mRNA_H-paniculata_contig41448.10655.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41448.10655.1
Unique NamemRNA_H-paniculata_contig41448.10655.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig41448.10655.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.560e-25
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 3 
Query:    3 AEICRNRGIRQEFTTRDRPQYNGVAERGIAMIESAGLSAQIQAKELFPSVKISSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKV-PQGMLPFLKPWIC----PQEAL*QTKAESC 356
            A +C    I+QEFT    PQYNGVAERG+ +IE A ++A+IQAK LF  V++   D LW+    WAC A+N TA  AN   +SPYE+WYG+  P    PF KP  C    P + L   K ESC
Sbjct:  173 ASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYPFSKPAYCRWQRPSKLL--PKGESC 293
[Close]
BLAST of mRNA_H-paniculata_contig41448.10655.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.430e-25
Identity = 60/123 (48.78%), Postives = 75/123 (60.98%), Query Frame = 3 
Query:    3 AEICRNRGIRQEFTTRDRPQYNGVAERGIAMIESAGLSAQIQAKELFPSVKISSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKV-PQGMLPFLKPWIC----PQEAL*QTKAESC 356
            A +C    I+QEFT    PQYNGVAERG+ +IE A ++A+IQAK LF  V++   D LW+    WAC A+N TA  AN   +SPYE+WYG+  P    PFLKP  C    P + L   K ESC
Sbjct:  393 ASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYPFLKPAYCRWQRPTKLL--PKGESC 513
[Close]
BLAST of mRNA_H-paniculata_contig41448.10655.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 4.630e-25
Identity = 60/123 (48.78%), Postives = 75/123 (60.98%), Query Frame = 3 
Query:    3 AEICRNRGIRQEFTTRDRPQYNGVAERGIAMIESAGLSAQIQAKELFPSVKISSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKV-PQGMLPFLKPWIC----PQEAL*QTKAESC 356
            A +C    I+QEFT    PQYNGVAERG+ +IE A ++A+IQAK LF  V++   D LW+    WAC A+N TA  AN   +SPYE+WYG+  P    PFLKP  C    P + L   K ESC
Sbjct:   59 ASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYPFLKPAYCRWQRPTKLL--PKGESC 179
[Close]
BLAST of mRNA_H-paniculata_contig41448.10655.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 6.660e-25
Identity = 59/121 (48.76%), Postives = 73/121 (60.33%), Query Frame = 3 
Query:    3 AEICRNRGIRQEFTTRDRPQYNGVAERGIAMIESAGLSAQIQAKELFPSVKISSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKV-PQGMLPFLKPWICPQEAL*QT--KAESC 356
            A +C    I+QEFT    PQYNGVAERG+ +IE A ++A+IQAK LF  V++   D LW+    WAC ALN TA  AN    SPYE+WYG+  P    PFLKP  C  +   +   K ESC
Sbjct:  409 ASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLFPKGESC 529
[Close]
BLAST of mRNA_H-paniculata_contig41448.10655.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.190e-24
Identity = 57/123 (46.34%), Postives = 74/123 (60.16%), Query Frame = 3 
Query:    3 AEICRNRGIRQEFTTRDRPQYNGVAERGIAMIESAGLSAQIQAKELFPSVKISSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKVPQGM-LPFLKPWIC----PQEAL*QTKAESC 356
            A +C    I+QEFT    PQYNGVAERG+ +IE+A ++A+IQAK LF  V++   D LW+    WAC A+N TA  AN    SPYE+W+G+       PFLKP  C    P + L   K E+C
Sbjct:   59 ASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPYPFLKPAYCRWQRPSKLL--PKGEAC 179
[Close]
BLAST of mRNA_H-paniculata_contig41448.10655.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.210e-24
Identity = 60/123 (48.78%), Postives = 74/123 (60.16%), Query Frame = 3 
Query:    3 AEICRNRGIRQEFTTRDRPQYNGVAERGIAMIESAGLSAQIQAKELFPSVKISSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKV-PQGMLPFLKPWIC----PQEAL*QTKAESC 356
