mRNA_H-paniculata_contig4148.10660.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4148.10660.1
Unique NamemRNA_H-paniculata_contig4148.10660.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4148.10660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4148contigH-paniculata_contig4148:4584..9803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size437
Cds size435
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4148.10660.1prot_H-paniculata_contig4148.10660.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4148 4584..9802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930264.0718367-CDS-H-paniculata_contig4148:4583..47301622930264.0718367-CDS-H-paniculata_contig4148:4583..4730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4148 4584..4730 +
1691481216.149568-CDS-H-paniculata_contig4148:4583..47301691481216.149568-CDS-H-paniculata_contig4148:4583..4730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4148 4584..4730 +
1622930264.0940924-CDS-H-paniculata_contig4148:8680..87541622930264.0940924-CDS-H-paniculata_contig4148:8680..8754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4148 8681..8754 +
1691481216.1678486-CDS-H-paniculata_contig4148:8680..87541691481216.1678486-CDS-H-paniculata_contig4148:8680..8754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4148 8681..8754 +
1622930264.1129334-CDS-H-paniculata_contig4148:9588..98021622930264.1129334-CDS-H-paniculata_contig4148:9588..9802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4148 9589..9802 +
1691481216.1834855-CDS-H-paniculata_contig4148:9588..98021691481216.1834855-CDS-H-paniculata_contig4148:9588..9802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4148 9589..9802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4148.10660.1

>prot_H-paniculata_contig4148.10660.1 ID=prot_H-paniculata_contig4148.10660.1|Name=mRNA_H-paniculata_contig4148.10660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
QLQQQIRVGASNSVPLSASSSPATRGQPAQARLSREELELRARRIKMVQV
KLHQMRHGCLEAGQMQQAANIDEKLKLYGARMHLVQTALQAMHPRLSPIP
STNAVAVAASQPPPPPGTAAGSTSLSSLSTLAAAAGTGPGGGSGG
