mRNA_H-paniculata_contig41302.10628.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A8F0F791_9PHAE (Photosystem II protein V n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F791_9PHAE) HSP 1 Score: 306 bits (783), Expect = 5.470e-105 Identity = 149/161 (92.55%), Postives = 155/161 (96.27%), Query Frame = 1
Query: 4 VLRKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
+LRKI IGFLVICFSNIFN S FAIELDEATRTI VNG GKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGL+DY+K PTTYDGLESIAEIHPSIKSANIF+RMRSLDD+DLFDIAGHILIQPKI+SEKWGGGKIYY
Sbjct: 1 MLRKIIIGFLVICFSNIFNPSVFAIELDEATRTIPVNGKGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLVDYMKNPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 161
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A0Y0JAL7_9PHAE (PsbV n=10 Tax=Fucales TaxID=3009 RepID=A0A0Y0JAL7_9PHAE) HSP 1 Score: 267 bits (683), Expect = 9.600e-90 Identity = 127/159 (79.87%), Postives = 143/159 (89.94%), Query Frame = 1
Query: 10 RKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
+K FI F ++ N+ N S AIELDEATRTI V +GKTTVLTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLA+PARNNI+ L+DY+K+PTT+DGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct: 3 KKFFITFTIVSLINLTNLSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKDPTTFDGLESIAEIHPSIKSANIFTRMRSLDENDLIDIAGHILLQPKIVSEKWGGGKIYY 161
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A8F0FAG4_9PHAE (Photosystem II protein V n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAG4_9PHAE) HSP 1 Score: 265 bits (677), Expect = 7.890e-89 Identity = 125/159 (78.62%), Postives = 143/159 (89.94%), Query Frame = 1
Query: 10 RKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
+K FI + C +N S AI+LDEATRTI V +GKTTVLTPEQ+KRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLA+P+RNNI+GL++Y+K+PTTYDGLESIAEIHPSIKSANIFTRMR+LD++DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct: 3 KKFFISLTIACLANSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLATPSRNNINGLVNYMKDPTTYDGLESIAEIHPSIKSANIFTRMRALDEKDLVDIAGHILLQPKILSEKWGGGKIYY 161
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A2I4Q2C0_9PHAE (Cytochrome c-550 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C0_9PHAE) HSP 1 Score: 265 bits (676), Expect = 1.240e-88 Identity = 131/164 (79.88%), Postives = 144/164 (87.80%), Query Frame = 1
Query: 1 MVLRKIFIGFLVICFSNIFNH--SAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
M L+K + ++ C + F + F IELDEATRTI VN GKTTVLT EQLKRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLA+PARNNIDGL+DY+K PTTYDGLESIAEIHPSIKSANIF+RMRSLDD+DLFDIAGHILIQPKI+SEKWGGGKIYY
Sbjct: 1 MSLKKTSLLLIMFCLFSSFISVPNTFGIELDEATRTIKVNKEGKTTVLTAEQLKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNIDGLVDYMKAPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 164
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A1I9LVF9_9PHAE (Cytochrome c-550 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF9_9PHAE) HSP 1 Score: 263 bits (673), Expect = 3.210e-88 Identity = 126/161 (78.26%), Postives = 143/161 (88.82%), Query Frame = 1
Query: 4 VLRKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
+L+K+F ++ N+ + SAFAIELDEATRTI V +GKT VLTPEQ+KRGKRLFNSSCGQCHVGGITKTNPN+GLD EALSLA+P+RNNI GL+DY+K PTTYDGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct: 1 MLKKVFTSLIIASLLNLISCSAFAIELDEATRTIPVTSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNVGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A0R6M468_UNDPI (Cytochrome c-550 n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M468_UNDPI) HSP 1 Score: 262 bits (669), Expect = 1.310e-87 Identity = 124/159 (77.99%), Postives = 139/159 (87.42%), Query Frame = 1
Query: 10 RKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
