mRNA_H-paniculata_contig4133.10631.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4133.10631.1 vs. uniprot
Match: D7FHX5_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX5_ECTSI) HSP 1 Score: 245 bits (626), Expect = 1.710e-66 Identity = 250/859 (29.10%), Postives = 362/859 (42.14%), Query Frame = 1
Query: 1 MHVAAGAGAIESIELLLSAGFSAKKRDDRNRTPLHHAAVRFIANGRLECVTFLCITARSTLSSRTQGVGDTPLHLAVRSSNPACVEVILW--NGGALLAYETNLENETPIDIARSLGSENACLRALKNVMNDGRGLRSREESHRTRSSRGRMRLLSGLDDEEEDCRTDFQRIMAVWERFFENAAKACM----SPPNI---------------ENVIISDDDGDAQYADADGTEYARKESQIGNNNDE-----LNLQLNGGLSDQ----DLAKAGMGVFLVRNVNKEGSIGIRGERNDLLGSLANMAEG-----GTPTTCRSAWGLKSSRYCSPRENETVQRIVPKNLAEI-----TACALLQSTDTTLHCPLSNISRS----PAVALIEETDLTYSANQRCETTRSEITGSANQEVTSTLADAHQVSLWVPCWDRESESIYYLHSNTGEITWSSSLFAKCLQPTS------SRVWDPQRGAFFEIEADGGSRWL-DEGSNHQMT--VTEDADAVDPA--------------------------AKGQTNIRRGKKTDLYLGFEDIDNRRRPSTNFIPKPIYPFPAIQGTQEASASKKECDHMFHEALVDEEALMSFPEH-GEEVTLTYQKDDNXXXXXXXXXXXXXITNFFEAREMSGSQVKQATDLFEPTLTRAQPQQR----------------------SEDTRLARQGS---VNGKMSANTNGIQLFDPCAFERADFQAARSFFR---RDAESGVVDNMQKDNAKRDDTSSVQVDMPTSFTGSLPVWMLW------SGSDFNSHSYYVNQETGEVSGILPPEVTASSQGWLRAWSEEHQAYYYANEWSGRATWDL 2235
MH AAG GA+ESIELLLSAG S + RD RTPLHHA + F +G CV+FLC+ A ST+ SR + GDTPLH AVR+ + CVEV+L G + + E N + ETP+D+A +L ++ + AL L H+ RS+ G+ LS L E DFQRIMAVWERFFENAA+A + S P++ E ++ +D+ DG R + + D +L GG + D G + V + R R L +++A GTP G +P ++ ++ ++L + LL S D LH L + R AV L E + T S+ T +A + H W+ CWD SESIYY SN+GE++W++ + ++ S VWDPQR AFF I+ DG S WL D S+ T V E A D A + Q + G + E +R R + N + A G Q + + ++D +A+ P G+E Y KDD + FF+A+E + AT P+ ++A Q E R R + V+ T + P + D + S+ R +D + + ++ D+++ + P LP+W+ W G D N+ Y+VN+ETGE S +LPP+ A S+GWLRAWSEEHQA+++AN+W+G TWDL
Sbjct: 1 MHTAAGVGAVESIELLLSAGLSPRTRDHSGRTPLHHACL-FPGSGAARCVSFLCVVAGSTVLSRDRTAGDTPLHFAVRARHGVCVEVLLSFAEGTSDILREANAKGETPLDLAAALSGDDGIVLAL---------LDGDRRRHQPRSNGGK---LSYLGRNVEGGTVDFQRIMAVWERFFENAARADLGGKKSSPDVISAVGTVGRGGYGGVEQLVNTDETRGVGKLAEDGRWLGRGQPRATQTFDRDRHFVTTSELGGGGVGESQTGDRNGRWDGGWCVDTADSRTFRSRRTWRPSGLADTSSIATAQDLARGTPPQHLERDGEDEHVDVAPLQSPHRRQGAKEDLGVQVGVGESGTTLLSSDDADLH--LFHTPRGGDGVEAVRLPERIHGNIDSTLEPSTPASKDTNAAAEAAADNPYRRH--GAWIACWDAASESIYYWDSNSGELSWNAPAPSTAIERGERLNGFPSPVWDPQREAFFTIDKDGASHWLVDSPSSPTWTTPVVEHRAATDGADGDIASLVVQDYTYDRTSASEESTTFSSWQQGLAIGAAAPEWSSSEVERDRDRDALNNTVNQVDEVLAWDGQQLLAGLP------YSFPMLDRQAVQQLPNTCGDE----YSKDD--------INGNDDLHGFFDAQE------EHATRRSAPSFSQAGAGQECAVEPIDGDARADGRVLHLASGEEQQRCLRANAAAVVSESTQNTTTAGKGNQPDGNDVFDTEEQPSYLRDSHQDTDQNGLGAVEGGTRSHDESAVAEAYDPA--LTRLPLWVQWCSYSPHDGDDTNNQPYFVNEETGESSWVLPPDAVAESRGWLRAWSEEHQAHFFANQWTGNVTWDL 816
BLAST of mRNA_H-paniculata_contig4133.10631.1 vs. uniprot
Match: A0A6H5KHS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS3_9PHAE) HSP 1 Score: 229 bits (585), Expect = 9.510e-61 Identity = 243/849 (28.62%), Postives = 360/849 (42.40%), Query Frame = 1