            A +C    I+QEFT    PQYNGVAERG+ +IE A ++A+IQAK LF  V++   D LW+    WAC A+N TA  AN    SPYE+WYG+  P    PFLKP  C    P + L   K ESC
Sbjct:  805 ASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPYPFLKPAYCRWQRPSKLL--PKGESC 925
[Close]
BLAST of mRNA_H-paniculata_contig41448.10655.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.220e-24
Identity = 60/123 (48.78%), Postives = 74/123 (60.16%), Query Frame = 3 
Query:    3 AEICRNRGIRQEFTTRDRPQYNGVAERGIAMIESAGLSAQIQAKELFPSVKISSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKV-PQGMLPFLKPWIC----PQEAL*QTKAESC 356
            A +C    I+QEFT    PQYNGVAERG+ +IE A ++A+IQAK LF  V++   D LW+    WAC A+N TA  AN    SPYE+WYG+  P    PFLKP  C    P + L   K ESC
Sbjct:  512 ASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPYPFLKPAYCRWQRPSKLL--PKGESC 632
[Close]
BLAST of mRNA_H-paniculata_contig41448.10655.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.650e-24
Identity = 59/121 (48.76%), Postives = 74/121 (61.16%), Query Frame = 3 
Query:    9 ICRNRGIRQEFTTRDRPQYNGVAERGIAMIESAGLSAQIQAKELFPSVKISSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKV-PQGMLPFLKPWIC----PQEAL*QTKAESC 356
            +C    I+QEFT    PQYNGVAERG+ +IE A ++A+IQAK LF  V++   D LW+    WAC A+N TA  AN   +SPYE+WYG+  P    PFLKP  C    P + L   K ESC
Sbjct:  328 VCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYPFLKPAYCRWQRPTKLL--PKGESC 446
[Close]
BLAST of mRNA_H-paniculata_contig41448.10655.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.150e-24
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 3 
Query:    3 AEICRNRGIRQEFTTRDRPQYNGVAERGIAMIESAGLSAQIQAKELFPSVKISSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKV-PQGMLPFLKPWIC----PQEAL*QTKAESC 356
            A +C    I+QEFT    PQYNGVAERG+ +IE A ++A+IQAK LF  V++   D LW+    WAC A+N TA  AN   + PYE+WYG+  P    PFLKP  C    P + L   K ESC
Sbjct:  271 ASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPYPFLKPAYCRWQRPTKLL--PKGESC 391
[Close]
BLAST of mRNA_H-paniculata_contig41448.10655.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.240e-24
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 3 
Query:    3 AEICRNRGIRQEFTTRDRPQYNGVAERGIAMIESAGLSAQIQAKELFPSVKISSGDSLWSLRNLWACHALNCTATRANEGCLSPYELWYGKV-PQGMLPFLKPWIC----PQEAL*QTKAESC 356
            A +C    I+QEFT    P++NGVAERG+ +IE A ++A+IQAK LF  V++   D LW+    WAC ALN TA  AN    SPYE+WYG+  P    PFLKP  C    P + L   K ESC
Sbjct:  556 ASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLL--PKGESC 676
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41448.10655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR5_9PHAE2.560e-2547.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE3.430e-2548.78Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKK1_9PHAE4.630e-2548.78Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JB16_9PHAE6.660e-2548.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWE4_9PHAE1.190e-2446.34Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE1.210e-2448.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.220e-2448.78Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE1.650e-2448.76Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3Y0_9PHAE2.150e-2447.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K622_9PHAE2.240e-2447.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41448contigH-paniculata_contig41448:23..569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size547
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41448.10655.1prot_H-paniculata_contig41448.10655.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41448 115..357 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930263.3055336-UTR-H-paniculata_contig41448:22..1141622930263.3055336-UTR-H-paniculata_contig41448:22..114Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41448 23..114 +
1691481215.7935243-UTR-H-paniculata_contig41448:22..1141691481215.7935243-UTR-H-paniculata_contig41448:22..114Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41448 23..114 +
1622930263.3676243-UTR-H-paniculata_contig41448:357..5691622930263.3676243-UTR-H-paniculata_contig41448:357..569Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41448 358..569 +
1691481215.82192-UTR-H-paniculata_contig41448:357..5691691481215.82192-UTR-H-paniculata_contig41448:357..569Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41448 358..569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930263.3470774-CDS-H-paniculata_contig41448:114..3571622930263.3470774-CDS-H-paniculata_contig41448:114..357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41448 115..357 +
1691481215.8023064-CDS-H-paniculata_contig41448:114..3571691481215.8023064-CDS-H-paniculata_contig41448:114..357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41448 115..357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41448.10655.1

>prot_H-paniculata_contig41448.10655.1 ID=prot_H-paniculata_contig41448.10655.1|Name=mRNA_H-paniculata_contig41448.10655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MIESAGLSAQIQAKELFPSVKISSGDSLWSLRNLWACHALNCTATRANEG
CLSPYELWYGKVPQGMLPFLKPWICPQEAL*
back to top

mRNA from alignment at H-paniculata_contig41448:23..569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41448.10655.1 ID=mRNA_H-paniculata_contig41448.10655.1|Name=mRNA_H-paniculata_contig41448.10655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=547bp|location=Sequence derived from alignment at H-paniculata_contig41448:23..569+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCGAGATCTGTAGGAACCGGGGCATTAGGCAGGAATTTACTACACGC
GATAGGCCACAGTACAATGGTGTTGCTGAGAGGGGCATTGCAATGATCGA
GTCGGCTGGTTTGTCTGCCCAAATTCAGGCTAAAGAACTTTTCCCTAGTG
TGAAGATTTCGTCTGGTGATTCGTTGTGGTCGTTACGAAATCTCTGGGCG
TGTCACGCTCTGAACTGTACTGCGACAAGGGCGAATGAAGGCTGCTTGTC
GCCGTACGAATTATGGTATGGGAAGGTACCGCAAGGTATGCTTCCATTCC
TAAAACCGTGGATATGTCCACAGGAAGCGCTCTAACAAACTAAAGCCGAA
AGCTGTACGTTGTTATTACATAGCTCCTTCCCTCAACCGTCCGAGTGATT
CTGTACGCGTGTTTTTGAAGAGTGGTGCTCTTATAGACAGTAGAGATGCC
ACTTGGCAATGCGTTTCACCCGTCCCTACCACTGTACCAACGATTTCTCT
GCCAGATAATGGGGAGAATTCAGGAGGTGGGGAGGGAGGGAGAAAGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig41448:23..569+

>mRNA_H-paniculata_contig41448.10655.1 ID=mRNA_H-paniculata_contig41448.10655.1|Name=mRNA_H-paniculata_contig41448.10655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig41448:23..569+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCGAGTCGGCTGGTTTGTCTGCCCAAATTCAGGCTAAAGAACTTTT
CCCTAGTGTGAAGATTTCGTCTGGTGATTCGTTGTGGTCGTTACGAAATC
TCTGGGCGTGTCACGCTCTGAACTGTACTGCGACAAGGGCGAATGAAGGC
TGCTTGTCGCCGTACGAATTATGGTATGGGAAGGTACCGCAAGGTATGCT
TCCATTCCTAAAACCGTGGATATGTCCACAGGAAGCGCTCTAAATGATCG
AGTCGGCTGGTTTGTCTGCCCAAATTCAGGCTAAAGAACTTTTCCCTAGT
GTGAAGATTTCGTCTGGTGATTCGTTGTGGTCGTTACGAAATCTCTGGGC
GTGTCACGCTCTGAACTGTACTGCGACAAGGGCGAATGAAGGCTGCTTGT
CGCCGTACGAATTATGGTATGGGAAGGTACCGCAAGGTATGCTTCCATTC
CTAAAACCGTGGATATGTCCACAGGAAGCGCTCTAA
back to top