+K F+ + C + S AI+LDEATRTI V +GKTTVLTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLD EALSLA+PARNNI+GL+DY+K PTTYDGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct: 3 KKFFLSLTIACLATSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDSEALSLATPARNNINGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: D1J771_ECTSI (Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J771_ECTSI) HSP 1 Score: 257 bits (656), Expect = 1.250e-85 Identity = 123/159 (77.36%), Postives = 137/159 (86.16%), Query Frame = 1
Query: 10 RKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
+K F +++ N+ S AIELDEATRTI +GKT VLTPEQ+KRGKRLFNSSCGQCHVGGITKTNPNLGLD EALSLA+P+RNNI GL+DY+K PTTYDGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct: 3 KKFFTSLIIVSLLNLGTSSVLAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKILSEKWGGGKIYY 161
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A8E6D6I5_9PHAE (Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6I5_9PHAE) HSP 1 Score: 253 bits (647), Expect = 3.850e-84 Identity = 123/161 (76.40%), Postives = 143/161 (88.82%), Query Frame = 1
Query: 10 RKIFIGFLVICF--SNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
++I I L+ C S++ +AFAIELDEATRTI+V+ GKTT+LTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLA+PAR+NI GL+DY+K PTTYDGLESIAEIHPSIKSA+IF RMRSL ++DL IAGHIL+QPKI+SEKWGGGKIYY
Sbjct: 9 KRITIRLLMACLLSSSLLVSAAFAIELDEATRTISVDSTGKTTILTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARDNITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEDDLVAIAGHILLQPKIVSEKWGGGKIYY 169
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A6B7EXK3_9PHAE (Photosystem II cytochrome c550 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXK3_9PHAE) HSP 1 Score: 251 bits (641), Expect = 2.670e-83 Identity = 119/140 (85.00%), Postives = 129/140 (92.14%), Query Frame = 1
Query: 67 AFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
A AIELDEATRTI +GKT VLTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLD EALSLA+P+RNNI GL+DY+K PTTYDGLESIAEIHPSIKSANIFTRMRSLD+ DL DIAGHIL+QPKI+SEKWGGGKIYY
Sbjct: 25 ALAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDTEALSLATPSRNNISGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 164
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Match: A0A2U9NNV5_9STRA (Cytochrome c-550 n=1 Tax=Guinardia striata TaxID=1514137 RepID=A0A2U9NNV5_9STRA) HSP 1 Score: 247 bits (631), Expect = 8.610e-82 Identity = 113/158 (71.52%), Postives = 139/158 (87.97%), Query Frame = 1
Query: 13 KIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLIDYIKEPTTYDGLESIAEIHPSIKSANIFTRMRSLDDEDLFDIAGHILIQPKIISEKWGGGKIYY 486
+F FL C N+F +SA AI+LDEATRT+AV+G+G TTVLTPEQ+KRGKRLFN++CG CHVGGITKTNPN+GLDPEALSLA+P R+NI L+DY+K P TYDGL+SIAE+HPSIKSA+I+ RMRS+ D+DL+ IAGHI++QPKI++EKWGGGKIYY
Sbjct: 6 SVFSAFLFFCIFNVFVNSASAIDLDEATRTVAVDGSGNTTVLTPEQVKRGKRLFNATCGACHVGGITKTNPNVGLDPEALSLATPRRDNIAALVDYLKNPVTYDGLDSIAEVHPSIKSADIYPRMRSITDDDLYAIAGHIMLQPKIVTEKWGGGKIYY 163 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41302.10628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig41302.10628.1 >prot_H-paniculata_contig41302.10628.1 ID=prot_H-paniculata_contig41302.10628.1|Name=mRNA_H-paniculata_contig41302.10628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp MVLRKIFIGFLVICFSNIFNHSAFAIELDEATRTIAVNGNGKTTVLTPEQback to top mRNA from alignment at H-paniculata_contig41302:1217..1705- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig41302.10628.1 ID=mRNA_H-paniculata_contig41302.10628.1|Name=mRNA_H-paniculata_contig41302.10628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at H-paniculata_contig41302:1217..1705- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig41302:1217..1705- >mRNA_H-paniculata_contig41302.10628.1 ID=mRNA_H-paniculata_contig41302.10628.1|Name=mRNA_H-paniculata_contig41302.10628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig41302:1217..1705- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |