mRNA_H-paniculata_contig414.10645.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig414.10645.1
Unique NamemRNA_H-paniculata_contig414.10645.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig414.10645.1 vs. uniprot
Match: D7FRM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM7_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 6.570e-43
Identity = 101/198 (51.01%), Postives = 128/198 (64.65%), Query Frame = 1 
Query: 1351 ESFKILRRNSLRNEVDGTFDELEEFEDRNEASPE-TVTHQECVMLHRVLSDKTKLPSACSAPSSNSMQSVSALGPVSKPEE--------ESGLSNLVRRVTGAV----IGSTHP----KKELGGVVTEEQCRKLADYLNPSVGGLYLLPGACSSMLKVANSYAEGAESCDQDNAEVYAHAKKRNSYVAKAGY-PPTAC 1890
            + FK +RR++L NEVDG FD+LEEFEDRNE SP+  VTHQECV+L+RVLSDK+ LPSAC  P      +  A     +P+E        E+ +  LVRR+TGAV       T P    KKE+GG +TEEQC+ LADYL+PSVGG YLLP AC  +LK  +   E A+     NAE+Y   KKR++ +A+ GY PPT C
Sbjct:    7 DRFKGIRRDTLHNEVDGCFDDLEEFEDRNETSPQYRVTHQECVLLNRVLSDKSTLPSACFVPPGAEAAARRASSSSQRPKEPRPLPEDGETAVVQLVRRITGAVQPVLSSLTTPLHARKKEMGGTITEEQCQALADYLSPSVGGGYLLPTACFGLLKPPDE--EQAKMYVMQNAEMYVRLKKRHTGMAEEGYFPPTMC 202
[Close]
BLAST of mRNA_H-paniculata_contig414.10645.1 vs. uniprot
Match: W7TGX2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGX2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.850e-17
Identity = 66/184 (35.87%), Postives = 94/184 (51.09%), Query Frame = 1 
Query: 1342 MNNESFKILRRNSLRNEVDGTFDELEEFEDRNEASPETVTHQECVMLHRVL-SDKT-KLPSACSAPSSNSMQSVSALGPVSKPEEESGLSNLVRRVTGAVIGSTHPKKELGGVVTEEQCRKLADYLNPSVGGLYLLPGACSSMLKVANSYAEGAESCDQDNAEVYAHAKKRNSYVAKAGYPPTA 1887
            M  + FKI+RRNSL  EVDG +  LEE ED     P  V  +EC+ML RVL +DK   LP AC   +++                ++    L R      +   +   ++ GVV  ++C KL D L    GG+  LP +C++ML  A       +  + +NA+VYA  K+RNS+V K  +PPTA
Sbjct:    1 MQGKDFKIMRRNSLTAEVDGVWPNLEEEEDSY--VPHKVHMKECMMLRRVLGADKADSLPRACKLNATS----------------QANQGFLTR------LSHFNESSDVAGVVNIKECHKLQDSLRMVAGGVTFLPASCNAML--AKEEETLKDKFETENAKVYARLKRRNSWVGKEDFPPTA 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig414.10645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRM7_ECTSI6.570e-4351.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TGX2_9STRA9.850e-1735.87Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig414contigH-paniculata_contig414:17372..21595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002470.1
Exons3
Model size3409
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig414.10645.1prot_H-paniculata_contig414.10645.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig414 18713..20079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930262.187623-UTR-H-paniculata_contig414:17371..187121622930262.187623-UTR-H-paniculata_contig414:17371..18712Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig414 17372..18712 +
