mRNA_H-paniculata_contig41075.10581.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41075.10581.1
Unique NamemRNA_H-paniculata_contig41075.10581.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41075.10581.1 vs. uniprot
Match: A0A2A4JC36_HELVI (Uncharacterized protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4JC36_HELVI)

HSP 1 Score: 65.5 bits (158), Expect = 1.940e-9
Identity = 43/154 (27.92%), Postives = 68/154 (44.16%), Query Frame = 1
Query:    1 AWTALGEKYLNSSMQRRRLLMRQLDSKVMAPIQDPDEYLTEIFHLRDELEYIGETFSEGRITDIILEGLPDDYDQIKFAAESDPDFSLKDMETTMRNMYANRIARGQISSLRRKGRESAMMASSSAFKGICNYCHKPGHIKSECRKPKRRQRSS 462
            AW AL   + +  + RR LL+RQL           +EY+  +  L  +L  IG    +  + +I+L GLP +YD +  + ES         E     +      R    +   KG     M S      +C+YC + GH+K++C K KR + +S
Sbjct:   85 AWDALKSVFEDKGLYRRVLLLRQLHRANYTHYNSMNEYIEGVMTLVQQLADIGRVIEDKEVAEILLSGLPQEYDVLVSSLESLSSLEALTSEMVRARLLQEHFRRVNNGNNENKGDNMGFMTSKRNV--VCSYCKRTGHVKAKCSKLKREKAAS 236          
BLAST of mRNA_H-paniculata_contig41075.10581.1 vs. uniprot
Match: UPI00200C375B (uncharacterized protein LOC125235761 n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200C375B)

HSP 1 Score: 63.2 bits (152), Expect = 7.070e-9
Identity = 42/154 (27.27%), Postives = 75/154 (48.70%), Query Frame = 1
Query:    1 AWTALGEKYLNSSMQRRRLLMRQLDSKVMAPIQDPDEYLTEIFHLRDELEYIGETFSEGRITDIILEGLPDDYDQIKFAAESDPDFSLKDMETTMRNMYANRIARGQISSLRRKGRESAMMASSSAFKGICNYCHKPGHIKSECRKPKRRQRSS 462
            AW+ L + + +  + RR +L+RQL            +Y+  +  L  +L+ IG T  +  + +++L GLP +YD +  + E+         E     +      R  I S +     +A+   +++ K IC+YC KP H KS+C K KR +++S
Sbjct:   84 AWSNLQQIFEDKGLYRRVVLLRQLHRASYTDYSSMQQYIEAVTTLVQKLDDIGRTTEDAEVAELLLSGLPQEYDVLVSSLEAASLTKTLTSEMVRARLLQEEFRRTTIDSDKAN---AALFTKTTSKKIICSYCKKPNHHKSKCFKFKRDKKNS 234          
BLAST of mRNA_H-paniculata_contig41075.10581.1 vs. uniprot
Match: A0A0L7LKF6_9NEOP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7LKF6_9NEOP)

HSP 1 Score: 63.5 bits (153), Expect = 9.760e-9
Identity = 44/160 (27.50%), Postives = 81/160 (50.62%), Query Frame = 1
Query:    1 AWTALGEKYLNSSMQRRRLLMRQLDSKVMAPIQDPDEYLTEIFHLRDELEYIGETFSEGRITDIILEGLPDDYDQIKFAAESDPDFSLKDMETTMRNMYANRIARGQISSLRRKGRESAMMASSSAFKG-------ICNYCHKPGHIKSECRKPKRRQRS 459
            AW+ L + + ++ + RR LL+RQL    +       +Y+  +  L  +L  IG+   +G I +++L GLP DYD +  + E+            +    ++ + R ++  L+ + R+S   A+S+AF          C YC K GH+K++C K +R ++S
Sbjct:  102 AWSNLAKVFEDTGLYRRVLLLRQLHRIELTTYSSVTQYVESVMTLVQQLADIGKHIEDGEIAELLLSGLPTDYDHLVSSLET----------ICLTGSLSSELVRTRL--LQEEFRKSEPGATSTAFVSRQTKESKTCTYCKKKGHLKNKCFKLRRDKKS 249          
BLAST of mRNA_H-paniculata_contig41075.10581.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.050e-8
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 1
Query:    4 WTALGEKYLNSSMQRRRLLMRQLDSKVMAPIQDPDEYLTEIFHLRDELEYIGETFSEGRITDIILEGLPDDYDQIKFAA 240
            W  L  K+  +   RRR L R+L+S  M    DPD ++T ++HL ++L +IG T ++ ++ DIIL+GLP +Y  I  A+
Sbjct:  236 WKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLISGAS 314          
BLAST of mRNA_H-paniculata_contig41075.10581.1 vs. uniprot
Match: A0A0N1I711_PAPMA (Copia protein n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A0N1I711_PAPMA)

HSP 1 Score: 61.6 bits (148), Expect = 3.690e-8
Identity = 41/158 (25.95%), Postives = 77/158 (48.73%), Query Frame = 1
Query:    1 AWTALGEKYLNSSMQRRRLLMRQLDSKVMAPIQDPDEYLTEIFHLRDELEYIGETFSEGRITDIILEGLPDDYDQIKFAAESDPDFSLKDMETTMRNMYANRIARGQISSLRRKGRESAMMASSSAF---KGICNYCHKPGHIKSECRKPKRRQRSSA 465
            AW  L + + +  + RR LL+RQL         +  EY+  +  L  +L  IG +  +G + +I+L GLP +YD +    E+    +     +    +   R+ + +   +R+ G E      ++ F   K IC++C K GH+++ C K K++++  A
Sbjct:   96 AWNNLAKVFEDRGLYRRVLLLRQLHHIEYKNYSNMQEYINTVMTLVSQLADIGRSIEDGEVAEILLSGLPSEYDVLVSNLET----ACISTTSLSSELVRTRLLQEE---MRKNGNEHTSSTDNAYFAKKKVICSFCGKSGHVRNRCFKLKKQKKDKA 246          
BLAST of mRNA_H-paniculata_contig41075.10581.1 vs. uniprot
Match: A0A8J9Y743_9NEOP ((lesser marbled fritillary) hypothetical protein n=2 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9Y743_9NEOP)

HSP 1 Score: 61.2 bits (147), Expect = 6.390e-8
Identity = 42/155 (27.10%), Postives = 76/155 (49.03%), Query Frame = 1
Query:    1 AWTALGEKYLNSSMQRRRLLMRQLDSKVMAPIQDPDEYLTEIFHLRDELEYIGETFSEGRITDIILEGLPDDYDQIKFAAESDPDFSLKDMET-TMRNMYANRIARGQI--SSLRRKGRESAMMASS---SAFKGICNYCHKPGHIKSECRKPKR 447
            AW +L + + +  + RR LL+R+L         D  +Y+   F++  +L  IG    +  I +++L GLP +YD +           + ++ T T+    ++ + R ++    LRR    S  ++ +   S  K  C+YCHK  H+K++C K KR
Sbjct:   98 AWDSLSDIFEDKGLLRRVLLLRELHRTRYTDFNDMSKYIDNTFNIVQQLADIGRKIEDEEIAELLLSGLPQEYDSL-----------VSNLSTFTLTTRISSEVVRTRLLQEDLRRNNSNSHNISEAAYISKRKVKCDYCHKENHVKAKCFKLKR 241          
BLAST of mRNA_H-paniculata_contig41075.10581.1 vs. uniprot
Match: A0A0L7L4R6_9NEOP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7L4R6_9NEOP)

HSP 1 Score: 59.3 bits (142), Expect = 2.780e-7
Identity = 51/171 (29.82%), Postives = 82/171 (47.95%), Query Frame = 1
Query:    1 AWTALGEKYLNSSMQRRRLLMRQLDSKVMAPIQDPDEYLTEIFHLRDELEYIGETFSEGRITDIILEGLPDDYDQIKFAAESDPDFSLKDMETTMRNMYANRIARGQISSLRRKGRESAM--MASSSAFKG---ICNYCHKPGHIKSECRKPKR--RQRSSAPPSAITASP 492
            AW  L   Y +  + RR  L+RQL     A   +   Y+  +F L  +L  IG+   +  I +I+L GLP ++D +  A E+    S    E     +      +   ++  R G  S++    ++++FK    I +YC K GHIKS+C K KR  +Q ++     +TASP
Sbjct:   96 AWNKLSTVYEDKGLFRRVSLLRQLHRVEFAAFTNMTAYIDYVFTLVQQLANIGKLVEDAEIAEILLSGLPQEFDTLVSALETASITSGLSSELVRARLLQEEYRK---TNTERNGTGSSLNNAFAANSFKNKKIIRHYCKKQGHIKSKCFKWKRLKKQENAKEEQTMTASP 263          
BLAST of mRNA_H-paniculata_contig41075.10581.1 vs. uniprot
Match: A0A0L7KZB7_9NEOP (Uncharacterized protein n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7KZB7_9NEOP)

HSP 1 Score: 58.5 bits (140), Expect = 5.110e-7
Identity = 40/150 (26.67%), Postives = 74/150 (49.33%), Query Frame = 1
Query:    1 AWTALGEKYLNSSMQRRRLLMRQLDSKVMAPIQDPDEYLTEIFHLRDELEYIGETFSEGRITDIILEGLPDDYDQIKFAAESDPDFSLKDMETTMRNMYANRIARGQISSLRRKGRESAMMASSSAFKG-------ICNYCHKPGHIKSE 429
            AW+ L + + ++ + RR LL+RQL    +       +Y+  +  L  +L  IG+   +G I +++L GLP DYD +  + E+            +    ++ + R ++  L+ + R+S   A+S+AF          C YC K GH+K++
Sbjct:  102 AWSNLAKVFEDTGLYRRVLLLRQLHRIELTTYSSVTQYVESVMTLVQQLADIGKHIEDGEIAELLLSGLPTDYDHLVSSLET----------ICLTGSLSSELVRTRL--LQEEFRKSEPGATSTAFVSRQTKESKTCTYCKKKGHLKNK 239          
BLAST of mRNA_H-paniculata_contig41075.10581.1 vs. uniprot
Match: UPI002010774D (uncharacterized protein LOC125228091 n=2 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI002010774D)

HSP 1 Score: 54.7 bits (130), Expect = 1.040e-5
Identity = 39/157 (24.84%), Postives = 73/157 (46.50%), Query Frame = 1
Query:    1 AWTALGEKYLNSSMQRRRLLMRQLDSKVMAPIQDPDEYLTEIFHLRDELEYIGETFSEGRITDIILEGLPDDYDQIKFAAESDPDFSLKDMETTMRNMYANRIARGQISSLRRKGRESAMMASSSAFKGICNYCHKPGHIKSECRKPKRRQRSSAPP 471
            AW+ L + + +  + RR LL+R+L     +       Y+  I  +  +LE IG T  +  + +I+L GLP +YD +  +  +         +T    +  +R+    +    RK    +  A  +  +  C++C + GH K+ C K K ++R S+ P
Sbjct:   86 AWSKLKDAFEDKGLYRRVLLLRKLHRIQFSEHSSMASYIDSIITIVQQLEDIGRTIEDAEVAEILLSGLPAEYDTVVSSLST-----AAVGQTVKSEVIKSRL----LQEFSRKSSIESTAAFVTKKQVTCDFCKRQGHTKARCFKLKSKKRKSSNP 233          
BLAST of mRNA_H-paniculata_contig41075.10581.1 vs. uniprot
Match: UPI001E2730A9 (uncharacterized protein LOC123661222 n=1 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E2730A9)

HSP 1 Score: 54.3 bits (129), Expect = 1.510e-5
Identity = 39/152 (25.66%), Postives = 67/152 (44.08%), Query Frame = 1
Query:    1 AWTALGEKYLNSSMQRRRLLMRQLDSKVMAPIQDPDEYLTEIFHLRDELEYIGETFSEGRITDIILEGLPDDYDQIKFAAESDPDFSLKDMETTMRNMYANRIARGQIS---SLRRKGRESAMMASSSAFKGICNYCHKPGHIKSECRKPKR 447
            AW  L E + + S+ RR LL+R+L           + Y+ ++  L  +L  IG    +  I +I+L GLP  YD +     +           T+ N   + + + ++    S +    ++A+  +  A    C +C K  H KS+C K KR
Sbjct:   85 AWNNLSEVFEDRSLYRRVLLLRKLHRVDFTVYSSMNAYIEDVTTLVQQLHDIGRIVEDAEIAEILLSGLPSQYDTLVSGLST----------ATVTNQVTSELVKARLLQEYSRKTSLEDTAVFVTKKAAPLFCEFCKKKNHRKSQCFKLKR 226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41075.10581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A2A4JC36_HELVI1.940e-927.92Uncharacterized protein n=1 Tax=Heliothis virescen... [more]
UPI00200C375B7.070e-927.27uncharacterized protein LOC125235761 n=1 Tax=Legum... [more]
A0A0L7LKF6_9NEOP9.760e-927.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KY84_9PHAE2.050e-839.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A0N1I711_PAPMA3.690e-825.95Copia protein n=1 Tax=Papilio machaon TaxID=76193 ... [more]
A0A8J9Y743_9NEOP6.390e-827.10(lesser marbled fritillary) hypothetical protein n... [more]
A0A0L7L4R6_9NEOP2.780e-729.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A0L7KZB7_9NEOP5.110e-726.67Uncharacterized protein n=1 Tax=Operophtera brumat... [more]
UPI002010774D1.040e-524.84uncharacterized protein LOC125228091 n=2 Tax=Legum... [more]
UPI001E2730A91.510e-525.66uncharacterized protein LOC123661222 n=1 Tax=Melit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41075contigH-paniculata_contig41075:430..921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930254.3935502-CDS-H-paniculata_contig41075:429..9211622930254.3935502-CDS-H-paniculata_contig41075:429..921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41075 430..921 +
1691481212.1378582-CDS-H-paniculata_contig41075:429..9211691481212.1378582-CDS-H-paniculata_contig41075:429..921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41075 430..921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41075.10581.1prot_H-paniculata_contig41075.10581.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41075 430..921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41075.10581.1