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mRNA from alignment at H-paniculata_contig4148:4584..9803+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4148.10660.1 ID=mRNA_H-paniculata_contig4148.10660.1|Name=mRNA_H-paniculata_contig4148.10660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5220bp|location=Sequence derived from alignment at H-paniculata_contig4148:4584..9803+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATTGCAGCAACAGATTCGCGTGGGTGCGTCGAACTCTGTGCCATTATC
TGCCTCCAGCAGCCCGGCCACCCGCGGGCAGCCAGCTCAAGCGCGCTTAT
CCCGTGAAGAGTTGGAGCTTCGCGCACGTCGGATCAAGATGGTGCAGGTA
CATATATATATATATATATATATATATAATATATATATATACTCACTCTG
TCCCATATGTCTGTGACGTTAAGGGTGTAACTTGTGCAATGACCTTCAAT
CAAAAACAGTTTTTTGCACAGGATTCCTTGATGTTTTTCACATGAATTTT
ATTCTTCGCAGCTTTCCTCGGTCCCATAAATCCACCGTTCTACTGCCGCG
TCGAAAGCCTCTCGGTTGATTTTGACCGATTTTAGCAGACTTCCCGCACG
TTGCCTTTTCTTGGTTTTGGTGTGCTGTACCTCGAAATCTTTACCTCCTA
GCGCCTTCAAGACCTCATTTGTACCGCTTAAAGAGGCTCTGCCACACCCT
CTCTAAGGTTGCTGCGTTATACGCATCGTACACGCTCTTTACCCTCTCCA
CAAGACCGTCTATCGTATCGTAACGCTCCCTCCAAACGCTACTTTTCAGA
GATGCAAAGGACCCCAAATCGTTGATGTTGAGATCGGTGACTGCGCAGGC
TGAGTTATGATATTGATGCTCCACTCCACGTCGCTCCCGAGTTCGTTGGG
CTTTCGCGGCGTGTCTGTTCCCGTGTGGGGGGTCGCTCCGTCCTCCTGCG
TGACGACTTCCACAGCATCTTTTCGTTCAATGCTGGGAGAAAAGAATCCT
TGTACCACTCCTGGTACCACTTGGCGTCAATGGCCACGTCAAACTCGTAT
TGCTGCCCTCATTCATGCCAGGCCAACTTCCTCTGCGCCTGCTTGATGAC
GCAAACACGTCAGATTCCAATCTTGCCGTCGAAATCGTGGGAAGGATATG
GACGCGAAACGGCGCAGATGAACATAACCGTAGGAATATGACTATTGTGC
TGTTATTTAGTGGACCCTACCCTTTCCTCCCGGAGAATATGCGAACGCGA
TCCCTGTCGTGAATTAGGTAAAACCACGCTCCGTCGATGTGAATTGTTGG
GAAGCCGCTCCTGAAATTGTTGGGGTTCCTTGCTGCTTGGTCCACGATGA
AGTCTATCCGGTTCTTTCGGCCCGTCAGCGACAGAGGTGTGGTAATGCGC
CGTTTCACCGTCGTGGCGGCCATCTCTTTGAGCCGTCGCTGAAGGTTCGA
GCTGCCGACCACGACACCAACTTCGGCTAGCTTGGCAGACAGCTGATCGA
GGGTCAGGGTTCGATTCGCGGCGTTGAGTCTTCGAGTCGTGGTGTGCGTT
GTCGGTGTGCAGTCCGACGGCCGCCCGTTCGTGACGCTGACCTCAACGAA
AGGGTCTTGCCATGGTCCAGTTGTTCTTGTACACGCGCCCGAAGGTGTCT
GGGATATTGGTCGCCAACTTCAAATTGCTCCGCCAACTCTGGCCCAACAC
CTTTCGGAAGCCGGTTATTACCGGAAGGTAGCGCTAAAGCGTACCGTATG
GTCAATGCGTTTCGACCTTCCTCGCTCAGCTCGCGTTTCGACCTTCTCGC
TCAGCTCTCAATTTTTAGCCTGGGCTGATGGGCTCTCGGCAAAAGATGCC
GGACTCGCCGGAGTGGTAATGTTAATTGCGAAACTCGCGCTGCACACGGT
CTGGAGGCTGCACGAGAGTCATACAGCTCTTGGCGAGGTACTGAAATGGT
GTGTGACGATAGGGGAGAGGGGCGTTGTTGGCCGTAGGGCGCAGCGCAGC
CACTCACAATGGGGCCAAAAAATACTATTTTTTAGTTCCCCTTCTCACGA
ATTTTTCGTGATTATTTCGGAACAATATCCGAGAACGAAATAATTAGTCA
TAAAGCTTACGTCCATAGGTTCAATTCAAGCCATACAATGCAGAAAAAAC
TCTTCGTACTCGTAGAGAAACGGTCTACACAAGAAATGAGAAATCATATA
