mRNA_H-paniculata_contig4119.10607.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4119.10607.1
Unique NamemRNA_H-paniculata_contig4119.10607.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4119.10607.1 vs. uniprot
Match: A0A6H5K8V0_9PHAE (MutS_I domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V0_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.560e-30
Identity = 57/62 (91.94%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:    1 KVLLTRVGEFYETYGVDAVMMMQHAGLNRMGQEVRAGCPRKNVQQTLDGLTSAGLTVAVYEE 186
            KVLLTRVGEFYETYGVDAVMMMQHAGLN+MGQE+RAGCPR+NVQQT+DGLT AGLTVAVYEE
Sbjct:  493 KVLLTRVGEFYETYGVDAVMMMQHAGLNKMGQEIRAGCPRRNVQQTIDGLTGAGLTVAVYEE 554
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BLAST of mRNA_H-paniculata_contig4119.10607.1 vs. uniprot
Match: W7TDJ9_9STRA (Dna mismatch repair protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDJ9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.570e-24
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 KVLLTRVGEFYETYGVDAVMMMQHAGLNRMGQEVRAGCPRKNVQQTLDGLTSAGLTVAVYEEVGRL 198
            KV+LTRVGEFYETYGVDA+M++++AGLN MG + +AGCP KNVQ TLDGLTSAGLTVAV EE+  L
Sbjct:  325 KVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDL 390
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BLAST of mRNA_H-paniculata_contig4119.10607.1 vs. uniprot
Match: A0A4D9CWC2_9STRA (DNA mismatch repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWC2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.930e-24
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 KVLLTRVGEFYETYGVDAVMMMQHAGLNRMGQEVRAGCPRKNVQQTLDGLTSAGLTVAVYEEVGRL 198
            KV+LTRVGEFYETYGVDA+M++++AGLN MG + +AGCP KNVQ TLDGLTSAGLTVAV EE+  L
Sbjct:  187 KVILTRVGEFYETYGVDAIMLVEYAGLNPMGSKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDL 252
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BLAST of mRNA_H-paniculata_contig4119.10607.1 vs. uniprot
Match: A0A7S2KYZ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KYZ1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.370e-22
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    4 VLLTRVGEFYETYGVDAVMMMQHAGLNRMGQEVRAGCPRKNVQQTLDGLTSAGLTVAVYEE 186
            ++L RVG+FYETYG+DA+M+++H GLN M  + RAGCP +NVQ TLDGLT+AG  VAVYEE
Sbjct:   58 IMLVRVGDFYETYGIDAIMLVEHCGLNPMAGKARAGCPWRNVQATLDGLTNAGFRVAVYEE 118
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BLAST of mRNA_H-paniculata_contig4119.10607.1 vs. uniprot
Match: A0A0G4EAV3_VITBC (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EAV3_VITBC)

HSP 1 Score: 97.4 bits (241), Expect = 7.810e-22
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 KVLLTRVGEFYETYGVDAVMMMQHAGLNRMGQEVRAGCPRKNVQQTLDGLTSAGLTVAVYEEV 189
            KVLL RVGEFYETYG+DA+MM+++AGLN MG + +AGCP +N+Q TLD LT AGLTVAV+EE+
Sbjct:  110 KVLLVRVGEFYETYGIDALMMVEYAGLNPMGSKAKAGCPIRNIQSTLDSLTRAGLTVAVFEEL 172
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BLAST of mRNA_H-paniculata_contig4119.10607.1 vs. uniprot
Match: A0A7S4BGT8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BGT8_CHRCT)