1691481215.2885406-UTR-H-paniculata_contig414:17371..187121691481215.2885406-UTR-H-paniculata_contig414:17371..18712Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig414 17372..18712 +
1622930262.2522457-UTR-H-paniculata_contig414:20079..215951622930262.2522457-UTR-H-paniculata_contig414:20079..21595Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig414 20080..21595 +
1691481215.3335407-UTR-H-paniculata_contig414:20079..215951691481215.3335407-UTR-H-paniculata_contig414:20079..21595Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig414 20080..21595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930262.2018366-CDS-H-paniculata_contig414:18712..188211622930262.2018366-CDS-H-paniculata_contig414:18712..18821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig414 18713..18821 +
1691481215.298411-CDS-H-paniculata_contig414:18712..188211691481215.298411-CDS-H-paniculata_contig414:18712..18821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig414 18713..18821 +
1622930262.2181337-CDS-H-paniculata_contig414:19343..195531622930262.2181337-CDS-H-paniculata_contig414:19343..19553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig414 19344..19553 +
1691481215.3118255-CDS-H-paniculata_contig414:19343..195531691481215.3118255-CDS-H-paniculata_contig414:19343..19553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig414 19344..19553 +
1622930262.231481-CDS-H-paniculata_contig414:19846..200791622930262.231481-CDS-H-paniculata_contig414:19846..20079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig414 19847..20079 +
1691481215.3243022-CDS-H-paniculata_contig414:19846..200791691481215.3243022-CDS-H-paniculata_contig414:19846..20079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig414 19847..20079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig414.10645.1

>prot_H-paniculata_contig414.10645.1 ID=prot_H-paniculata_contig414.10645.1|Name=mRNA_H-paniculata_contig414.10645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
MNNESFKILRRNSLRNEVDGTFDELEEFEDRNEASPETVTHQECVMLHRV
LSDKTKLPSACSAPSSNSMQSVSALGPVSKPEEESGLSNLVRRVTGAVIG
STHPKKELGGVVTEEQCRKLADYLNPSVGGLYLLPGACSSMLKVANSYAE
GAESCDQDNAEVYAHAKKRNSYVAKAGYPPTAC*
back to top

mRNA from alignment at H-paniculata_contig414:17372..21595+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig414.10645.1 ID=mRNA_H-paniculata_contig414.10645.1|Name=mRNA_H-paniculata_contig414.10645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4224bp|location=Sequence derived from alignment at H-paniculata_contig414:17372..21595+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCATTTTTAGCAAGAACAAACTCTCTGCTACACGCGTTTAGGTCTACC
ATCCTTTGTCCAGGGTAAGTGTAGTCTGGTCTGGTTTCTAAAGCTTTTGT
CTATCGAAGTAGGCACCTTCATTTGTCTATGAGTTTGTTTATGAGTTTGT
TGGTAAAAAACTGAAAAACTGGCTTCATTTTTTTCAACTTGGTGTATGAT
