mRNA_H-paniculata_contig4133.10632.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4133.10632.1
Unique NamemRNA_H-paniculata_contig4133.10632.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4133.10632.1 vs. uniprot
Match: D7FHX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX6_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.860e-11
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 2 
Query:  152 VTRRPGPPQVYSPYSPATLQLFDVLRNDGFTERQVQSLAEDERLGPVYAKVMKHCEPFWTAKNSKKVNKYLGFGACSARFMCPDEFFKWSQCKKSQERGENRSECLEFKEDADRCGVKMTQLMLRAALADDWY 550
            VT    P Q   P   +TL+LF       F+ R+   L +   LGP+Y  V   C  F        ++K   F  CS+R +CP E  +   C ++     + S C EF+++ +RCGVKM+Q +LRAAL+DDW+
Sbjct:   27 VTLNTPPTQEDIPQLLSTLKLF----RHQFSPRERHCLGKHPVLGPLYEGVQGKCGQF--------IDKPRRFAVCSSRQLCPKEQSQLLACIRTTR---DASMCHEFRDEVERCGVKMSQRLLRAALSDDWF 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4133.10632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHX6_ECTSI1.860e-1135.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4133contigH-paniculata_contig4133:7433..10789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006260.1
Exons3
Model size1145
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4133.10632.1prot_H-paniculata_contig4133.10632.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4133 7449..10197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930260.6444588-UTR-H-paniculata_contig4133:7432..74481622930260.6444588-UTR-H-paniculata_contig4133:7432..7448Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4133 7433..7448 +
1691481214.664084-UTR-H-paniculata_contig4133:7432..74481691481214.664084-UTR-H-paniculata_contig4133:7432..7448Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4133 7433..7448 +
1622930260.7319272-UTR-H-paniculata_contig4133:10197..107891622930260.7319272-UTR-H-paniculata_contig4133:10197..10789Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4133 10198..10789 +
1691481214.7190156-UTR-H-paniculata_contig4133:10197..107891691481214.7190156-UTR-H-paniculata_contig4133:10197..10789Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4133 10198..10789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930260.6749883-CDS-H-paniculata_contig4133:7448..77391622930260.6749883-CDS-H-paniculata_contig4133:7448..7739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4133 7449..7739 +
1691481214.674948-CDS-H-paniculata_contig4133:7448..77391691481214.674948-CDS-H-paniculata_contig4133:7448..7739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4133 7449..7739 +
1622930260.6930819-CDS-H-paniculata_contig4133:9296..94041622930260.6930819-CDS-H-paniculata_contig4133:9296..9404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4133 9297..9404 +
1691481214.692986-CDS-H-paniculata_contig4133:9296..94041691481214.692986-CDS-H-paniculata_contig4133:9296..9404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4133 9297..9404 +