HSP 1 Score: 97.4 bits (241), Expect = 7.810e-22
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 KVLLTRVGEFYETYGVDAVMMMQHAGLNRMGQEVRAGCPRKNVQQTLDGLTSAGLTVAVYEEVG 192
            K+LL RVG+FYETYGVDA+M++++AGLN MG + RAGCP  NVQ TLD LT+AGLTVAVYEE+G
Sbjct:  225 KLLLVRVGDFYETYGVDALMLVEYAGLNPMGGKCRAGCPIANVQPTLDDLTAAGLTVAVYEEMG 288
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BLAST of mRNA_H-paniculata_contig4119.10607.1 vs. uniprot
Match: A0A8J2SVM6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVM6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.060e-21
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 KVLLTRVGEFYETYGVDAVMMMQHAGLNRMGQEVRAGCPRKNVQQTLDGLTSAGLTVAVYEE 186
            KVLL RVGEFYE +GVDA ++++H GLN MG +VRAGCP +N+QQTLDGLT  GLTVAVYEE
Sbjct:   94 KVLLVRVGEFYEAWGVDATLLVEHCGLNPMGDKVRAGCPWRNLQQTLDGLTRNGLTVAVYEE 155
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BLAST of mRNA_H-paniculata_contig4119.10607.1 vs. uniprot
Match: A0A7S3QFU6_9STRA (DNA mismatch repair protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QFU6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.710e-21
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    4 VLLTRVGEFYETYGVDAVMMMQHAGLNRMGQEVRAGCPRKNVQQTLDGLTSAGLTVAVYEE 186
            V+LTRVGEFYE +G+DA+M++QH GLN MG + RAGCP KNVQ TLDGLT  G  VAVYEE
Sbjct:  265 VILTRVGEFYEAFGIDAIMLVQHCGLNPMGSKARAGCPIKNVQATLDGLTETGFRVAVYEE 325
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BLAST of mRNA_H-paniculata_contig4119.10607.1 vs. uniprot
Match: A0A0M0J965_9EUKA (DNA mismatch repair protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J965_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 3.260e-20
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 KVLLTRVGEFYETYGVDAVMMMQHAGLNRMGQEVRAGCPRKNVQQTLDGLTSAGLTVAVYEEV 189
            ++LL RVGEFYE +G DA+M++Q AGLN MG + RAGCP +NVQ TLD LTSAGLTVAVYEEV
Sbjct:   93 QLLLIRVGEFYEAFGFDALMLVQWAGLNPMGSKCRAGCPVQNVQATLDALTSAGLTVAVYEEV 155
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BLAST of mRNA_H-paniculata_contig4119.10607.1 vs. uniprot
Match: A0A7S2UPS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPS2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.490e-20
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    4 VLLTRVGEFYETYGVDAVMMMQHAGLNRMGQEVRAGCPRKNVQQTLDGLTSAGLTVAVYEE 186
            V+LTRVG+FYE +G+DA+++++  GLN MG + RAGCP KNVQQTLD LT+AGL VAV EE
Sbjct:   42 VILTRVGDFYEAFGLDAILLVEFCGLNPMGGKARAGCPVKNVQQTLDCLTTAGLRVAVIEE 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4119.10607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8V0_9PHAE1.560e-3091.94MutS_I domain-containing protein n=1 Tax=Ectocarpu... [more]
W7TDJ9_9STRA1.570e-2474.24Dna mismatch repair protein n=1 Tax=Nannochloropsi... [more]
A0A4D9CWC2_9STRA3.930e-2474.24DNA mismatch repair protein n=2 Tax=Monodopsidacea... [more]
A0A7S2KYZ1_9STRA4.370e-2265.57Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A0G4EAV3_VITBC7.810e-2269.84DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A7S4BGT8_CHRCT7.810e-2271.88Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A8J2SVM6_9STRA1.060e-2172.58Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3QFU6_9STRA3.710e-2170.49DNA mismatch repair protein n=1 Tax=Chaetoceros de... [more]
A0A0M0J965_9EUKA3.260e-2071.43DNA mismatch repair protein n=1 Tax=Chrysochromuli... [more]
A0A7S2UPS2_9STRA3.490e-2065.57Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4119contigH-paniculata_contig4119:14760..14999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue5.9e-17
Seed eggNOG ortholog159749.K0SCL8
Preferred nameMSH6
KEGG koko:K08737
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000217,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0000710,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032135,GO:0032137,GO:0032300,GO:0032301,GO:0032302,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036297,GO:0042623,GO:0043111,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.MutS domain I
EggNOG OGs2XAQ4@2836,COG0249@1,KOG0217@2759
COG Functional cat.L
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930257.2752066-CDS-H-paniculata_contig4119:14759..149991622930257.2752066-CDS-H-paniculata_contig4119:14759..14999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4119 14760..14999 +
1691481213.2504282-CDS-H-paniculata_contig4119:14759..149991691481213.2504282-CDS-H-paniculata_contig4119:14759..14999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4119 14760..14999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4119.10607.1prot_H-paniculata_contig4119.10607.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4119 14760..14999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4119.10607.1

>prot_H-paniculata_contig4119.10607.1 ID=prot_H-paniculata_contig4119.10607.1|Name=mRNA_H-paniculata_contig4119.10607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
KVLLTRVGEFYETYGVDAVMMMQHAGLNRMGQEVRAGCPRKNVQQTLDGL
TSAGLTVAVYEEVGRLLPLPCCPGLRTSTR
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mRNA from alignment at H-paniculata_contig4119:14760..14999+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4119.10607.1 ID=mRNA_H-paniculata_contig4119.10607.1|Name=mRNA_H-paniculata_contig4119.10607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig4119:14760..14999+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTCCTTCTGACGCGGGTCGGGGAGTTCTACGAGACGTATGGCGTGGA
TGCTGTCATGATGATGCAGCACGCTGGGTTGAACAGGATGGGGCAGGAGG
TCAGGGCCGGCTGTCCTCGTAAGAACGTCCAGCAGACGCTTGACGGTCTC
ACAAGCGCCGGTCTTACGGTCGCCGTCTACGAGGAGGTAGGAAGACTTCT
TCCCCTCCCATGCTGCCCGGGGTTGAGAACGTCAACCAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4119:14760..14999+

>mRNA_H-paniculata_contig4119.10607.1 ID=mRNA_H-paniculata_contig4119.10607.1|Name=mRNA_H-paniculata_contig4119.10607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig4119:14760..14999+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTCCTTCTGACGCGGGTCGGGGAGTTCTACGAGACGTATGGCGTGGA
TGCTGTCATGATGATGCAGCACGCTGGGTTGAACAGGATGGGGCAGGAGG
TCAGGGCCGGCTGTCCTCGTAAGAACGTCCAGCAGACGCTTGACGGTCTC
ACAAGCGCCGGTCTTACGGTCGCCGTCTACGAGGAGGTAGGAAGACTTCT
TCCCCTCCCATGCTGCCCGGGGTTGAGAACGTCAACCAGAAAGGTCCTTC
TGACGCGGGTCGGGGAGTTCTACGAGACGTATGGCGTGGATGCTGTCATG
ATGATGCAGCACGCTGGGTTGAACAGGATGGGGCAGGAGGTCAGGGCCGG
CTGTCCTCGTAAGAACGTCCAGCAGACGCTTGACGGTCTCACAAGCGCCG
GTCTTACGGTCGCCGTCTACGAGGAGGTAGGAAGACTTCTTCCCCTCCCA
TGCTGCCCGGGGTTGAGAACGTCAACCAGA
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