GGAACAGCAATTCAGTGCCTCGTGGAGAATCCAGAGAGTACAGCTACTAT
TTATGGTATGCTGTGCCCTCTGTGTAACCTTTACTCTCCGTCAAGCGATT
GATAAGATGGCTCCAATATTTTTTTGCTCAAAGACGGTTGCATCTTTCGT
ACAACGAATTTTGTTCTTTAGCGGTTGTTATAATATAATAGCGGGGTGTT
CTTTCATGGCTGGGTCCTATCGCCAGCTGGCGGTCCATTGTCTGTACTGT
CTTTACCATGGTAAATAGCGATGACAGAGGCGGGGACTGCTGGTGGTTTA
TCGTGTTGGATAAAAATAGCTGGTGGTCATGTTGTTTCTTTCTTCTGTCT
CTTTGTTCAGCATCAATAAGCATCGAAGTCAATTGTTGGTCAAAAGCTCC
GCCCAGGTTTGTATTGATGTCATTATGAAACACATATGACATGTAAAGGT
GTTCAGCGAGTTGGTCAGAGGTACAGCCGCTCTATATTATGTAGTTGCAG
GCAATACTTGGACCTCACTAAGGGAACAGTACATCAGTATTATAGCTCTA
TGTCCGTCTCTCTTTTCTGTCGCTCCAAGTATTTGGCGGTGATTTCTGGC
GTTTTTCAGCAGTGATGCAGGAAGTGTGCTGTGTCGTACTGTGGCAAGTG
AACATATGTTTGAATTTGCAGATCAGTGTAATATAGCTGTAGTGTGGCGT
GTAAAGCGTGGGTGAGACATGTGTTTTTCAAATGATCTAACTCGTTGACC
TTGGCACATCGGATTTCAGCTATAATAGCGATCATATATATTGATCAGAT
GAAAGGAGACCAGAGACCCCAAGGTTCATTTGGACACAAATGGATCTCCT
TCGCTGTCAGAGGGGTAAGGGTTAAGGCACAACCACCGCCATGTGGCTAC
ATGCTAGCGGTGGCCCAGTTCAAGTTATCTGTCCTTACAGTATCATCCAA
CTACGGTTTAACCACATATTTTGTATCGTGATATAACTACGAATGATCAA
GACATATGGCAGTAACATTCAAGTAACTAATTTCATTCGCCTACGCGTTC
TTTTACTCCAAGAAGTGCGTAGAGGAAATCACGATCGTCACACAGCCGGC
ATCCAAACTGTCTCCAGCAAGTTGTGACCACGAACAGCAGAATGAACAAC
GAAAGCTTCAAGATCCTTCGGCGTAACAGCCTTCGCAATGAGGTCGATGG
AACCTTTGACGAGCTTGAAGAATTCGAAGACCGGAACGAAGCAAGTCCCG
GTGAGTTTACGCCAAGTAGTCGTATCAGCATCGTCATCAGCAGGGTAGTC
CAGATAATACTCGGGAGTATCTCAACCATTGACTACTATAGATGGCTAAA
TTACAATGCAGTACAGCCACAAAGCGTTTCTTGAGACGGTACAACGAGAT
TGTGCAGAACCACGTCGGGACCGGGAGAACGATAGCCGGAAATAGTTGAT
CGCACGCATGAGGACGTGTGATATCCTCACTTGCGATCAGGGTCGATGAG
GTCAACGATTGTTGCCATCACCCCCAGTATTGGTCAAGTTGAGCCCTAGT
CACGAACGGCTTTACCCAGCCCCCTCCATCCCCGTACCATCAGTTGATTC
ACATGCTACACGGAAGCTCTAATGTTGCGATAGGTATAGCTGGATCTCTC
ACTAGGATCGACCACCTTGTTTCTGCCAGCATAAGGTGATACCAAGAATT
AAACGTTTTGATCCTTCCCAACCCGTCCCCGCTCCTACTACTTCCCCTTC
CGCTCCGTGCCCCGCTGGTAAGAAACGGTGACCCATCAGGAGTGTGTTAT
GCTTCACCGGGTTCTCTCCGACAAGACGAAACTGCCATCTGCTTGCTCTG
CGCCGTCGTCCAATTCGATGCAAAGCGTGTCAGCTCTGGGGCCAGTCTCT
AAGCCTGAAGAAGAGAGCGGCCTGTCGAACCTTGTCCGCCGCGTGACGGG
AGCCGTCATTGGGAGTACCCACCCCAAAAAAGGTCGGCTGTGCATCTATG
GCTGTGCTTGAAATAGTGCGGTCAAGATTTCCTGTGTGCTATCAAGATAT
ACCCTAATATACTAACTTACTGTTCGATATGTTCTTCAGTAATAAGGCAG
TCAGCTGTACATACAGCTGAACAGATGAACGCCCCAGGAACTCTCTTTGT
ATCACAGATAAACTCGTTCCTGCCATGGATATTTTGTCTTCGAGAACTGC
GCATCAACCCACCCCCCCATAGTTTCTTCGTTCTCTGTTGTTTATTCCCC
CATGAATACAAACGACACGCGACAGAGCTGGGCGGAGTTGTAACGGAGGA
GCAATGCCGGAAGTTGGCGGACTACCTCAACCCAAGCGTGGGCGGCCTTT
ACCTCCTCCCAGGGGCGTGCTCGAGTATGCTCAAGGTCGCTAACAGCTAT
GCCGAAGGGGCAGAATCGTGTGATCAGGACAATGCAGAGGTGTACGCACA
CGCCAAGAAACGCAACTCGTACGTCGCGAAAGCGGGCTATCCCCCTACCG
CGTGCTGACTTGTCATCGTGCGATCTCCATTGTATCTAGTTTAGAGTATG
CCTCAAGCCTTTGTAGTACTCGCCGATGGCGGGTCCGATAACGAGAAGAA
AGTGTTACTCGGTTGGGTTGGATTCGTCTTGCTCGGATGAATTCAAGGGA
TAAGGTGTCAAGGGATAAGGTTTTAGTAAGAGTTACAGATTGGCGTTGTC
