mRNA_H-paniculata_contig4143.10653.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4143.10653.1
Unique NamemRNA_H-paniculata_contig4143.10653.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4143.10653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4143contigH-paniculata_contig4143:9771..11712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4143.10653.1prot_H-paniculata_contig4143.10653.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4143 9771..11707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930263.171942-CDS-H-paniculata_contig4143:9770..98121622930263.171942-CDS-H-paniculata_contig4143:9770..9812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4143 9771..9812 -
1691481215.7510614-CDS-H-paniculata_contig4143:9770..98121691481215.7510614-CDS-H-paniculata_contig4143:9770..9812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4143 9771..9812 -
1622930263.193406-CDS-H-paniculata_contig4143:11560..117071622930263.193406-CDS-H-paniculata_contig4143:11560..11707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4143 11561..11707 -
1691481215.7623532-CDS-H-paniculata_contig4143:11560..117071691481215.7623532-CDS-H-paniculata_contig4143:11560..11707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4143 11561..11707 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930263.2092867-UTR-H-paniculata_contig4143:11707..117121622930263.2092867-UTR-H-paniculata_contig4143:11707..11712Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4143 11708..11712 -
1691481215.7705703-UTR-H-paniculata_contig4143:11707..117121691481215.7705703-UTR-H-paniculata_contig4143:11707..11712Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4143 11708..11712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4143.10653.1

>prot_H-paniculata_contig4143.10653.1 ID=prot_H-paniculata_contig4143.10653.1|Name=mRNA_H-paniculata_contig4143.10653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MHIKIQIPSRGSLTAPGSQANACNVPGVLATWRQRNPSFLPPLSRQTLQL
CSRCAVAAPPLDK
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mRNA from alignment at H-paniculata_contig4143:9771..11712-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4143.10653.1 ID=mRNA_H-paniculata_contig4143.10653.1|Name=mRNA_H-paniculata_contig4143.10653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1942bp|location=Sequence derived from alignment at H-paniculata_contig4143:9771..11712- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGGATGCACATCAAAATTCAAATTCCGAGCAGGGGTAGCCTGACTGCT
CCTGGATCGCAAGCTAACGCCTGCAATGTTCCTGGTGTTCTTGCAACGTG
GCGCCAACGCAATCCGTCGTTCCTCCCACCGCTCTCTAGGCAGACACTAC
AGGTATGCATGGGCCTCTGCACGAAGCCGCAAGCAGGACATATTCCTGTT
GAAAGTGCACAGACAGTTGGTACAGAAAGACTGTATAGGGAGGAAGTCAG
TTTGTTGACAGAGTGACACAGCGATGCAACTTGATAACTAGAAAACGGTC
AATATACGTCAAGTCACACCCCAGAGGCGCAAATGGTACCAAAGTATGAC
AAATATCAAAATCGCTCGCGCACTCACGCTGTAGAGCTGATTGGGATAGC
CGCCCGAGTTGACAATGCTCCCTGTGAGTAGCTGAACCAGAAACCCCAAA
CATGTTGGTCTGGGAGCGACGTTTTGTATGCGCTACAAGAGCCTCTATAT
AGGGCTGACGACCTGAAAAGAGCTGCCATTTTCCTGCCCCAAATTATTTT
ATGAAGTGGTTCCTTGTCGCGATTTCTTCATCTCTATCCCTATAAAGATG
GCGACCTTTGTAGCAGTTGCATGTACTTGCGGGCAAACCCACTGCTGACT
GCTCCTCGGAACGTTCCTACACACACAAAAAAAAAGCCTGAAACGTTTTT
TCATTTTTGTGTCCGCAAAAAGCTGGTGTATTGTCATCATTCCTGGGCCT
TGCAACATAGGTGCCAGTGCTGTAACAGCGCGACGCTCTCCGTGTTTGTC
ATGCGCATAGACCGGTCGTCACGATAAAACGAATGTTGAATATTTTATGG
GCATGAACATGGACTATCTGTGGTCCTTTTCTCGAACGAACGAACACTGT
CCTCGCCATTTTCCAACCCAGGCTGCGGGACGGGCCATGAGTGAACTGTG
TCCGAGGTAGCATTGATGGTAAGATTTTAATTCACACTTCAACTGTCGCG
AGAGCCTCATACTGGCCAAGATCGACGAACAATATCTAAGACATCGTGCA
TAGCTTAACTTTTGCCTACCTGAAATTTGTGACGCTCTGGAGATGACGTT
GAAGAGAACACCGTTTTCTTGTGTGTTGATATCACATACGCTCCTGATGA
TGTGCTCATGTCCCGTTTGTCAAACGGCGCTTGGGGTGCTAATGTTGCCA
CTATCGGGACATTCCTCGCATGTGTCTGATGTGTCCGTGGAGGTAAGTTC
GAGAGCGGTTATCGATTGGGGAGGCGTTTTTCACTGTTACTAATGTATGA
ATTGCTGTACTGAGACACGCATACTGCTTGACTGTGTCGCATACACCCCG
CAGACTCTTGAAAAACACACCATATTTTCAGGGATAAATACAGCTTGCCG
CAGGTATGGGCGAGGTCTGACCCTTTTCATAGTATCAAAGCAACAAGCAT
ACAGAGGTTGAATCTAAACTCTAGGCCAAGTAACTCAACACATACTGTAC
CTCTACACCTGTAACGCCAGGCACACACATACAAAAAGGAAAAAATCCCC
GAGGGGCAAGAACATGACACCCCGCCCACTTTTGGGGGGCCTGGGATACA
AATACTTTGAAGTAGCTACTGTTTTACCTTCCTTAGATGTCTATTCAGAG
CTTTTGTTTCACGCTCTGTGGACGTTTAATCGTCATTATGCATGTTTTGG
TCGTTACTAGGCCGGGTCCCCATACAGGGTAAGGTTGGGGTTCGTAAGCT
ATCCATAACCGTAACCTCAACCCTTTGGTCATTGCCCCAAGAGATTTCAA
GATTTATAACTTGCCCCCACGTTTTCCTTCCTTTGGGCCGGGGTCTGGCC
GGGCCTTATAAATGCCCTCGCGCTCCGGCGCGCGCACGACTCATAAACAG
CTTTGTTCTAGGTGTGCAGTCGCGGCACCTCCGCTCGACAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4143:9771..11712-

>mRNA_H-paniculata_contig4143.10653.1 ID=mRNA_H-paniculata_contig4143.10653.1|Name=mRNA_H-paniculata_contig4143.10653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig4143:9771..11712- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACATCAAAATTCAAATTCCGAGCAGGGGTAGCCTGACTGCTCCTGG
ATCGCAAGCTAACGCCTGCAATGTTCCTGGTGTTCTTGCAACGTGGCGCC
AACGCAATCCGTCGTTCCTCCCACCGCTCTCTAGGCAGACACTACAGATG
CACATCAAAATTCAAATTCCGAGCAGGGGTAGCCTGACTGCTCCTGGATC
GCAAGCTAACGCCTGCAATGTTCCTGGTGTTCTTGCAACGTGGCGCCAAC
GCAATCCGTCGTTCCTCCCACCGCTCTCTAGGCAGACACTACAGCTTTGT
TCTAGGTGTGCAGTCGCGGCACCTCCGCTCGACAAACTTTGTTCTAGGTG
TGCAGTCGCGGCACCTCCGCTCGACAAA
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