Query: 1 MHVAAGAGAIESIELLLSAGFSAKKRDDRNRTPLHHAAVRFIANGRLECVTFLCITARSTLSSRTQGVGDTPLHLAVRSSNPACVEVILWNGGAL--LAYETNLENETPIDIARSLGSENACLRALKNVMNDGRGLRSREESHRTRSSRGRMRLLSGLDDEEEDCRTDFQRIMAVWERFFENAAKACM----SPPNIENVIISDDDGD----AQYADADGTEYARKESQ----IGNNNDELNLQLNGGLS---DQDLAKAGMGVFLV--RNVNKEG--------SIGIRGERNDLLGSLANMAEGGTP-----------TTCRSAWGLKSSRYCSPRENETVQRIVPKNLAEITACALLQSTDTTLHCPLSNISRS----PAVALIEETDLTYSANQRCETTRSEITGSANQEVTSTLADAHQVSLWVPCWDRESESIYYLHSNTGEITWSSSLFAKCLQPTS------SRVWDPQRGAFFEIEADGGSRWL---DEGSNHQMTVTEDADAVDPAAKGQTNIRR---------GKKTDLYLGFED----IDNRRRPSTNFIP----KPIYPFPAIQGTQEASASKKECDHMFHEAL--VDEEALMSFPEH-GEEVTLTYQKDDNXXXXXXXXXXXXXITNFFEAREMSGSQVKQATD---------LFEPT------------LTRAQPQQRSEDTRLAR------QGSVNGKMSANTNGIQLFDPCAFERADFQAARSF-FRRDAESGVVDNMQKDNAKRDDTSSVQVDMPTSFTGSLPVWMLWSG-----SDFNSHSYYVNQETGEVSGILPPEVTASSQGWLRAWSEEHQAYYYANEWSGRATWDL 2235
MH AAG GA+ESIELLLSAG S + RD RTPLHHA + F + CV+FLC A ST+ SR + GDTPLH AVR+ CVEV+L + E N ETP+D+A +L ++ L AL E R R R LS L E DFQRIMAVWERFFENAA+A + S P++ + + + G+ Q + D T A K ++ +G L+ +S +L G G RN +G S +R + + ++A G P + R +++ +VQ V ++ LL S D LH L + R AV L E + T + T +A + H W+ CWD SES+YY SN+GE++W++ + ++ + S +WDPQR AFF I+ DG S WL V E A+D A ++ + K++ Y ++ PS++ + + I A Q ++ + +++ F +L VD +++ + P GE+ Y +DD + FF+A+E ++ + EP L QQR A Q + ++GI L D D Q + +D + + ++ D++S V+ D LP+W+ W D + SY+VN+ETGE S +LPP+ A S+GWL AWSEEHQA+++AN+W+G TWDL
Sbjct: 37 MHTAAGVGAVESIELLLSAGLSPRTRDHSGRTPLHHACL-FPGSAAARCVSFLCAVAGSTVLSRDRTAGDTPLHFAVRARQGVCVEVLLSFAAGTNDILREANANGETPLDLAAALSGDDVILLALL------------EADGRRRQPRSNGGNLSYLGRNVEGDTVDFQRIMAVWERFFENAARADLGRKKSSPDVISAVGTVGRGEYGGVEQLVNTDETRAAGKLAKDGRWLGRGQPRATQTLDRDISFVTTSELGGGGGGESQSGDRNGRWDGGWCVDTADSRNLRSRSTSSVATARDLARGPPPQHLERDGEDAHVDVAPLLPVGPMRRQGVKDDLSVQVGVGES-----GTTLLSSDDADLH--LFHTPRGGDGVEAVRLPERIHGNIDSTLEPSTPPIKATNAAAEAAADNPYRRH--GTWIACWDAASESVYYWDSNSGELSWNAPGPSTAIERGNRLNGIPSPLWDPQREAFFTIDEDGASHWLVGYPSSPTWTTPVVEHRAAMDGADGDTASLVQEYNPDRTTVSKESTTYTSWQQGSAVAAAAPEPSSSEVECDRDRGILGTTANQVEEDPAWDRQQPLAGFSHSLRMVDRQSIQTLPNTCGEK----YTEDD--------VNGNDDLHEFFDAQEEHAARCSTPSSSHAGAGQECAVEPIDGDAGADNRVVHLASGPEQQRCLRANAAAVVSEYTQNTTTAGKGNQSDGIDLSD------TDEQPSSGRDSHQDTDQNGLGAVEGGTRFHDESSVVEADDLAMIR--LPLWVQWCSYSPHDDDDTNLSYFVNEETGESSWVLPPDAVAESRGWLLAWSEEHQAHFFANQWTGNVTWDL 843 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4133.10631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4133.10631.1 >prot_H-paniculata_contig4133.10631.1 ID=prot_H-paniculata_contig4133.10631.1|Name=mRNA_H-paniculata_contig4133.10631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=745bp MHVAAGAGAIESIELLLSAGFSAKKRDDRNRTPLHHAAVRFIANGRLECVback to top mRNA from alignment at H-paniculata_contig4133:3033..5886- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4133.10631.1 ID=mRNA_H-paniculata_contig4133.10631.1|Name=mRNA_H-paniculata_contig4133.10631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2854bp|location=Sequence derived from alignment at H-paniculata_contig4133:3033..5886- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4133:3033..5886- >mRNA_H-paniculata_contig4133.10631.1 ID=mRNA_H-paniculata_contig4133.10631.1|Name=mRNA_H-paniculata_contig4133.10631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4470bp|location=Sequence derived from alignment at H-paniculata_contig4133:3033..5886- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |