTPAVATPDQGEIAVQVHLSPLCSNRFSVGRPSEESQSISSQLTRIIVGSRVVEMESLSIVKGQSAWKLMVDVYCVDHDGNVLDAALTSIMAALKTLKLPATSVNEADNVVSIVPDEDATPLRVEHCAYATSFAVVEDSVLIDPTSDEEDLASAVFSLSYSTNGQLCGVHKAGGTIVAPHVMQQCMQVAKRNTEALAKLVDAS 282          
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A8K1CFV5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFV5_PYTOL)

HSP 1 Score: 181 bits (458), Expect = 7.070e-50
Identity = 96/274 (35.04%), Postives = 155/274 (56.57%), Query Frame = 1
Query:   31 TMEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATRQIGDELFITKDAPT----PLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAA 840
            + + + +++L P  +  + I+N VRPD R L A RP+ +   V+  +   +S+LV +G+T V+  + L +G PA +TP  G + +++ LTPL ST+F  GRPSE+  ++G+ +   I  S  + + DLS+E G  AWKL +D+  +  DGN+ DA L++ +AAL  L+LPA   I +   +    P     PLKI H     T G+ +  ++ DP+  EE L +   T+   +  Q+ GVHKPGGS    Q L+ C+ + ++ A LL   +  A
Sbjct:   13 SFDSDVYRKLFPREYVNKCIENNVRPDSRLLEATRPVHIQTNVV--KTAASSSLVKIGNTSVMTAVKLTVGTPAVATPDQGEIAIQVHLTPLCSTRFNLGRPSEETQSIGSQLTRIITGSRVVEMSDLSIERGKSAWKLMVDVYGVDHDGNIHDAALLSVIAALKTLQLPAVT-INESDHVVSIQPDGELMPLKIQHTVYSTTFGILNNRVIVDPTNEEELLASALFTITYNSNAQLAGVHKPGGSILEPQTLHHCMSIAKKRAVLLAAAIDKA 283          
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A0L0HN85_SPIPD (Ribosomal RNA-processing protein 43 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HN85_SPIPD)

HSP 1 Score: 179 bits (455), Expect = 2.950e-49
Identity = 101/275 (36.73%), Postives = 151/275 (54.91%), Query Frame = 1
Query:   25 V*TMEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLP-ATRQIGDELFITKDAPT-PLKIHHVPVPLTCGVFDG-IIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAA 840
            V +++ E F+++ P  ++RRF+  GVRPDGR L   R   + V  ++  H   SA+  LG T V+ GI  EI +P    P  G +     L PL S +F  G PSE + ++  +I   +  S  L L DL +E G   W L  DIVCL+++GN  DA ++A +AAL  ++LP AT    D     K+  T PLK+   P+ +T GVFDG  I+ DP + EE  +++ +TV+    G +CG+ KPGGS    + L +CL+  +  A  ++  L  A
Sbjct:   27 VFSLDSETFKKIHPTEYHRRFLSQGVRPDGRTLSRFRKAKITVGAITTAH--GSAMARLGETTVVCGIKAEITEPKTGAPRDGFIVPNFDLPPLCSPQFKPGPPSELSQSISEYINRVLESSKLLNLSDLCIEEGRAVWVLYADIVCLNYEGNAMDAAMLALVAALKHVRLPTATFYEADNAVRVKEQRTIPLKLSRTPISVTFGVFDGQFILADPDIEEEPHLSSQLTVIIEQNGGLCGMLKPGGSALGQETLTSCLEAARTRATHILGILEGA 299          
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A3M6VDK4_9STRA (Ribosomal RNA-processing protein 43 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VDK4_9STRA)

HSP 1 Score: 178 bits (452), Expect = 3.720e-49
Identity = 97/273 (35.53%), Postives = 154/273 (56.41%), Query Frame = 1