ATCGAAGACTTATGTGATGGAGGCAGTATGTATAATAAATGCTCTGTTTC
TTTACGTGATATTTTTTCGCGTAATATCTAGTACCCACACTCTCGAGAAC
CAAATGAATCTCATAACGATTGAAGTGCACCGCATAAACCAGAAGAAATT
TTTCGTAAATAGCGACAACCCACCTAGTGACGATATAGAGAGATGCGAGA
GCATGCTGCAGATTCACGAAACGTCCCCAATAACGATCCCTATGAGCAGA
GGGACTGATTTGACAAGAGTTTTGCTTCCCAAAGGCGAAATGTGTTGTTC
CCAGGCTGGTTGTAGTATAATGATTGGGTTCTTGCCTTCGTCTCCTGGAT
GGGCCAAGGAAACCCTCCAGAAATACACAATTCAAAACAAGAAGGCGCGT
GTTTTCTCCTGTATACTGCTGTACTCTTTGGGTGACGTGGGAAGCAGACA
TGTCCTATCTTAATACAGTAATACTCCCTTGTTAAGGTCATCGTAGCCCA
TGCCGTGCTTGATCGAAGAGGTGCAAGAAGTCCTGGTACTAGCTCACGAT
GAGGTCTCAAAGTATATGCCATGAGTCGTCCCTCCCGCCCCGCCGGTCGG
TACCTTTCCATCCCAGCCGTGATGAGTATGTTTGTGATTTGACCTTTCTG
TTGGAAGTAATTTTTTAATCTAGGAGTGAGTGTGGGGTACTTGTCGTAAT
CCGATGGAATATGCGAAATTCGTCTTGGAGGCCCACCTGTCGTCGTCCTT
GTTTTTCTCTTTTTAGGCACTTTTCTTATTTCGTATCGGGGTTTGTTAAA
ATGAAAGCGATTGAAAGACAGCTCTTGTTTCATCTCGTCTCGTCTTGTCT
TTATTTTTTATTTTTTTGGAGGAGGTGGGACACAATCATGTTTTGCATGT
CGTGGTTGTTGGACTATTATGGACCACGCGTCCTCGGGAGGATGGGATTT
TGGTCGTATCAGAGCGATTTCGGATAATCAGTCGCTCTTTCCTACGTTGC
TAAATGTGGCTCGATAATGCTTGTTCAGGCAATTTTTGATCTCTTAGCAC
CACTATCGTCTTCTTTTCGCAATCCCAGGATTCAAGTACCTCTCTGTCAC
ATCCTTCGATTTTACCTAATTTATTCATACAGATTTATCTCTCTTTTTCA
TGTCGGTGGCATTCTCCCACGATGTGGATTCGGTCCTCGCACGCACTACC
ACCGTCAGACTTGAATATATCGTCATCGTGCTCGTCTACTTTCCTGAATC
GTTTTCTACAATCCCTGAGGTCAAAAGTTCCTCTCCTATATTAGAACTCT
CAACAGTGTGCTTGCGTCTAATGGCCTACGAATGTACCGCTTCATCCCTA
TCCCTCCATCCAGTCTTGAATATGCTTCCAAACCTTCGTTACTTGGAGCT
TCTGTTTTTAGCCCTTGTTATCTTTCTGCAACTGCACCCGTTAGTTCCTC
CTTGAGTCCGCTCGTGTTCTTCAGAAATTTGCCAGTTCTTTCCACACTCG
ATAGGCGTTAGTCTTTTGAAGTGATCTCTACTCTGCTTTTCTTGCGATTT
TTTGGCAGTCTATTCCCCCCCCCCCATTTGATGTAGCCTGTGCTGCCTCT
TCAGCTTCCTCACGTCTCTTCTCCGTTTCTAGGGAATGTATGCCTAACTC
TTCCGTTTCTGCTGCGTTGCTGGTCCGCTGCCTGCGACCATGTTGGTAAT
TCCTTCGCTGCTTTCATCTGAACATCTCCCAACTCCTTGATTACAATATG
GTTTCCTTCCCATACTTGTTCTGCGTTGCTGACAGCGGAATGACGACACT
TTCCAAAAGTGTTTTGATACGCGTGCCAAGGTGCCGGTTGGCTAAATACC
GGGTTTTTACTGCCCGGACCTTCCCTTTTCCGGTTACTTTCTTGACGTGT
TATATAACCCACATACAGGCCTTCGAAAAGCCATCGCCGAGGATTCACCC
CCGACTAATGCCATTTCTCTTTTTGTTTGATCTTAAGATGTAAAAATATG
GCCATTTCGTTTCATTTCACCTCCGGTCCGGTCCGTTTCGGTCCGGTTCG
TTTTCTTTCCTGGCGTTTGAACCTGTTCGTGTCATGGTTGATCCCAGGTG
AAACTGCATCAGATGCGACACGGGTGTCTCGAGGCCGGTCAGATGCAGCA
GGCGGCCAACATCGACGAAAAGTGAGAATCCTCCTTTTTTTGCCGTTTTT
