mRNA_H-paniculata_contig412.10609.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig412.10609.1
Unique NamemRNA_H-paniculata_contig412.10609.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig412.10609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig412contigH-paniculata_contig412:25142..26980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size224
Cds size153
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig412.10609.1prot_H-paniculata_contig412.10609.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig412 25200..26967 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930257.322195-UTR-H-paniculata_contig412:25141..251991622930257.322195-UTR-H-paniculata_contig412:25141..25199Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig412 25142..25199 -
1691481213.2715726-UTR-H-paniculata_contig412:25141..251991691481213.2715726-UTR-H-paniculata_contig412:25141..25199Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig412 25142..25199 -
1622930257.3625224-UTR-H-paniculata_contig412:26967..269801622930257.3625224-UTR-H-paniculata_contig412:26967..26980Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig412 26968..26980 -
1691481213.3005452-UTR-H-paniculata_contig412:26967..269801691481213.3005452-UTR-H-paniculata_contig412:26967..26980Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig412 26968..26980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930257.3340747-CDS-H-paniculata_contig412:25199..253211622930257.3340747-CDS-H-paniculata_contig412:25199..25321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig412 25200..25321 -
1691481213.2824194-CDS-H-paniculata_contig412:25199..253211691481213.2824194-CDS-H-paniculata_contig412:25199..25321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig412 25200..25321 -
1622930257.348192-CDS-H-paniculata_contig412:26936..269671622930257.348192-CDS-H-paniculata_contig412:26936..26967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig412 26937..26967 -
1691481213.2914753-CDS-H-paniculata_contig412:26936..269671691481213.2914753-CDS-H-paniculata_contig412:26936..26967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig412 26937..26967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig412.10609.1

>prot_H-paniculata_contig412.10609.1 ID=prot_H-paniculata_contig412.10609.1|Name=mRNA_H-paniculata_contig412.10609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MGRRYSLQCAGVMSHVMIYRESFTQLPSLLPRCIAMYVNNTGHRRNWNVR
*
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mRNA from alignment at H-paniculata_contig412:25142..26980-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig412.10609.1 ID=mRNA_H-paniculata_contig412.10609.1|Name=mRNA_H-paniculata_contig412.10609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1839bp|location=Sequence derived from alignment at H-paniculata_contig412:25142..26980- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCAGGAAGCCATGGGTCGTCGATATTCTCTGCAATGTGCAGGTGGGA
AAGGACTGATGAAGGCATTGCGGGCCTATTTCGACCGTTAACGTTATTTT
TTGCTTCTTTTTCAGCCGCAGCTTGGTTCTTCATCGTAACCCCCGGCCCG
AAGCTGAGAGTGCAATGCCTCGGTTCTTGCCTTGTACCATTGCCCAGTGG
GGGCAGCAGCTCCACTCGCTCGTCAATTTTGGAGTTGACAGCAGTATACT
CTGACGGGTACTCTTCTTACTTCCGCAGGCATTTTAGCCATGTATTAACA
CATTTTTACAGAAAACAAAATGGGAGGACAAGCGGTAAGCGCCAGAAATT
GAACCCACAACCTGCCGGTTGATGTATGTATTTCAGGAGTGTTCTAGGTA
ATAGTACTGAGGTAAAAATACCCCGGAATTGCGAGGTGTTCCATCTTCGG
TACCAATACAGTGAAAAACTGGTTTCCCGTTTCCCGTTACCGTGCACGGC
ACAGCCAAACATGACTACCGCGGTGTCAGAGCGATTTCCCGTTTACCATA
CTGTGTACGGCACAGCCAAATGTGATTGCCGCGGTGTTAGAGCGATTTAT
CGTTGGCCGTACCGTGAAACCTCGTTACCATACCGATACCATGCCTTCAA
ACTACGACATTTGTAATTCGTTGGAACGGGCTCTCGGAATACATCAGTAC
CCTCGTTGTGGAACTCCCCGTACGCACTGTATACTACACGCACGGGTTTT
ATGGCTGTGTTTTGTATCTTCGGCTTGGACAAGGCTTGGGCACCGAAAAA
CTGTGCCAAATACCAGATACTGTACCATATGATACCTAGAAGACAAATAC
CGTACCTTACCGTACCTTACCTTACCGTACCTTACCTTACCCTATCTTAC
CGTGCCTTACCGCGGGGGAAAAACTTAATACCGCTTACCGCGCAAATACC
GAGAAATCTCCATATACCATACCGTACTCTGCTATCGATATCCCGAATAC
CGTTGACCGACACGATACCGAGGCAATCATTTACCGCACCGTTTATTCAT
TTTTTAAATATCGTTATGGAGATCACGCCTGATTTATTTAACGTTGTATA
ACACCAGGGGTAATCGGTGTTGTTCGTATCTCAGATGTATCGAGAACCTG
CAATAGCCTGCCATTGTCGCATATTGGCGGGTATCGGCGAGACGTTTCCA
ACGACGCAATGTTCGGTGTCAGAAGTCAGTGCCGTCACATTCGAGAAAAT
GGATTTGAAAACATCATCCGCGGGGTGTTGTACAATGTAACGTATACTAC
GGTATCCATGACATGGCTAAGGCTGGATATATGTGACGTTTCCCCGGATA
CCGCGTGGACGGTGAATCATGAATCTGTCGCATATAGAGCTGGGGAGGGG
GGAGCAGGGACTTCGGTATGTAGTGCGTGCTCTCCCATCTCACGTAGTCT
ATTTTTGTCTTCTGTCCCTTCCTCCGCTCTAATTCAAGAGACTAAGGAAG
ATCCGTAGATCGAGATAGTACAGTCGCCTGCCGTTGCTTTATTGGTCCTA
TTTCATCTCTCGTTTTTCCGCCTACCTTTGTTTTTTCCTTTTGTTACCGT
GTTTCCGCACGTCGTTGCCCGATGCGCGCTTCGCTTCATTCGCCCTTGCT
CGCTTGCAGGTGTGATGTCTCATGTTATGATATACAGAGAATCGTTTACC
CAGCTGCCTTCTCTCTTACCCAGATGTATTGCCATGTACGTTAATAATAC
TGGACACAGGAGGAATTGGAATGTACGATGAAGCCAATAAGGAATTGAAA
GAAAAAGAAACGCCTATTCTCGAAGTTACGGATGAGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig412:25142..26980-

>mRNA_H-paniculata_contig412.10609.1 ID=mRNA_H-paniculata_contig412.10609.1|Name=mRNA_H-paniculata_contig412.10609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig412:25142..26980- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCGTCGATATTCTCTGCAATGTGCAGATGGGTCGTCGATATTCTC
TGCAATGTGCAGGTGTGATGTCTCATGTTATGATATACAGAGAATCGTTT
ACCCAGCTGCCTTCTCTCTTACCCAGATGTATTGCCATGTACGTTAATAA
TACTGGACACAGGAGGAATTGGAATGTACGATGAGTGTGATGTCTCATGT
TATGATATACAGAGAATCGTTTACCCAGCTGCCTTCTCTCTTACCCAGAT
GTATTGCCATGTACGTTAATAATACTGGACACAGGAGGAATTGGAATGTA
CGATGA
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