Query:   31 TMEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATR-QIGDEL--FITKDAPTPLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAA 840
            +   + FQ+L P  +  + + N VR D R + A+R + +   V+  E   +S+LV LG T VL  I L +G PA +TP  G + +++ L+PL S +F  GRPSE+A +V + +    + S  + +E+LS+  G  AWKL +D+ C+  DGNV DA L + MAAL  LKLP T     D +   +  +  TPL++ H     +  V D  ++ DP+  EEDL +   +   +  GQ+CGVHK GGS  +   ++ C+Q  +++ ELL K + ++
Sbjct:    4 SFSPDVFQKLFPVEYTHKCLMNKVRTDARTMDALRAVQLQTNVV--ETAASSSLVKLGKTSVLTAIKLAVGTPAVTTPDQGEIAIQVHLSPLCSNRFTVGRPSEEAQSVSSQLTRIFMGSRVVEMENLSIVNGQSAWKLMVDVYCVDHDGNVLDAALTSIMAALKTLKLPVTSVNEADNVVSIVPNEDATPLRVEHCAYATSFAVVDDTVLIDPTSDEEDLASAVFSFSYSTNGQLCGVHKAGGSIVAPNVMHQCMQKAKRNMELLAKLVDSS 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJJ9_ECTSI3.710e-14775.74Ribosomal RNA-processing protein 43 n=2 Tax=Ectoca... [more]
A0A836C8N5_9STRA1.250e-7947.87Ribosomal RNA-processing protein 43 n=1 Tax=Tribon... [more]
M4BB92_HYAAE1.710e-5337.23Ribosomal RNA-processing protein 43 n=1 Tax=Hyalop... [more]
A0A2D4CFL6_PYTIN3.890e-5337.59Ribosomal RNA-processing protein 43 n=2 Tax=Pythiu... [more]
A0A6U1QCI5_9STRA2.810e-5237.05Ribosomal RNA-processing protein 43 n=1 Tax=Fibroc... [more]
A0A2P4XYR1_9STRA1.040e-5035.69Ribosomal RNA-processing protein 43 n=1 Tax=Phytop... [more]
G5AAV8_PHYSP4.380e-5035.56Ribosomal RNA-processing protein 43 n=3 Tax=Phytop... [more]
A0A8K1CFV5_PYTOL7.070e-5035.04Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0L0HN85_SPIPD2.950e-4936.73Ribosomal RNA-processing protein 43 n=2 Tax=Spizel... [more]
A0A3M6VDK4_9STRA3.720e-4935.53Ribosomal RNA-processing protein 43 n=2 Tax=Perono... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4150contigH-paniculata_contig4150:7651..12353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score432.2
Seed ortholog evalue1.9e-118
Seed eggNOG ortholog2880.D7FJJ9
KEGG koko:K12586
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
EggNOG free text desc.U1 snRNA 3'-end processing
EggNOG OGsCOG2123@1,KOG1613@2759
Ec32 ortholog descriptionRrp43 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-04_006390.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons5
Model size1390
Cds size846
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930264.9780324-UTR-H-paniculata_contig4150:7650..81611622930264.9780324-UTR-H-paniculata_contig4150:7650..8161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4150 7651..8161 -
1691481216.5417988-UTR-H-paniculata_contig4150:7650..81611691481216.5417988-UTR-H-paniculata_contig4150:7650..8161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4150 7651..8161 -
