prot_H-paniculata_contig41143.10599.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig41143.10599.1
Unique Nameprot_H-paniculata_contig41143.10599.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length107
Homology
BLAST of mRNA_H-paniculata_contig41143.10599.1 vs. uniprot
Match: A0A6H5JSB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB5_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.460e-7
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 0
Query:   24 LVVPGLGRNLFSVKQAARNGVVSIFDMDNPRLEANNFTLPLQEVASDLYSFSLDLTNGSGVPALVMQAAADATLWHRRLGHL 105
            LVVPGLGRN+FS     +NGV  + +  NP L      LPL++ + D+ +   DL           +A  +AT  HRRLG+L
Sbjct:  402 LVVPGLGRNVFSPTAQIKNGVKLVIEDGNPHLAVGGHILPLEQDSRDVVTADDDL-------GFAYEATVNATTLHRRLGYL 476          
BLAST of mRNA_H-paniculata_contig41143.10599.1 vs. uniprot
Match: A0A6H5K611_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K611_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.140e-6
Identity = 37/122 (30.33%), Postives = 53/122 (43.44%), Query Frame = 0
Query:    3 GLLRGNIVDGDGVQRLSQLSCLVVPGLGRNLFSVKQAARNGVVSIFDMDNPRLEANNFTLPLQEVASDLYSFSLDLT-----NGSGVPALVMQ--------------AAADATLWHRRLGHL 105
            G+L   + D  G Q   ++  L+VPGLGRN+FS     + G+  + +   P L   +  +PL +   D    +LD+T       SG  +LV                    A  WHRRLGHL
Sbjct:   62 GILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTVKDKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHL 183          
BLAST of mRNA_H-paniculata_contig41143.10599.1 vs. uniprot
Match: A0A6H5K9M6_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.060e-6
Identity = 37/122 (30.33%), Postives = 52/122 (42.62%), Query Frame = 0
Query:    3 GLLRGNIVDGDGVQRLSQLSCLVVPGLGRNLFSVKQAARNGVVSIFDMDNPRLEANNFTLPLQEVASDLYSFSLDLT-----NGSGVPALVMQ--------------AAADATLWHRRLGHL 105
            G+L   + D  G Q   ++  L+VPGLGRN+FS     + G+  + +   P L      +PL +   D    +LD+T       SG  +LV                    A  WHRRLGHL
Sbjct:   38 GILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLPIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHL 159          
BLAST of mRNA_H-paniculata_contig41143.10599.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.010e-6
Identity = 37/122 (30.33%), Postives = 52/122 (42.62%), Query Frame = 0
Query:    3 GLLRGNIVDGDGVQRLSQLSCLVVPGLGRNLFSVKQAARNGVVSIFDMDNPRLEANNFTLPLQEVASDLYSFSLDLT-----NGSGVPALVMQ--------------AAADATLWHRRLGHL 105
            G+L   + D  G Q   ++  L+VPGLGRN+FS     + G+  + +   P L      +PL +   D    +LD+T       SG  +LV                    A  WHRRLGHL
Sbjct:  255 GILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHL 376          
BLAST of mRNA_H-paniculata_contig41143.10599.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.070e-6
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 0
Query:    3 GLLRGNIVDGDGVQRLSQLSCLVVPGLGRNLFSVKQAARNGVVSIFDMDNPRLEANNFTLPLQEVASDLYSFSLDL 78
            GL+   + D +G ++   L  LVVPGLGRN+FS     +NGV  + +  NP L     TLPL++   D+   S+D+
Sbjct:  185 GLIHCTVKDSNGEKKAVLLRGLVVPGLGRNVFSRAAQIKNGVKLVIEEGNPHLAVGGHTLPLKQDPLDMGMCSVDI 260          
BLAST of mRNA_H-paniculata_contig41143.10599.1 vs. uniprot
Match: A0A6H5JWA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA3_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.040e-5
Identity = 36/124 (29.03%), Postives = 51/124 (41.13%), Query Frame = 0
Query:    1 GRGLLRGNIVDGDGVQRLSQLSCLVVPGLGRNLFSVKQAARNGVVSIFDMDNPRLEANNFTLPLQEVASDLYSFSLDLT-----NGSGVPALVMQ--------------AAADATLWHRRLGHL 105
            GRG         +  ++  +   L+VPGLGRN+FS     + G+  + +   PRL      +PL +   D    +LD+T       SG  +LV                    A  WHRRLGHL
Sbjct:  211 GRGFAMAXTSKEESARKTPRTQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPRLTIQGNVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHL 334          
BLAST of mRNA_H-paniculata_contig41143.10599.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 6.880e-5
Identity = 26/68 (38.24%), Postives = 38/68 (55.88%), Query Frame = 0
Query:    3 GLLRGNIVDGDGVQRLSQLSCLVVPGLGRNLFSVKQAARNGVVSIFDMDNPRLEANNFTLPLQEVASD 70
            GL+   + D +G ++   L  +VVPGLGRN+FS     +NGV  + +  NP L     TLPL++   D
Sbjct:  443 GLIHCTVKDSNGEKQAVLLRGIVVPGLGRNVFSSTAQIKNGVKLVIEEGNPHLAVGGHTLPLKQDPRD 510          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41143.10599.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JSB5_9PHAE3.460e-739.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K611_9PHAE1.140e-630.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9M6_9PHAE2.060e-630.33gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5KVF6_9PHAE3.010e-630.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYD3_9PHAE3.070e-638.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWA3_9PHAE1.040e-529.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW66_9PHAE6.880e-538.24CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41143contigH-paniculata_contig41143:571..891 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41143.10599.1mRNA_H-paniculata_contig41143.10599.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig41143 571..891 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig41143.10599.1 ID=prot_H-paniculata_contig41143.10599.1|Name=mRNA_H-paniculata_contig41143.10599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
GRGLLRGNIVDGDGVQRLSQLSCLVVPGLGRNLFSVKQAARNGVVSIFDM
DNPRLEANNFTLPLQEVASDLYSFSLDLTNGSGVPALVMQAAADATLWHR
RLGHLFH
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