mRNA_H-paniculata_contig4150.10666.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: D7FJJ9_ECTSI (Ribosomal RNA-processing protein 43 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ9_ECTSI) HSP 1 Score: 429 bits (1104), Expect = 3.710e-147 Identity = 206/272 (75.74%), Postives = 241/272 (88.60%), Query Frame = 1
Query: 34 MEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATRQIGDELFITKDAPTPLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAAAEV 849
MEVEAFQRLDPENFYRRF+KNGVRPDGRELRAVRPISVDV VLS E VQASALVGLGSTKVLAGI+L++G P+E+TP+ GMLDVE+KLTPLSS+KF++GRPSEQAH + F+K SIVESGAL+L DL+++ G AWKLC+DIVCLSFDGN+ADA L+AAM ALMRL+LP TR+I DE+F+T+D PT L + VPVPLTCGVFDGII+ DPSLLEE+L+TTHVTVVST+ G+VCGVHKPGGSC SG+QLN CLQLCQQHA+ L +TL AA +
Sbjct: 1 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAHVLSTFVKNSIVESGALVLTDLAIDDGAFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPTQLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTVVSTSEGKVCGVHKPGGSCASGKQLNECLQLCQQHAKQLTQTLAAAVRI 272
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A836C8N5_9STRA (Ribosomal RNA-processing protein 43 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N5_9STRA) HSP 1 Score: 258 bits (659), Expect = 1.250e-79 Identity = 135/282 (47.87%), Postives = 183/282 (64.89%), Query Frame = 1
Query: 34 MEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATRQIGD-ELFITKDAPTPLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVST-----------ATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAAA 843
MEVEAFQ+LDP+ FYR+F+ GVRPDGR L+ VR ++V VL+ HV ASALV LG TKV+ GITL++GQP+++ P G ++V + LTPL S+ F+ GRPSEQA A+ I+ + S EDL +E AW+LCID+ CLS++GN ADA L++ A L+RL+LP T D E+ + + TPL + HVP+PLT GVF+G +V DPSLLEEDL+ +TVV + +VC VHK GG+C + L L L + HA+ ++ L AA
Sbjct: 1 MEVEAFQKLDPQTFYRKFLSEGVRPDGRGLQEVRDVAVSCGVLTAPHVAASALVTLGDTKVVTGITLQVGQPSQAEPGCGDVEVSVHLTPLCSSMFSVGRPSEQAQALEALIRDVLTASRPFRREDLLIEARRFAWRLCIDMYCLSYEGNAADAALLSVAACLLRLRLPPTVITPDGEVLVAEGEGTPLPVSHVPLPLTFGVFEGALVADPSLLEEDLVAAALTVVQSLDEGKGGSGGGGAARVCAVHKAGGACVAPALLARALALGRSHAQRVLPVLRGAA 282
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: M4BB92_HYAAE (Ribosomal RNA-processing protein 43 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BB92_HYAAE) HSP 1 Score: 190 bits (482), Expect = 1.710e-53 Identity = 102/274 (37.23%), Postives = 160/274 (58.39%), Query Frame = 1
Query: 31 TMEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASA-LVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPAT--RQIGDELFITKDAPT-PLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAA 840
+ + F+RL P + R+ +++ VR DGR + A R + V+ H AS+ LV LG T VL I L +G PA +TP G + +++ LTPL S +F+ GRPSE+A ++G+ + ++ S + +EDLS+ G WKL +D+ C++ DGNV DA L + MAAL LKLPAT + + + I D T PL + + V D ++ DP+ EEDL + +++ T GQ+CGVHK GG+ + + C+Q+ +Q+A +L K + A+
Sbjct: 10 SFSAQTFKRLFPAEYARKCLQSNVRVDGRSIEATRTAQLQTNVV---HTAASSSLVKLGKTSVLTAIKLAVGTPAVATPDQGEIAIQVHLTPLCSNRFSVGRPSEEAQSIGSQLTRIVLGSRVVEMEDLSIAKGQSTWKLMVDVFCVNHDGNVLDAALASVMAALQTLKLPATSINEADNVVSIVPDGDTMPLCVRFGAYATSFAVVDSTVLIDPTSEEEDLASAVLSIAFTTEGQICGVHKAGGTIVAPDVMQHCMQIAKQNATVLAKLVDAS 280
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A2D4CFL6_PYTIN (Ribosomal RNA-processing protein 43 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFL6_PYTIN) HSP 1 Score: 189 bits (480), Expect = 3.890e-53 Identity = 103/274 (37.59%), Postives = 158/274 (57.66%), Query Frame = 1
Query: 31 TMEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATRQIGDELFITKDAP----TPLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAA 840
+ + +++L P F R+ I+N VRPDGR L+A R + + + E +S+LV +G+T V+ I L +G PA +TP G + ++ LTPL ST+F+ GRPSE+A ++G+ + + S + + LS+E G AWKL +D+ C+ DGNV DA L++ MAAL L+LPA I + + P TPLK+ H T +G IV DP+ EE L ++ ++ Q+ GVHKPGG+ + Q L++C+Q + A LL T+ A
Sbjct: 7 SFDAAMYRKLFPREFVRKCIENDVRPDGRRLQAARAVHIQTGAI--ETAASSSLVKIGNTTVMTAIKLAVGTPAVATPDQGEIAIQAHLTPLCSTRFSLGRPSEEAQSIGSQLMRIVTGSRVVEMSTLSIERGKSAWKLIVDVYCIDHDGNVHDAALMSVMAALKTLRLPAV-VISESDHVVSLQPDGESTPLKVQHSVYSTTFADLEGRIVVDPTSEEESLASSVFSITYNTQEQLAGVHKPGGALLAPQTLHSCMQAAKTRASLLHSTVERA 277
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A6U1QCI5_9STRA (Ribosomal RNA-processing protein 43 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QCI5_9STRA) HSP 1 Score: 187 bits (476), Expect = 2.810e-52 Identity = 113/305 (37.05%), Postives = 157/305 (51.48%), Query Frame = 1
Query: 34 MEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATRQIGDELFITKDAPT------PLKIHHVPVPLTCGVFDG---------------------------IIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAAAEV 849
MEVEAFQRL PE FY+RF+ G+RPDGR+ +R +++D+ VL H SA+V LG+TK +A ++L+IGQPA TP G + V + L PL F A + A + +F+ + G + E L + PG AW++CIDI+CL+ GN+ D L AA++AL +LP + P L++ H+PV LT GVF ++V DPSLLEE L+ + VTVV GQ+ V KPGG G LN CL LC ++ L A +
Sbjct: 1 MEVEAFQRLAPEGFYKRFVSKGIRPDGRKFHEIRKMNIDLGVLPLTH--GSAMVRLGATKAVAAVSLQIGQPATLTPNCGEISVGVALRPLCHPNFPASQHCRTAQQMESFLTRLLNTCGIVSPESLCITPGAAAWRVCIDILCLNHQGNLIDVCLAAAVSALRCTRLPQLEAPDHPGGAYQIHPVGAGESRALELVHIPVALTLGVFPALSHHSGTTEHGTGDRDTPPGGGGGKMPVLVADPSLLEEGLMESVVTVVRNERGQINAVFKPGGCKLPGDCLNVCLALCTSQHKIFSSLLAEATAM 303
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A2P4XYR1_9STRA (Ribosomal RNA-processing protein 43 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XYR1_9STRA) HSP 1 Score: 182 bits (463), Expect = 1.040e-50 Identity = 96/269 (35.69%), Postives = 153/269 (56.88%), Query Frame = 1
Query: 31 TMEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATRQIGDELFITKDAP----TPLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVK 825