1622930260.7136877-CDS-H-paniculata_contig4133:10059..101971622930260.7136877-CDS-H-paniculata_contig4133:10059..10197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4133 10060..10197 +
1691481214.7096944-CDS-H-paniculata_contig4133:10059..101971691481214.7096944-CDS-H-paniculata_contig4133:10059..10197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4133 10060..10197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4133.10632.1

>prot_H-paniculata_contig4133.10632.1 ID=prot_H-paniculata_contig4133.10632.1|Name=mRNA_H-paniculata_contig4133.10632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MTAMDDGGVPASSSEKAAASSQSAHSQVPKPTKQRQLMAAAPPTPVTRRP
GPPQVYSPYSPATLQLFDVLRNDGFTERQVQSLAEDERLGPVYAKVMKHC
EPFWTAKNSKKVNKYLGFGACSARFMCPDEFFKWSQCKKSQERGENRSEC
LEFKEDADRCGVKMTQLMLRAALADDWY*
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mRNA from alignment at H-paniculata_contig4133:7433..10789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4133.10632.1 ID=mRNA_H-paniculata_contig4133.10632.1|Name=mRNA_H-paniculata_contig4133.10632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3357bp|location=Sequence derived from alignment at H-paniculata_contig4133:7433..10789+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGCCTCTCTCTTCGATGACCGCAATGGATGACGGCGGCGTACCTGCAA
GCAGTAGCGAGAAGGCTGCAGCGAGTAGCCAGTCGGCGCATTCTCAGGTC
CCAAAACCAACAAAACAGAGACAACTCATGGCGGCGGCACCTCCAACCCC
TGTAACACGTCGGCCAGGGCCGCCGCAAGTGTATTCACCGTACTCGCCTG
CTACCTTGCAGTTATTTGATGTCTTAAGGAACGATGGCTTCACGGAGAGG
CAGGTGCAGAGCCTCGCCGAGGATGAACGTCTTGGACCAGTGTACGCGAA
GGTCATGGTGAGAGATAGAAAAGGGCAAAATGGAGCTACTACTCTCTGTA
CATGAAACGAAGTTTTACTAATAGTGGGCTGGTGACGGATCGTTGTTGAA
CAAAAACGGCTGTGGGGAAAAACGACGCACCAGTTAGAGGTGTCACATGA
TATGTGTAGCTCTCTATGCAACATTGAGGGTTTGATATTTACTTTCTTTC
ATTTTCCCCAACCATGATGCACCCCAAGGGTGTAGCTGTACACACACTGC
AGCCTCACACTCCGTAGTTCTTGTGTGCTCCACGAAGTACTTCGATGTAC
ATGCAATGGCGAAGGTCGATTTCGGAACAGTTTTGAATATGTAAAGCCAG
TGTTGCAACATTCTGCTGGGCAGTGCAGGGCTAGAGAAGGTATAGTCTGT
ACAGCAGACCTCGTCTGTTTGATCATTTTCGGTACGGTAGTCAGCGACAA
CATCAAACTGATTCGAATTCCGTTGTTTCACGACAAACATCAGCTATTAT
GTCCTCCTGTACCCCAATTAAAAACCAAACAGAAAACGAGATGGAGTTAC
CATTAAGTAACGCTCGCACACAAATATTGGGTAATCCCGTAGAAAACCCT
CCTGTACCCGATCCTGTCCGCAAAACGGAACGCGTATAGCTTATATCGTG
CTCGAGTTCGGTTGCTCCTTTTTCGTGCGAACCGATCCATCGCCACACGC
GATAACGCGTATCGTGCATTACCTACCCTCTGCGAGTTCGAGGCTGACAA
GGCGTCCTCCAACGCGCGGAGGCCTGATCTCAAAGACACATTGAATACAT
ACCACACATAACGACGTAGGTGTGTAAGAGCTCTCGCTTTGAGGTTGACA
AGCAAAACATTATATTCTATCGCAGACTCAGATTTGTTTCTCTATAATGA
AATCTCGGTATATTTTGCGTACCAAGGTTTAAAAGAATATAAATATGTTG
CACAAGAGCTCGAAAGTATTATTTTCTGATCAAATCTATCTGTTGTACGA
ATGTTGAATAGATAAGTATTCAAAAACTATATAAGATGTGTGACACTCTT
GTGAGAGTTCTGAAAATGGAGCTATTTTACATTCTCGTATCATACGGTAA
AAGCTTTGCACCCTACAAGGCCAATACTCGATGCTTACCCTTTCGTCCAT
GTGGAAGATCCTCGGTCATCACATCTTTAATGGCCAGCGCTGATGAGGAA
AACACGATACTACGATCATCACCGCGACAACAACATATTGCATGCTCAAG
ATAGATTATATTATATTAATCCTGGCATCACCTTCTATCTCTCTCTGGGT
GAAACATTTTTGCACCTCCTGCTGGCAGCCATCCACAAATCTCATTCTCC
GTCAATTCTCATTTATCCGTTCACATGATCCGGTGTTTAAACCAGGTGAA
CGAAAACTCAATGTGTTGGAGGGTCAACCGTGGGGAAAATGCCAATCTGA
GCGAGGGGAGACGAGCGTACGGAGTTATTTGTAACTGACAGTACGCATAC
ACGTGCCTCGCTATCTTGTTCTCCCCGTATGTTTCCCTTCTCGTCTCCTT