TGGAGTGCACTCAAGCTGTTCGAAGAGGTTTCGTATTGATTTTTGCTTCT
TCAGTAACGGGGATGATGCCTAACGAATATAGCTTGGATTGGATATCTGC
TTTGTTATTTCTTTGGGATGCATTTACTACCGCATTTTTGGGTTATGCAG
GTGCATGTATGGGACACACTCCAGAGATGCGCAATGGTGTTTTGCTTGTC
TATGAACGTTTTGATGTTTACTATTTAGTTAGCACCATGCTTTGGGAAGA
ATTCATACTACATGAGCGGAAAGAAGCACGGAATCCCGTCCAGCGACTCG
CGTTTGTGATGTGATGTAGAGAGACTGATATGTTACATACTCGTTTAATC
GCGAAGACTGTGTATTTACTGCTGTAGAAGCTGTGAATTTGTGTAACCAA
ACTCTCTCTGTATGATTCATCGCTCGAATGTCGAATTTGGTGCTGCTTTA
TGCTGGAATATTCACTTGACATGGAGCTTATAGTGCGTTGAGAAAGAGGG
GCGTTGATCACGGTGAGAAGATGGCGTGGCACGAAACTGTGTTGTAGTAG
ATGGCAATTTGGGCAATTATTTGTAGATTTCTCCCGTGTGCTGCCCATCG
TCCTGCTCCCAAGTACTGCTTGGGGCTGTAGGAGTGTGTGACTGGTGTCG
CTCTGGTTTGTCCAGAGCTCGTGGACAAACACAAGACCAGCCGACGGGCT
GTTATTATTCAAGTGGTCATATTGGCACGCAAGAGAAGGTTGTATCCTTG
GTATTTGCTTGGTCAGGGGTAATGCCATGTGTAGAGGTGCGAGGCTACTA
CATTGTTCCAAAATTCTGCTGTTAATAGTGTACCATGCTCATTTGCCGAA
ATGGATCACCCTCGTCTGTTTTTTGTGCATCGCTATTCGGTCCTGAACTA
CACTATAACAGCCGATTCTCTCAGTGAGGATGAAGGGTTTGAGATATAAC
TTTCGTTGACGTACCAAACGGAAGAAAGCGGGGGGCGGCACGGACCTGCG
CCCAAACGGGTAGGGTAGCTCGTGAACTGAGCATGACTGGAAGTCTAGTC
GGAGGTCTTTCAGTGGGTGCAACCCCCACACTGCCTACTTGGTTCGGCCG
AACCGGGGTGGCGCCTACCCCACAGAGGAATAAATAACTCTGTTGTGTTT
AAGGAAATGTGACATCGGTACGGAAGCATCGGATAGAGGTTTTTGCCTTC
TTAGCCTTCCGGGGGTTGAAAGAAAAAAAAAAAGTGGACGGAAAATTATT
GTTCTCTTTAATAGCTGTCGAATGCCACTGCTCTTGATTGAATTCGGATA
TGTCAATCTCGAGATAAAAGGGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig414:17372..21595+

>mRNA_H-paniculata_contig414.10645.1 ID=mRNA_H-paniculata_contig414.10645.1|Name=mRNA_H-paniculata_contig414.10645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig414:17372..21595+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAACGAAAGCTTCAAGATCCTTCGGCGTAACAGCCTTCGCAATGA
GGTCGATGGAACCTTTGACGAGCTTGAAGAATTCGAAGACCGGAACGAAG
CAAGTCCCGATGAACAACGAAAGCTTCAAGATCCTTCGGCGTAACAGCCT
TCGCAATGAGGTCGATGGAACCTTTGACGAGCTTGAAGAATTCGAAGACC
GGAACGAAGCAAGTCCCGAAACGGTGACCCATCAGGAGTGTGTTATGCTT
CACCGGGTTCTCTCCGACAAGACGAAACTGCCATCTGCTTGCTCTGCGCC
GTCGTCCAATTCGATGCAAAGCGTGTCAGCTCTGGGGCCAGTCTCTAAGC
CTGAAGAAGAGAGCGGCCTGTCGAACCTTGTCCGCCGCGTGACGGGAGCC
GTCATTGGGAGTACCCACCCCAAAAAAGAAACGGTGACCCATCAGGAGTG
TGTTATGCTTCACCGGGTTCTCTCCGACAAGACGAAACTGCCATCTGCTT
GCTCTGCGCCGTCGTCCAATTCGATGCAAAGCGTGTCAGCTCTGGGGCCA
GTCTCTAAGCCTGAAGAAGAGAGCGGCCTGTCGAACCTTGTCCGCCGCGT
GACGGGAGCCGTCATTGGGAGTACCCACCCCAAAAAAGAGCTGGGCGGAG
TTGTAACGGAGGAGCAATGCCGGAAGTTGGCGGACTACCTCAACCCAAGC
GTGGGCGGCCTTTACCTCCTCCCAGGGGCGTGCTCGAGTATGCTCAAGGT
CGCTAACAGCTATGCCGAAGGGGCAGAATCGTGTGATCAGGACAATGCAG
AGGTGTACGCACACGCCAAGAAACGCAACTCGTACGTCGCGAAAGCGGGC
TATCCCCCTACCGCGTGCTGAAGCTGGGCGGAGTTGTAACGGAGGAGCAA
TGCCGGAAGTTGGCGGACTACCTCAACCCAAGCGTGGGCGGCCTTTACCT
CCTCCCAGGGGCGTGCTCGAGTATGCTCAAGGTCGCTAACAGCTATGCCG
AAGGGGCAGAATCGTGTGATCAGGACAATGCAGAGGTGTACGCACACGCC
AAGAAACGCAACTCGTACGTCGCGAAAGCGGGCTATCCCCCTACCGCGTG
CTGA
back to top