1622930265.1297743-UTR-H-paniculata_contig4150:12320..123531622930265.1297743-UTR-H-paniculata_contig4150:12320..12353Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4150 12321..12353 -
1691481216.6012127-UTR-H-paniculata_contig4150:12320..123531691481216.6012127-UTR-H-paniculata_contig4150:12320..12353Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4150 12321..12353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930265.0284524-CDS-H-paniculata_contig4150:8161..83141622930265.0284524-CDS-H-paniculata_contig4150:8161..8314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4150 8162..8314 -
1691481216.5520065-CDS-H-paniculata_contig4150:8161..83141691481216.5520065-CDS-H-paniculata_contig4150:8161..8314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4150 8162..8314 -
1622930265.0510783-CDS-H-paniculata_contig4150:8560..87061622930265.0510783-CDS-H-paniculata_contig4150:8560..8706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4150 8561..8706 -
1691481216.5610533-CDS-H-paniculata_contig4150:8560..87061691481216.5610533-CDS-H-paniculata_contig4150:8560..8706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4150 8561..8706 -
1622930265.071857-CDS-H-paniculata_contig4150:9036..92301622930265.071857-CDS-H-paniculata_contig4150:9036..9230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4150 9037..9230 -
1691481216.571413-CDS-H-paniculata_contig4150:9036..92301691481216.571413-CDS-H-paniculata_contig4150:9036..9230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4150 9037..9230 -
1622930265.0924702-CDS-H-paniculata_contig4150:9602..97081622930265.0924702-CDS-H-paniculata_contig4150:9602..9708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4150 9603..9708 -
1691481216.5817587-CDS-H-paniculata_contig4150:9602..97081691481216.5817587-CDS-H-paniculata_contig4150:9602..9708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4150 9603..9708 -
1622930265.1144903-CDS-H-paniculata_contig4150:12073..123201622930265.1144903-CDS-H-paniculata_contig4150:12073..12320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4150 12074..12320 -
1691481216.590556-CDS-H-paniculata_contig4150:12073..123201691481216.590556-CDS-H-paniculata_contig4150:12073..12320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4150 12074..12320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4150.10666.1prot_H-paniculata_contig4150.10666.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4150 8162..12320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4150.10666.1

