mRNA_H-paniculata_contig4138.10640.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4138.10640.1
Unique NamemRNA_H-paniculata_contig4138.10640.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4138.10640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4138contigH-paniculata_contig4138:10718..11866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size218
Cds size216
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4138.10640.1prot_H-paniculata_contig4138.10640.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4138 10718..11866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930261.8038042-CDS-H-paniculata_contig4138:10717..108011622930261.8038042-CDS-H-paniculata_contig4138:10717..10801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4138 10718..10801 +
1691481215.1720452-CDS-H-paniculata_contig4138:10717..108011691481215.1720452-CDS-H-paniculata_contig4138:10717..10801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4138 10718..10801 +
1622930261.8167233-CDS-H-paniculata_contig4138:10965..110381622930261.8167233-CDS-H-paniculata_contig4138:10965..11038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4138 10966..11038 +
1691481215.1825721-CDS-H-paniculata_contig4138:10965..110381691481215.1825721-CDS-H-paniculata_contig4138:10965..11038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4138 10966..11038 +
1622930261.8319166-CDS-H-paniculata_contig4138:11807..118661622930261.8319166-CDS-H-paniculata_contig4138:11807..11866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4138 11808..11866 +
1691481215.1909862-CDS-H-paniculata_contig4138:11807..118661691481215.1909862-CDS-H-paniculata_contig4138:11807..11866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4138 11808..11866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4138.10640.1

>prot_H-paniculata_contig4138.10640.1 ID=prot_H-paniculata_contig4138.10640.1|Name=mRNA_H-paniculata_contig4138.10640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
TWRQIAIDEIGDDGVLLTVVPDVDEGIKACLLWGNGVRAEARVAIMIMCR
HEACRFTGKEPKTNNIKKKTAS
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mRNA from alignment at H-paniculata_contig4138:10718..11866+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4138.10640.1 ID=mRNA_H-paniculata_contig4138.10640.1|Name=mRNA_H-paniculata_contig4138.10640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1149bp|location=Sequence derived from alignment at H-paniculata_contig4138:10718..11866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATGGCGTCAAATCGCGATCGACGAAATTGGTGATGACGGCGTGTTGCT
TACCGTTGTTCCCGATGTCGACGAGGGTATCAAGGTGAGTTTGAAGCGGG
GTTTCGAGACAGTGCTCTTTGAGATTGGCGAGCGCATGAAGCTATGTCTA
ATCTGTTCAACACATGTACGTGTATGCCCTGTCGTGTTTTAATCAGTCAG
CTGACTGTTTCGATTTTCCTTGCATGCTCGTTCAATTGTTGTGATCAGGC
TTGCCTTCTATGGGGAAACGGGGTTCGTGCGGAGGCTAGAGTGGCTATCA
TGATAATGTGTCGCCACGAAGGTTTGAAACACGTTCTCTGCCGCTGCAGT
GTATTTGGCTTCATGAATATTTACCATTCGAAACAAACGGCCGGGTAGGC
GGGGACCTTTCATTCCGGCATCAGGCCATGTAGGCTATGCTTTCGTGCAC
ATTGATACGCTGCCCGGTGTGGCGAAGATAGCATTTGGCAAAGTCTGGTT
ACACTTGTTGTCCGAATATTGTTTCACTCGCCTAGATGAGAATGTCAGCG
GGACGGAATGCTATCTATGCCTCCGTTTCGAAAGTGATTTATGATTGCTG
AAGGAATACAATCGCCTTGTCGTTGTCCTCCAGAAGTGACATCTGGATTA
CACACAGAGTGCTATCTGTAGGCTCGTCAAGATTGTTACTGTCAGGGCTA
TCTAAGCCATTGTCAAGCCCCGAAAATGATGCACCGCAGGCGTATCCAGC
TGTAGACCGATCAACTTTATTTCCCAAATTCCAGGAATAGTTTTATGTCC
TCTATCGCCTCTGCCTTGGGCATTTCGACGCTACTCCATCCGGAGAATTT
AATAACGCGCGTAGCAGCATCAAGTGAGCGATCAAACTCATAGCGTCTGC
GCTTGAAGATGAGAGATTCCGAAATACTTTCTCTCGGGGAGATCAGAACC
GCTCCCTTCGCTGATACATGACATTACTATCCAACGTGACTTGTGGAGGT
ACGGGCGAAATACCGATGTGGTCCGAACGAGGTGTTTTTACGCATTGCTT
GCCTTCCCCTCCGACCCTCAACGCTCCAACGTTGTTGTAGCGTGCCGTTT
CACGGGCAAAGAGCCCAAGACAAACAACATCAAGAAGAAGACGGCCTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4138:10718..11866+

>mRNA_H-paniculata_contig4138.10640.1 ID=mRNA_H-paniculata_contig4138.10640.1|Name=mRNA_H-paniculata_contig4138.10640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig4138:10718..11866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATGGCGTCAAATCGCGATCGACGAAATTGGTGATGACGGCGTGTTGCT
TACCGTTGTTCCCGATGTCGACGAGGGTATCAAGACATGGCGTCAAATCG
CGATCGACGAAATTGGTGATGACGGCGTGTTGCTTACCGTTGTTCCCGAT
GTCGACGAGGGTATCAAGGCTTGCCTTCTATGGGGAAACGGGGTTCGTGC
GGAGGCTAGAGTGGCTATCATGATAATGTGTCGCCACGAAGGCTTGCCTT
CTATGGGGAAACGGGGTTCGTGCGGAGGCTAGAGTGGCTATCATGATAAT
GTGTCGCCACGAAGCGTGCCGTTTCACGGGCAAAGAGCCCAAGACAAACA
ACATCAAGAAGAAGACGGCCTCCCGTGCCGTTTCACGGGCAAAGAGCCCA
AGACAAACAACATCAAGAAGAAGACGGCCTCC
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