CTTTTTTCCAAGCCTTTTCCCGATTATGTATACCGTAAATATGGCGAGAC
TCGGATACGACGCGATTCATTTCCACAATTTCGTTTGTTTTTTTAATTTC
GTTTGTTTTTTTTTAAGTGAAAGATTGATTGGAAGGCAAATCCGAGAAGA
ACTCCTCGCAAGATCCGGCAAACGTAAGAGTCACGCTTTTGAATCATGGA
CGTACGTGAGTAGGAGCGTTTGGGACCAACCCAACTGGGGTATTTTTTTT
AGTATTTGTTTTTCAAAATCGATTTTCTCGAGAGAACGAAAGTAAATCCA
TGGCCAAGAGCCCAGGTCTATCTTGTGACACAAGTCGATGGGTATATTTT
GCTCGAGTGGCCGTGATCGACGATCTAATGGCCTAATAACAGCTGGCTTA
GTCCGTAGCTGGCCGCATCTGGGACGATCTTGACCTGGCAATAGGAGCAA
CCGCACATACATTGCTAAAGTGAAAAAAACAGAAACAGAAAAGGTAATGA
TGTATATGGCTTGGACCATGACCAAGTTGTTTCAGGTATTAGGTAGTTAG
GTAGTTAGGTAGTTATCTCTAGTCAGTGACCGCCCACTAGTGAAGTCATG
CGGCTCCTTGCATTTGAAGGCTGTGAGGTACATGTGAGTACTCCCCCAAA
TAGACTTTAAATTGCTCATAAGTAAAATTTACTCAACGACTGCTACGTGT
ACGAGTGCTGGGTCTCACAATACGTATACCTCAAAGTTTTTGAGTAGCCT
CCCTCCCCCCCTTCCTCATGCCGCCCTCCTTCCTCCTCTCCACTTCCTGG
ACCAGGCTGAAGCTATACGGGGCTCGTATGCACCTGGTGCAGACAGCTCT
GCAGGCAATGCATCCCCGGCTCTCTCCGATCCCTTCCACGAACGCCGTCG
CCGTCGCCGCGAGTCAACCTCCTCCCCCTCCCGGCACTGCTGCTGGTAGT
ACCTCTCTTTCTAGTTTGTCTACCTTAGCCGCCGCCGCGGGCACGGGCCC
TGGTGGTGGTAGTGGTGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig4148:4584..9803+

>mRNA_H-paniculata_contig4148.10660.1 ID=mRNA_H-paniculata_contig4148.10660.1|Name=mRNA_H-paniculata_contig4148.10660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig4148:4584..9803+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATTGCAGCAACAGATTCGCGTGGGTGCGTCGAACTCTGTGCCATTATC
TGCCTCCAGCAGCCCGGCCACCCGCGGGCAGCCAGCTCAAGCGCGCTTAT
CCCGTGAAGAGTTGGAGCTTCGCGCACGTCGGATCAAGATGGTGCAGCAA
TTGCAGCAACAGATTCGCGTGGGTGCGTCGAACTCTGTGCCATTATCTGC
CTCCAGCAGCCCGGCCACCCGCGGGCAGCCAGCTCAAGCGCGCTTATCCC
GTGAAGAGTTGGAGCTTCGCGCACGTCGGATCAAGATGGTGCAGGTGAAA
CTGCATCAGATGCGACACGGGTGTCTCGAGGCCGGTCAGATGCAGCAGGC
GGCCAACATCGACGAAAAGTGAAACTGCATCAGATGCGACACGGGTGTCT
CGAGGCCGGTCAGATGCAGCAGGCGGCCAACATCGACGAAAAGCTGAAGC
TATACGGGGCTCGTATGCACCTGGTGCAGACAGCTCTGCAGGCAATGCAT
CCCCGGCTCTCTCCGATCCCTTCCACGAACGCCGTCGCCGTCGCCGCGAG
TCAACCTCCTCCCCCTCCCGGCACTGCTGCTGGTAGTACCTCTCTTTCTA
GTTTGTCTACCTTAGCCGCCGCCGCGGGCACGGGCCCTGGTGGTGGTAGT
GGTGGTGCTGAAGCTATACGGGGCTCGTATGCACCTGGTGCAGACAGCTC
TGCAGGCAATGCATCCCCGGCTCTCTCCGATCCCTTCCACGAACGCCGTC
GCCGTCGCCGCGAGTCAACCTCCTCCCCCTCCCGGCACTGCTGCTGGTAG
TACCTCTCTTTCTAGTTTGTCTACCTTAGCCGCCGCCGCGGGCACGGGCC
CTGGTGGTGGTAGTGGTGGT
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