mRNA_H-paniculata_contig41129.10595.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41129.10595.1
Unique NamemRNA_H-paniculata_contig41129.10595.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41129.10595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41129contigH-paniculata_contig41129:1017..1171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size155
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930255.8947349-CDS-H-paniculata_contig41129:1016..11661622930255.8947349-CDS-H-paniculata_contig41129:1016..1166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41129 1017..1166 +
1691481212.7272537-CDS-H-paniculata_contig41129:1016..11661691481212.7272537-CDS-H-paniculata_contig41129:1016..1166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41129 1017..1166 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930255.9543664-UTR-H-paniculata_contig41129:1166..11711622930255.9543664-UTR-H-paniculata_contig41129:1166..1171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41129 1167..1171 +
1691481212.7388093-UTR-H-paniculata_contig41129:1166..11711691481212.7388093-UTR-H-paniculata_contig41129:1166..1171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41129 1167..1171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41129.10595.1prot_H-paniculata_contig41129.10595.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41129 1017..1166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41129.10595.1

>prot_H-paniculata_contig41129.10595.1 ID=prot_H-paniculata_contig41129.10595.1|Name=mRNA_H-paniculata_contig41129.10595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
MCPGVVELHSFPVGRDPASEVTPRQELLDNLWVAEHVALPLCEAIDDCV*
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mRNA from alignment at H-paniculata_contig41129:1017..1171+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41129.10595.1 ID=mRNA_H-paniculata_contig41129.10595.1|Name=mRNA_H-paniculata_contig41129.10595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=155bp|location=Sequence derived from alignment at H-paniculata_contig41129:1017..1171+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCCTGGAGTCGTGGAACTCCACTCTTTCCCCGTGGGGCGAGATCC
CGCGAGCGAGGTGACGCCAAGACAGGAGTTGCTGGATAACCTGTGGGTGG
CGGAACATGTGGCCTTGCCCTTGTGTGAGGCGATCGATGACTGCGTATAG
AGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig41129:1017..1171+

>mRNA_H-paniculata_contig41129.10595.1 ID=mRNA_H-paniculata_contig41129.10595.1|Name=mRNA_H-paniculata_contig41129.10595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig41129:1017..1171+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCCTGGAGTCGTGGAACTCCACTCTTTCCCCGTGGGGCGAGATCC
CGCGAGCGAGGTGACGCCAAGACAGGAGTTGCTGGATAACCTGTGGGTGG
CGGAACATGTGGCCTTGCCCTTGTGTGAGGCGATCGATGACTGCGTATAG
ATGTGTCCTGGAGTCGTGGAACTCCACTCTTTCCCCGTGGGGCGAGATCC
CGCGAGCGAGGTGACGCCAAGACAGGAGTTGCTGGATAACCTGTGGGTGG
CGGAACATGTGGCCTTGCCCTTGTGTGAGGCGATCGATGACTGCGTATAG
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