>prot_H-paniculata_contig4150.10666.1 ID=prot_H-paniculata_contig4150.10666.1|Name=mRNA_H-paniculata_contig4150.10666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
MEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQA
SALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGR
PSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGN
VADAGLVAAMAALMRLKLPATRQIGDELFITKDAPTPLKIHHVPVPLTCG
VFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNT
CLQLCQQHAELLVKTLHAAAEVHKGEGKCNT*
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mRNA from alignment at H-paniculata_contig4150:7651..12353-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4150.10666.1 ID=mRNA_H-paniculata_contig4150.10666.1|Name=mRNA_H-paniculata_contig4150.10666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4703bp|location=Sequence derived from alignment at H-paniculata_contig4150:7651..12353- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCACTACTGTCGGGGACGGCGAGTATAAACGATGGAGGTGGAGGCCTT TCAGCGATTGGACCCGGAGAACTTCTACCGAAGGTTCATCAAGAATGGCG TCAGGCCGGACGGTAGGGAGCTGCGCGCAGTGAGGCCGATCTCGGTGGAT GTGGAGGTGCTGTCACCTGAGCACGTGCAAGCTTCGGCACTGGTGGGTCT GGGATCGACGAAAGTGCTAGCTGGTATCACGCTGGAAATCGGCCAGCCCG CTGAGAGTACACCACTGTATGGGATGCTAGGTAAGCATGTGCCCTTTGCC TTAGATTAGTTTGATGTGGCACATTTTACGTCTGCCTTGTTTCCTGAGTA GTTTGCAAATACGGGTTTCACAGTGGTTTGAAAACGTGACTATTTAGATA CTGGTGCTACTGCGGTTAGTAGGTGTTTACTGGGTGGTTCTGGCTGGCCT GCTGTCGTGTGTTGTCACGTTGTCATCCTACTCGCCGCCACCCACCAACA GCGAGTCGCTCGCTGTGGTTTAATCAATGGCCGAGGATAAGAAGCTAATC TAAGAGCACGTCAAACACTCAAAATAATATTGGAATATGTTCCAAAATTA TACCACATCATCCGCAGACCACTTTTTTTATGTGGTGGTATTTGTTGGAC AGGTCACACGGCTACGCCAGTGACGGTGACTACGTGGACGATGTCGCGGT ACCTCGAAATAGCAAGGCTGTTCACATGACCGGCTGGGAATCAGACTTGA CAGACGGCGAACCGAATTGTAAAATTAGGACACCTCACATAATCCTATGG CGAACCGGTTCCTGTTCTGGTCACGTCTATACGCAAAAAATGCCGGTCTC GCGAAAAGCGTCAAATATTTGGCTAGTCGACAGAACAACTGCGCGGTTTA TCACATGACCGAAATTACACATGATAAATTTGTCATAGTTTTCACCACTA CAACCAGTTTGCCGCAGGTTTTGTCATATAGTCCATTTCTACAATCGGTT CGCGGTCGTTTGTGTCTGATTCAAGCCGGTCCACGGTAGGCTGTCACATT TTTCATTGCTACTAACGGTTCGCGGTGGGTCATGTGATTTCCAGCCGGTC ATATGAAAAGCCGTGCTAACTAGCCCACGCACACGGACTCGATCACGCTC CCTACATGTAGGCACAATTAACATTTAAACTTCGTGCTATATACACAGAC TCGCTGCGCTCGCCGTGGCTTGCTCACGCTCACTCGCATATAGAGCAATA ACTTTGTACCCCCCGGACAACTACGAATAGTTGCAAATGGTTTTCACAAG AAACTGGGAATATTCGCCTGAGTTTCAGAATGACCTCGTGTATTTTATGT GTCCAGGACCATCCACGATTGCTAATAATATTCATAAATCAAATAGGTAG GAGTGGGTATTTTCTTCCACTAGTTCACTCATTCTGAAACTCAGGCGAAT ATTTTCTTCAGTTTCTTGTGAAAACCATTCGCATCTATTCGTAGTTATCC GGTGGTAACTTCGCAAAGTGCGAGAAATGTCCTGTGAAGTCAGAAATGCG GGCGTGCAACGTCGACATTCAACGTTTATACACAGACCCAGGACATATTG AGATACCTATCATGGGAGGTACAGATGCCGAAGAAATTCAAGCTCGGAGA ACTTATGTACATTGAAATGTATACGGGGGGTCTAATGCACCAACGGTTTT AGCACTTCAGCTGTTCAGGTTGCCGCTCTCCCGACACTTCTCACGCCTTC TTCAGGGCCAGCCTGCCTTTCTCGAGCTATCTATACCCTCCCCACGTACA AACGCGTTTTCCCTACTCTCGTGTCTACGTTGCCAGACGTTCCAACAGCC GCCAGATAAAAGAGTGCAAGGCAATAATGGAAAACTTTTAGTGTACTGCC TGTTCATGGTTTCTCCGATGCCCTCTCTCTCTCTCTGTCCAAGGACAACG TCCCCATGGGCTTGCGTCTCTGTTGGGTTTATATTGACCTGCCTTCCCGT GTAGCGGTGGGTACCTGTGGTTGTTCTTGCGTGCCTGCGGAATGTGTACC GAGAAAGGTACTTCAGTCTGTGCTGTCTTATGCACTGGACATGGTGGCCA TGTGCGAGCTGACCGTTTCCAAGCTGGATCCAAGACAGGCAAAATACGTG CGGCGGTTCAGTCTCATTCAAATTGTGGGAGTTTTGACCTGAAATTTTGA GGAGATGAGCGCATCATGAATTCCGAGGTATCTTTGGAGCGTGCATTTAA TTTTGTTTTTATTCCGATTTTACAGACATTTTCTTGATTTTCGAGTTTGA AGACCTTTCCATATCTCAAGAGCAGAAAAAAAAATGACGCTCCATAGAAA CCTCGGTATTCATGATGCGCTTATCTCCTCAAAATATTAGGTTAAAACTC CCAAAATCCGAATGAGACTGACCTCGCAAGCCAAATTTTGGGCAATTCAG TCTAAACAAGGTATAATCGAAAGATCAGTTAAACGTCTCACAAATTCGGA ACGAAAAAAATCAACTAAAAACCTCCAAGCAACATACAGCCCGGGAAATG TCGGGAAGGTGTACGACTTTCCATGGTGCTTATATTTCGCTTACTCTGTC GACTGCATAGTTCGTATTGCACGCGTGTTTGTGTGAGCTTGACAGATGTG GAGATTAAGCTTACTCCACTATCTTCCACCAAGTTTGCTGCCGGGCGACC ATCGGAGCAAGCGCACGCAGTGGGGAACTTCATCAAGACCTCCATCGTAG AGTGAGTTGCTTAGATGGTCACTCGTCTCCTAGCATGTAGCGCGATGCAT ATAAAACGAAGCTCGCCTGACCATCGGCAGGCGGTCCATGTTGTACAACT GGGCACGTTTCAGTTGATATATTGATACCCCAAAGTTTAAAGTTTACACG CACACAACCTAATTTGCCTCATGTCTCAAGTTCACGTTTAATGCGGTATA TCACAGATGCCATTGTCGCAAGTTGAGCGTTTTGTTAATATGCGTATTTT CAGTAGGTGGGTCTACCACTTGATTCTGATCATGTTTGCTTCGCACGTCG CAGTACGGCACGGTGGACAAACTACAGGGAACTGATGATTTTGCTGCTTG TCATGCGCTATGTTCGCTGTCAGGTCTGGAGCGTTGCTATTGGAAGATCT TTCCTTAGAACCCGGCATCCACGCGTGGAAGTTATGTATTGACATTGTTT GCTTAAGCTTTGACGGAAACGTGGCGGATGCCGGCCTTGTGGCAGCGATG GCCGCACTAATGCGGTTGAAACTTCCTGCAACACGTCAAATTGGCGATGA GCTTTTCATTACCAAGGGTGGGTGCTGGCACTTAAAACCACTTTTGATGA TTGTTTGCAGGAAGTTCCATGGGTGCATTACAGGTGAAAGTATGCGTTGC GATAGTTGAAAAGTGACCTGGGCTGTATTAGCCGGTTGTGTTCATTGGGG TTATACGGGAAAATGTTCGTGGAGGATCTGCAACGACTCAAAAAGTAGCA TGCGCCCTTACACTGTCGGGATAGTAGTTCTTCCCTTCTAAACGAACAAG TGAAGGTATAAACATTGTCAGCTTGTGATTTTCTTCCATGCCACCCTTGT GTTTTTCGTACTTGTGCCTGTACGCATCATCGTGGAACATGGATCAGATG CTCCAACGCCACTCAAAATACACCATGTTCCCGTTCCGCTGACATGCGGT GTTTTTGATGGCATCATCGTGACTGATCCGTCCCTGCTAGAGGAGGACCT TATCACGACGCACGTGACTGTGGTATCTACTGCGACTGGTCAGGTGACGC TTGTTGTTGTCTTGTTGTATGTTGAGAACAATTCGGACAGATCGTATAGT CCCAATAGGATGGATGATTCCCCTGTAGATTTCACCACGTCTCCGTGTAT CAGGCATAAAATACCAACATTTACACTGTTGTATGTACATATGTTCGCCT AACTTCGGTTTTGCCGTGTTTCTATTCAGGTTACACTGTTGTATGTACAT ATGTTCGCCTAACTTCGGTTTTGCCGTGTTTCTATTCAGGTGTGCGGGGT CCACAAACCTGGTGGCAGCTGTACGTCTGGTCAGCAACTCAATACATGTT TGCAGCTTTGCCAACAGCATGCAGAGTTATTAGTAAAGACACTACATGCG GCTGCTGAGGTTCACAAGGGAGAGGGGAAGTGCAACACCTGACCTGAGCC CTAACCGTCACTCGAGCGTAGTAGCAACTAGAATAGATGGGTCAGAGCGG AAAGGGGCACTTGATGTAACGCCAACGGCCATGTAGGAGGTCTTGCTGTG GACGGCGCTGTAAGGAGCAGTGCTGGTCGCACACTATGAGTAGTAAGGCT GGTACTATCATGTTATGCTGATCAAGTTACCTCTTGTATATAGTTTACCG CCAAGCGATAAACTGATGCAAACTCGGACATGTGTTGTTGCGAGGGAAAG GGATAGTTGCGTGTGCTCACTCGAGGCACGCTCATGTCCGGCTGGAGACG ACCTTTTCTTCAAGTGCTGGCGGGGACGACATATGGAAGCATCATGCTCT CTTCCACATCGAGCCCAGAGATTACAAATTTGATTACAAATAATAAATAT AATATTTGGGGTGAAACATCGATTGGTGTATACTAATCCGCCGATATGCA TCGGATATTTGAATGTAAATGTATCGGATGACGATATTATCCACAATTCT GGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4150:7651..12353-

>mRNA_H-paniculata_contig4150.10666.1 ID=mRNA_H-paniculata_contig4150.10666.1|Name=mRNA_H-paniculata_contig4150.10666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig4150:7651..12353- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTGGAGGCCTTTCAGCGATTGGACCCGGAGAACTTCTACCGAAG
GTTCATCAAGAATGGCGTCAGGCCGGACGGTAGGGAGCTGCGCGCAGTGA
GGCCGATCTCGGTGGATGTGGAGGTGCTGTCACCTGAGCACGTGCAAGCT
TCGGCACTGGTGGGTCTGGGATCGACGAAAGTGCTAGCTGGTATCACGCT
GGAAATCGGCCAGCCCGCTGAGAGTACACCACTGTATGGGATGCTAGATG
GAGGTGGAGGCCTTTCAGCGATTGGACCCGGAGAACTTCTACCGAAGGTT
CATCAAGAATGGCGTCAGGCCGGACGGTAGGGAGCTGCGCGCAGTGAGGC
CGATCTCGGTGGATGTGGAGGTGCTGTCACCTGAGCACGTGCAAGCTTCG
GCACTGGTGGGTCTGGGATCGACGAAAGTGCTAGCTGGTATCACGCTGGA
AATCGGCCAGCCCGCTGAGAGTACACCACTGTATGGGATGCTAGATGTGG
AGATTAAGCTTACTCCACTATCTTCCACCAAGTTTGCTGCCGGGCGACCA
TCGGAGCAAGCGCACGCAGTGGGGAACTTCATCAAGACCTCCATCGTAGA
ATGTGGAGATTAAGCTTACTCCACTATCTTCCACCAAGTTTGCTGCCGGG
CGACCATCGGAGCAAGCGCACGCAGTGGGGAACTTCATCAAGACCTCCAT
CGTAGAGTCTGGAGCGTTGCTATTGGAAGATCTTTCCTTAGAACCCGGCA
TCCACGCGTGGAAGTTATGTATTGACATTGTTTGCTTAAGCTTTGACGGA
AACGTGGCGGATGCCGGCCTTGTGGCAGCGATGGCCGCACTAATGCGGTT
GAAACTTCCTGCAACACGTCAAATTGGCGATGAGCTTTTCATTACCAAGG
GTCTGGAGCGTTGCTATTGGAAGATCTTTCCTTAGAACCCGGCATCCACG
CGTGGAAGTTATGTATTGACATTGTTTGCTTAAGCTTTGACGGAAACGTG
GCGGATGCCGGCCTTGTGGCAGCGATGGCCGCACTAATGCGGTTGAAACT
TCCTGCAACACGTCAAATTGGCGATGAGCTTTTCATTACCAAGGATGCTC
CAACGCCACTCAAAATACACCATGTTCCCGTTCCGCTGACATGCGGTGTT
TTTGATGGCATCATCGTGACTGATCCGTCCCTGCTAGAGGAGGACCTTAT
CACGACGCACGTGACTGTGGTATCTACTGCGACTGGTCAGATGCTCCAAC
GCCACTCAAAATACACCATGTTCCCGTTCCGCTGACATGCGGTGTTTTTG
ATGGCATCATCGTGACTGATCCGTCCCTGCTAGAGGAGGACCTTATCACG
ACGCACGTGACTGTGGTATCTACTGCGACTGGTCAGGTGTGCGGGGTCCA
CAAACCTGGTGGCAGCTGTACGTCTGGTCAGCAACTCAATACATGTTTGC
AGCTTTGCCAACAGCATGCAGAGTTATTAGTAAAGACACTACATGCGGCT
GCTGAGGTTCACAAGGGAGAGGGGAAGTGCAACACCTGAGTGTGCGGGGT
CCACAAACCTGGTGGCAGCTGTACGTCTGGTCAGCAACTCAATACATGTT
TGCAGCTTTGCCAACAGCATGCAGAGTTATTAGTAAAGACACTACATGCG
GCTGCTGAGGTTCACAAGGGAGAGGGGAAGTGCAACACCTGA
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