CCTGTTTGTCCCAGAAACATTGCGAGCCGTTCTGGACAGCTAAGAACAGC
AAAAAGGTGAACAAATACTTGGGGTTCGGCGCATGCTCGGCGCGATTCAT
GTGCCCTGACGAATTTTTCAAGGTGAGAGAACCAGACCACGACGAAGTAT
GAGATTGCGAAACAAGTACATTGTCGCCTTCCTGTTTCCGACAAACCAAC
CAGAAAAAACAGCGGACAGAATCAACATGACAATCAACAACCCCCCCGCT
GTGTCTCCCAACTCATTATCCACATGCGTTATGTGACCTCCACCGTTACT
GGCGCCCCCATCCGTTCTCGATTCCCCCGAGTATGTAGAGACAGATATTC
TTCAGTGGTGAGCATAAGTAGAGACCCTACCTCCATGTCATTCTAACACA
GCACAGAAAAAAGCATTGTTTCACTTTGATGTCGAACACCCACCGTTTAA
TCTTGGCTGTCTTCTTTCCTCGATCCTGCGTAAATGCTCGTATCGGACAG
ACGTTTGAATGCACGTGAAATAATGCACTGATTGTTGTGGTCAAATTCGC
ACTATATGCTACAATTTCGCTTGCCCCCCCTTCCCTATATGCCGCCATTT
TTTCTACGTTCGACTTTTTTGCACAAGTCTGGATATTAGTGAATGACCAA
CATTCGAACGGTGAGAACATTTCGAAGTGAGTTGATGTATGTTGTTGAAG
TAATGCTTTCTTACGTGAATCCTTCTTCAATTCCACCCCTTGCTCCCGCA
TTGTCTCTCGCGTCTCGCTTGGAACAGTGGTCTCAGTGTAAAAAATCGCA
AGAGCGCGGGGAGAATCGTAGCGAATGCCTCGAGTTCAAGGAAGATGCCG
ACCGATGCGGAGTAAAAATGACGCAGCTCATGCTACGAGCAGCACTAGCC
GATGATTGGTACTGAGTAGGATTGCTGTACGAGCGTGTGTGGGATGTTTG
CAGCACTGTATTTCGAGGTGAACAAAAAAACATTCCTTGCGATGTTGTCC
TTTTTTTAATCGATTTGATGTTTCATGTGTTGGCGTATGTGTGATTATTT
CTTGTATGTTAAAGTCATCGGTGGCGTTGTTGGGAAGTCAGTTGATCATA
TATTAATAAAAGAAATGTGAGGCCCGATGATCCAGGTGACGCTGTACATG
AGACAAAAAGCGGAAGAGTAAGTGGTCTTGCATACAAATGTGCGGGAGGG
CTTATCCCTGTCCCTCTACTTTCCCTGCGCTCTCTAGACACTGTTCTTGA
TTGTCAAAATCAATGTGAACACGAGATGCCGCGGCGTGAGTGTGTTGCAC
GACGAGTCACGATGTACACCGTCGCAGTTTACCGGCAGTATTCTGCCAAC
TAACACTGAGCGGTAGTTGTTCTAGGACAGGTACTTCCCGTTTCGAATAT
ATGCACAGCGTAGTCAGCGCCGTGTGTCTAAAACGGTAGGGAAGGCGGAG
AACAAACGTGACACCGGCAAACGTTTCTAGCATATGCTAGGACTCAATTC
AAAACCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4133:7433..10789+

>mRNA_H-paniculata_contig4133.10632.1 ID=mRNA_H-paniculata_contig4133.10632.1|Name=mRNA_H-paniculata_contig4133.10632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig4133:7433..10789+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGCAATGGATGACGGCGGCGTACCTGCAAGCAGTAGCGAGAAGGC
TGCAGCGAGTAGCCAGTCGGCGCATTCTCAGGTCCCAAAACCAACAAAAC
AGAGACAACTCATGGCGGCGGCACCTCCAACCCCTGTAACACGTCGGCCA
GGGCCGCCGCAAGTGTATTCACCGTACTCGCCTGCTACCTTGCAGTTATT
TGATGTCTTAAGGAACGATGGCTTCACGGAGAGGCAGGTGCAGAGCCTCG
CCGAGGATGAACGTCTTGGACCAGTGTACGCGAAGGTCATGATGACCGCA
ATGGATGACGGCGGCGTACCTGCAAGCAGTAGCGAGAAGGCTGCAGCGAG
TAGCCAGTCGGCGCATTCTCAGGTCCCAAAACCAACAAAACAGAGACAAC
TCATGGCGGCGGCACCTCCAACCCCTGTAACACGTCGGCCAGGGCCGCCG
CAAGTGTATTCACCGTACTCGCCTGCTACCTTGCAGTTATTTGATGTCTT
AAGGAACGATGGCTTCACGGAGAGGCAGGTGCAGAGCCTCGCCGAGGATG
AACGTCTTGGACCAGTGTACGCGAAGGTCATGAAACATTGCGAGCCGTTC
TGGACAGCTAAGAACAGCAAAAAGGTGAACAAATACTTGGGGTTCGGCGC
ATGCTCGGCGCGATTCATGTGCCCTGACGAATTTTTCAAGAAACATTGCG
AGCCGTTCTGGACAGCTAAGAACAGCAAAAAGGTGAACAAATACTTGGGG
TTCGGCGCATGCTCGGCGCGATTCATGTGCCCTGACGAATTTTTCAAGTG
GTCTCAGTGTAAAAAATCGCAAGAGCGCGGGGAGAATCGTAGCGAATGCC
TCGAGTTCAAGGAAGATGCCGACCGATGCGGAGTAAAAATGACGCAGCTC
ATGCTACGAGCAGCACTAGCCGATGATTGGTACTGATGGTCTCAGTGTAA
AAAATCGCAAGAGCGCGGGGAGAATCGTAGCGAATGCCTCGAGTTCAAGG
AAGATGCCGACCGATGCGGAGTAAAAATGACGCAGCTCATGCTACGAGCA
GCACTAGCCGATGATTGGTACTGA
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