>prot_H-paniculata_contig41075.10581.1 ID=prot_H-paniculata_contig41075.10581.1|Name=mRNA_H-paniculata_contig41075.10581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
AWTALGEKYLNSSMQRRRLLMRQLDSKVMAPIQDPDEYLTEIFHLRDELE
YIGETFSEGRITDIILEGLPDDYDQIKFAAESDPDFSLKDMETTMRNMYA
NRIARGQISSLRRKGRESAMMASSSAFKGICNYCHKPGHIKSECRKPKRR
QRSSAPPSAITASP
back to top

mRNA from alignment at H-paniculata_contig41075:430..921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41075.10581.1 ID=mRNA_H-paniculata_contig41075.10581.1|Name=mRNA_H-paniculata_contig41075.10581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=492bp|location=Sequence derived from alignment at H-paniculata_contig41075:430..921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTGGACAGCATTGGGCGAGAAATATCTGAACTCGTCCATGCAGCGCCG CCGTCTACTTATGCGCCAGCTAGACAGCAAGGTCATGGCGCCTATTCAAG ACCCTGATGAGTACCTGACCGAGATATTCCATCTGCGCGACGAGCTCGAG TACATCGGGGAAACTTTCTCGGAAGGGCGCATCACGGATATCATTCTTGA AGGGCTCCCAGACGATTACGACCAGATCAAATTCGCCGCCGAGAGTGACC CCGATTTTTCCCTGAAAGACATGGAAACCACGATGAGAAATATGTACGCC AACCGCATTGCGCGTGGTCAAATCTCATCCTTACGCAGGAAGGGTCGTGA GTCAGCCATGATGGCCTCGTCGTCGGCTTTCAAGGGCATCTGTAATTACT GCCACAAACCTGGACATATCAAGAGCGAGTGTAGAAAGCCGAAGCGGCGG CAAAGGTCTTCAGCACCTCCATCCGCTATCACTGCATCACCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig41075:430..921+

>mRNA_H-paniculata_contig41075.10581.1 ID=mRNA_H-paniculata_contig41075.10581.1|Name=mRNA_H-paniculata_contig41075.10581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig41075:430..921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTGGACAGCATTGGGCGAGAAATATCTGAACTCGTCCATGCAGCGCCG
CCGTCTACTTATGCGCCAGCTAGACAGCAAGGTCATGGCGCCTATTCAAG
ACCCTGATGAGTACCTGACCGAGATATTCCATCTGCGCGACGAGCTCGAG
TACATCGGGGAAACTTTCTCGGAAGGGCGCATCACGGATATCATTCTTGA
AGGGCTCCCAGACGATTACGACCAGATCAAATTCGCCGCCGAGAGTGACC
CCGATTTTTCCCTGAAAGACATGGAAACCACGATGAGAAATATGTACGCC
AACCGCATTGCGCGTGGTCAAATCTCATCCTTACGCAGGAAGGGTCGTGA
GTCAGCCATGATGGCCTCGTCGTCGGCTTTCAAGGGCATCTGTAATTACT
GCCACAAACCTGGACATATCAAGAGCGAGTGTAGAAAGCCGAAGCGGCGG
CAAAGGTCTTCAGCACCTCCATCCGCTATCACTGCATCACCTGCCTGGAC
AGCATTGGGCGAGAAATATCTGAACTCGTCCATGCAGCGCCGCCGTCTAC
TTATGCGCCAGCTAGACAGCAAGGTCATGGCGCCTATTCAAGACCCTGAT
GAGTACCTGACCGAGATATTCCATCTGCGCGACGAGCTCGAGTACATCGG
GGAAACTTTCTCGGAAGGGCGCATCACGGATATCATTCTTGAAGGGCTCC
CAGACGATTACGACCAGATCAAATTCGCCGCCGAGAGTGACCCCGATTTT
TCCCTGAAAGACATGGAAACCACGATGAGAAATATGTACGCCAACCGCAT
TGCGCGTGGTCAAATCTCATCCTTACGCAGGAAGGGTCGTGAGTCAGCCA
TGATGGCCTCGTCGTCGGCTTTCAAGGGCATCTGTAATTACTGCCACAAA
CCTGGACATATCAAGAGCGAGTGTAGAAAGCCGAAGCGGCGGCAAAGGTC
TTCAGCACCTCCATCCGCTATCACTGCATCACCT
back to top