+ E ++++ P + R+ + N VRPD R + A R + + V+ + +S+LV LG T VL I L +G PA +TP G + +++ L+PL S +F GRPSE+A ++G+ + IV S + +E LS+ G AWKL +D+ C+ DGNV DA L + MAAL LKLPAT + + + P TPL++ H + + D +++ DP+ EED T ++ + GQ+CGVHK GGS + + C+ + ++ AE L +
Sbjct: 9 SFSAEMYRKVFPAEYMRKCLANKVRPDSRTIEASRAVQLQTNVV--QTAASSSLVKLGKTSVLTAIKLAVGTPAVATPDQGEIAIQVHLSPLCSNRFTVGRPSEEAQSIGSQLTRIIVGSRVVEMESLSIVKGQSAWKLMVDVYCVDHDGNVLDAALTSIMAALRTLKLPAT-SVNEADNVVSIVPGGDATPLRVEHGAYATSFAIVDDVVLIDPTSDEEDQATAVFSLSYSTNGQLCGVHKAGGSIVAPSVMQQCMHIAKRKAETLAE 274
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: G5AAV8_PHYSP (Ribosomal RNA-processing protein 43 n=3 Tax=Phytophthora TaxID=4783 RepID=G5AAV8_PHYSP) HSP 1 Score: 181 bits (459), Expect = 4.380e-50 Identity = 96/270 (35.56%), Postives = 158/270 (58.52%), Query Frame = 1
Query: 40 VEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPAT--RQIGDELFITKDAP-TPLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAA 840
+ +++L P + R+ + + VRPD R + A R + + +V+ + +S+LV LG T VL I L +G PA +TP G + V++ L+PL S +F+ GRPSE++ ++ + + IV S + +E LS+ G AWKL +D+ C+ DGNV DA L + MAAL LKLPAT + + + I D TPL++ H + V + ++ DP+ EEDL + ++ + GQ+CGVHK GG+ + + C+Q+ +++ E L K + A+
Sbjct: 15 ADMYKKLFPAEYVRKCLASKVRPDSRTIEAARAVQLQTDVV--QTAASSSLVKLGKTSVLTAIKLAVGTPAVATPDQGEIAVQVHLSPLCSNRFSVGRPSEESQSISSQLTRIIVGSRVVEMESLSIVKGQSAWKLMVDVYCVDHDGNVLDAALTSIMAALKTLKLPATSVNEADNVVSIVPDEDATPLRVEHCAYATSFAVVEDSVLIDPTSDEEDLASAVFSLSYSTNGQLCGVHKAGGTIVAPHVMQQCMQVAKRNTEALAKLVDAS 282
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A8K1CFV5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFV5_PYTOL) HSP 1 Score: 181 bits (458), Expect = 7.070e-50 Identity = 96/274 (35.04%), Postives = 155/274 (56.57%), Query Frame = 1
Query: 31 TMEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATRQIGDELFITKDAPT----PLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAA 840
+ + + +++L P + + I+N VRPD R L A RP+ + V+ + +S+LV +G+T V+ + L +G PA +TP G + +++ LTPL ST+F GRPSE+ ++G+ + I S + + DLS+E G AWKL +D+ + DGN+ DA L++ +AAL L+LPA I + + P PLKI H T G+ + ++ DP+ EE L + T+ + Q+ GVHKPGGS Q L+ C+ + ++ A LL + A
Sbjct: 13 SFDSDVYRKLFPREYVNKCIENNVRPDSRLLEATRPVHIQTNVV--KTAASSSLVKIGNTSVMTAVKLTVGTPAVATPDQGEIAIQVHLTPLCSTRFNLGRPSEETQSIGSQLTRIITGSRVVEMSDLSIERGKSAWKLMVDVYGVDHDGNIHDAALLSVIAALKTLQLPAVT-INESDHVVSIQPDGELMPLKIQHTVYSTTFGILNNRVIVDPTNEEELLASALFTITYNSNAQLAGVHKPGGSILEPQTLHHCMSIAKKRAVLLAAAIDKA 283
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A0L0HN85_SPIPD (Ribosomal RNA-processing protein 43 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HN85_SPIPD) HSP 1 Score: 179 bits (455), Expect = 2.950e-49 Identity = 101/275 (36.73%), Postives = 151/275 (54.91%), Query Frame = 1
Query: 25 V*TMEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLP-ATRQIGDELFITKDAPT-PLKIHHVPVPLTCGVFDG-IIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAA 840
V +++ E F+++ P ++RRF+ GVRPDGR L R + V ++ H SA+ LG T V+ GI EI +P P G + L PL S +F G PSE + ++ +I + S L L DL +E G W L DIVCL+++GN DA ++A +AAL ++LP AT D K+ T PLK+ P+ +T GVFDG I+ DP + EE +++ +TV+ G +CG+ KPGGS + L +CL+ + A ++ L A
Sbjct: 27 VFSLDSETFKKIHPTEYHRRFLSQGVRPDGRTLSRFRKAKITVGAITTAH--GSAMARLGETTVVCGIKAEITEPKTGAPRDGFIVPNFDLPPLCSPQFKPGPPSELSQSISEYINRVLESSKLLNLSDLCIEEGRAVWVLYADIVCLNYEGNAMDAAMLALVAALKHVRLPTATFYEADNAVRVKEQRTIPLKLSRTPISVTFGVFDGQFILADPDIEEEPHLSSQLTVIIEQNGGLCGMLKPGGSALGQETLTSCLEAARTRATHILGILEGA 299
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Match: A0A3M6VDK4_9STRA (Ribosomal RNA-processing protein 43 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VDK4_9STRA) HSP 1 Score: 178 bits (452), Expect = 3.720e-49 Identity = 97/273 (35.53%), Postives = 154/273 (56.41%), Query Frame = 1
Query: 31 TMEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQASALVGLGSTKVLAGITLEIGQPAESTPLYGMLDVEIKLTPLSSTKFAAGRPSEQAHAVGNFIKTSIVESGALLLEDLSLEPGIHAWKLCIDIVCLSFDGNVADAGLVAAMAALMRLKLPATR-QIGDEL--FITKDAPTPLKIHHVPVPLTCGVFDGIIVTDPSLLEEDLITTHVTVVSTATGQVCGVHKPGGSCTSGQQLNTCLQLCQQHAELLVKTLHAA 840
+ + FQ+L P + + + N VR D R + A+R + + V+ E +S+LV LG T VL I L +G PA +TP G + +++ L+PL S +F GRPSE+A +V + + + S + +E+LS+ G AWKL +D+ C+ DGNV DA L + MAAL LKLP T D + + + TPL++ H + V D ++ DP+ EEDL + + + GQ+CGVHK GGS + ++ C+Q +++ ELL K + ++
Sbjct: 4 SFSPDVFQKLFPVEYTHKCLMNKVRTDARTMDALRAVQLQTNVV--ETAASSSLVKLGKTSVLTAIKLAVGTPAVTTPDQGEIAIQVHLSPLCSNRFTVGRPSEEAQSVSSQLTRIFMGSRVVEMENLSIVNGQSAWKLMVDVYCVDHDGNVLDAALTSIMAALKTLKLPVTSVNEADNVVSIVPNEDATPLRVEHCAYATSFAVVDDTVLIDPTSDEEDLASAVFSFSYSTNGQLCGVHKAGGSIVAPNVMHQCMQKAKRNMELLAKLVDSS 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4150.10666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4150.10666.1 >prot_H-paniculata_contig4150.10666.1 ID=prot_H-paniculata_contig4150.10666.1|Name=mRNA_H-paniculata_contig4150.10666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp MEVEAFQRLDPENFYRRFIKNGVRPDGRELRAVRPISVDVEVLSPEHVQAback to top mRNA from alignment at H-paniculata_contig4150:7651..12353- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4150.10666.1 ID=mRNA_H-paniculata_contig4150.10666.1|Name=mRNA_H-paniculata_contig4150.10666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4703bp|location=Sequence derived from alignment at H-paniculata_contig4150:7651..12353- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4150:7651..12353- >mRNA_H-paniculata_contig4150.10666.1 ID=mRNA_H-paniculata_contig4150.10666.1|Name=mRNA_H-paniculata_contig4150.10666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig4150:7651..12353- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |