mRNA_H-paniculata_contig41037.10576.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41037.10576.1
Unique NamemRNA_H-paniculata_contig41037.10576.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig41037.10576.1 vs. uniprot
Match: A0A6H5J9G7_9PHAE (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9G7_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.430e-28
Identity = 60/77 (77.92%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:    1 VSDSLVNYETVKYFNNEAHEASRYDDSLRGFQKASLKTQTSLSALNFGQSAIFSVGLTGIMALAASDIGESTRLSLG 231
            V+DSLVNYETVKYFNNEAHEASRYD+SL+GFQ+AS+KTQTSLS LN GQ  IFS GLT IMALAASDIGE+     G
Sbjct:  411 VTDSLVNYETVKYFNNEAHEASRYDESLKGFQEASVKTQTSLSMLNVGQHVIFSTGLTAIMALAASDIGETRGRKAG 487
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BLAST of mRNA_H-paniculata_contig41037.10576.1 vs. uniprot
Match: D8LUA8_ECTSI (Iron-sulfur clusters transporter atm1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 9.250e-27
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:    1 VSDSLVNYETVKYFNNEAHEASRYDDSLRGFQKASLKTQTSLSALNFGQSAIFSVGLTGIMALAASDI--GEST 216
            V+DSLVNYETVKYFNNEAHEASRYD+SL+GFQ+AS+KTQTSLS LN GQ  IFS GLT IMALAASDI  G ST
Sbjct:  303 VTDSLVNYETVKYFNNEAHEASRYDESLKGFQEASVKTQTSLSMLNVGQHVIFSTGLTAIMALAASDIAAGHST 376
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BLAST of mRNA_H-paniculata_contig41037.10576.1 vs. uniprot
Match: A0A836CGR1_9STRA (Iron-sulfur clusters transporter atm1, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGR1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.340e-24
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 VSDSLVNYETVKYFNNEAHEASRYDDSLRGFQKASLKTQTSLSALNFGQSAIFSVGLTGIMALAASDIGEST 216
            V+DSLVNYETVK+FNNE HEA+RYD SL G+Q A+LKT TSLS LNFGQ+AIFSVGLT +MALAA DI   T
Sbjct:  312 VTDSLVNYETVKFFNNEEHEANRYDKSLEGYQHAALKTGTSLSLLNFGQNAIFSVGLTAVMALAARDIAAGT 383
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BLAST of mRNA_H-paniculata_contig41037.10576.1 vs. uniprot
Match: A0A2D4C2C6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2C6_PYTIN)

HSP 1 Score: 101 bits (251), Expect = 2.980e-23
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 VSDSLVNYETVKYFNNEAHEASRYDDSLRGFQKASLKTQTSLSALNFGQSAIFSVGLTGIMALAASDIGEST 216
            V DSL+NYETVKYFNNE HEA+RYD+SL+G+QKA+LKTQTSLS LN GQ+ IFSVGLT IM +A+  I + T
Sbjct:  292 VIDSLMNYETVKYFNNENHEANRYDESLKGYQKAALKTQTSLSLLNAGQNGIFSVGLTAIMYMASQGIADGT 363
[Close]
BLAST of mRNA_H-paniculata_contig41037.10576.1 vs. uniprot
Match: A0A8K1FKS1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKS1_PYTOL)

HSP 1 Score: 101 bits (251), Expect = 3.010e-23
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 VSDSLVNYETVKYFNNEAHEASRYDDSLRGFQKASLKTQTSLSALNFGQSAIFSVGLTGIMALAASDI 204
            V DSL+NYETVKYFNNE HEASRYD+SL G+QKA+LKTQTSLS LN GQ+ IFSVGLT IM +A+ DI
Sbjct:  306 VIDSLMNYETVKYFNNEGHEASRYDESLLGYQKAALKTQTSLSLLNAGQNGIFSVGLTAIMYMASQDI 373
[Close]
BLAST of mRNA_H-paniculata_contig41037.10576.1 vs. uniprot
Match: A0A0G4IX72_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IX72_PLABS)

HSP 1 Score: 99.8 bits (247), Expect = 1.030e-22
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    7 DSLVNYETVKYFNNEAHEASRYDDSLRGFQKASLKTQTSLSALNFGQSAIFSVGLTGIMALAASDIGESTRLSLG 231
            DSL+NYETVK+FNNE  E  RYD+SL G+QKA+LKT TSLS LNFGQ AIFS+G+TG+M LAA DIG  + L+LG
Sbjct:  265 DSLINYETVKFFNNEDLECKRYDESLAGYQKAALKTSTSLSLLNFGQGAIFSLGMTGMMVLAAYDIGRGS-LTLG 338
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BLAST of mRNA_H-paniculata_contig41037.10576.1 vs. uniprot
Match: F0WN44_9STRA (ATPbinding Cassette (ABC) Superfamily putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WN44_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.950e-22
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 VSDSLVNYETVKYFNNEAHEASRYDDSLRGFQKASLKTQTSLSALNFGQSAIFSVGLTGIMALAASDIGEST 216
            V DSL+NYETVKYFNNE HEA +YD SL+G+QKA+LKTQTSLS LN GQ+ IFS+GLT IM +A  DI E T
Sbjct:  301 VIDSLMNYETVKYFNNEMHEAKQYDVSLQGYQKAALKTQTSLSLLNAGQNGIFSIGLTAIMYMATRDIMEGT 372
[Close]
BLAST of mRNA_H-paniculata_contig41037.10576.1 vs. uniprot
Match: L1K173_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K173_GUITC)

HSP 1 Score: 98.6 bits (244), Expect = 2.610e-22
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    7 DSLVNYETVKYFNNEAHEASRYDDSLRGFQKASLKTQTSLSALNFGQSAIFSVGLTGIMALAASDIGEST 216
            DSL+N+ETVKYFNNEAHE  RYDDSLR F+KAS++TQTSLS LNFGQSAIFSVGLT +M ++A  +   T
Sbjct:  248 DSLINFETVKYFNNEAHELRRYDDSLRWFEKASVETQTSLSWLNFGQSAIFSVGLTAMMVVSAQGVLAGT 317
[Close]
BLAST of mRNA_H-paniculata_contig41037.10576.1 vs. uniprot
Match: K3X9V5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X9V5_GLOUD)

HSP 1 Score: 98.6 bits (244), Expect = 2.660e-22
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 VSDSLVNYETVKYFNNEAHEASRYDDSLRGFQKASLKTQTSLSALNFGQSAIFSVGLTGIMALAASDI 204
            V DSL+NYETVKYFNNE HEA RYD+SL+G+Q+A+LKTQTSLS LN GQ+ IFS+GLT IM +A  DI
Sbjct:  295 VIDSLMNYETVKYFNNEKHEADRYDESLKGYQQAALKTQTSLSLLNAGQNGIFSIGLTAIMYMATQDI 362
[Close]
BLAST of mRNA_H-paniculata_contig41037.10576.1 vs. uniprot
Match: W2QZ41_PHYPN (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2QZ41_PHYPN)

HSP 1 Score: 98.2 bits (243), Expect = 3.640e-22
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    1 VSDSLVNYETVKYFNNEAHEASRYDDSLRGFQKASLKTQTSLSALNFGQSAIFSVGLTGIMALAASDIGESTRLSLG 231
            V DSL+NYETVKYFNNE HE  RYD+SL+G+QKA+LKTQTSL+ LN GQ+ IFSVGLT IM +A   I   T LS+G
Sbjct:  303 VIDSLMNYETVKYFNNEEHETERYDESLKGYQKAALKTQTSLAMLNAGQNGIFSVGLTAIMYMACEGIAAGT-LSVG 378
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41037.10576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9G7_9PHAE1.430e-2877.92ABC transmembrane type-1 domain-containing protein... [more]
D8LUA8_ECTSI9.250e-2781.08Iron-sulfur clusters transporter atm1, mitochondri... [more]
A0A836CGR1_9STRA1.340e-2475.00Iron-sulfur clusters transporter atm1, mitochondri... [more]
A0A2D4C2C6_PYTIN2.980e-2370.83Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1FKS1_PYTOL3.010e-2376.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0G4IX72_PLABS1.030e-2269.33Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
F0WN44_9STRA1.950e-2270.83ATPbinding Cassette (ABC) Superfamily putative n=1... [more]
L1K173_GUITC2.610e-2271.43Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
K3X9V5_GLOUD2.660e-2272.06Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W2QZ41_PHYPN3.640e-2267.53Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41037contigH-paniculata_contig41037:1029..1259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D8LUA8
KEGG koko:K05662
KEGG TC3.A.1.210
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0008150,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031154,GO:0031224,GO:0032502,GO:0032991,GO:0042623,GO:0042626,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071944,GO:0090702,GO:0098533,GO:0098796,GO:0098797,GO:0099120,GO:1902494,GO:1902495,GO:1904949,GO:1990351
EggNOG free text desc.ATP-binding cassette subfamily B
EggNOG OGsCOG5265@1,KOG0057@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930253.6349907-CDS-H-paniculata_contig41037:1028..12591622930253.6349907-CDS-H-paniculata_contig41037:1028..1259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41037 1029..1259 +
1691481211.7050314-CDS-H-paniculata_contig41037:1028..12591691481211.7050314-CDS-H-paniculata_contig41037:1028..1259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41037 1029..1259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41037.10576.1prot_H-paniculata_contig41037.10576.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41037 1029..1259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41037.10576.1

>prot_H-paniculata_contig41037.10576.1 ID=prot_H-paniculata_contig41037.10576.1|Name=mRNA_H-paniculata_contig41037.10576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
VSDSLVNYETVKYFNNEAHEASRYDDSLRGFQKASLKTQTSLSALNFGQS
AIFSVGLTGIMALAASDIGESTRLSLG
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mRNA from alignment at H-paniculata_contig41037:1029..1259+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41037.10576.1 ID=mRNA_H-paniculata_contig41037.10576.1|Name=mRNA_H-paniculata_contig41037.10576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig41037:1029..1259+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCGGACTCTCTCGTAAACTACGAAACGGTGAAGTACTTCAACAACGA
AGCGCACGAGGCCTCCCGTTACGACGACTCCCTCCGGGGGTTCCAGAAAG
CTTCCCTCAAGACGCAGACCTCTCTTAGCGCACTGAACTTTGGCCAGAGC
GCTATCTTCAGCGTAGGACTGACGGGCATCATGGCTCTCGCGGCCTCCGA
CATCGGTGAGTCGACTCGTCTTTCGCTTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig41037:1029..1259+

>mRNA_H-paniculata_contig41037.10576.1 ID=mRNA_H-paniculata_contig41037.10576.1|Name=mRNA_H-paniculata_contig41037.10576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig41037:1029..1259+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCGGACTCTCTCGTAAACTACGAAACGGTGAAGTACTTCAACAACGA
AGCGCACGAGGCCTCCCGTTACGACGACTCCCTCCGGGGGTTCCAGAAAG
CTTCCCTCAAGACGCAGACCTCTCTTAGCGCACTGAACTTTGGCCAGAGC
GCTATCTTCAGCGTAGGACTGACGGGCATCATGGCTCTCGCGGCCTCCGA
CATCGGTGAGTCGACTCGTCTTTCGCTTGGAGTGTCGGACTCTCTCGTAA
ACTACGAAACGGTGAAGTACTTCAACAACGAAGCGCACGAGGCCTCCCGT
TACGACGACTCCCTCCGGGGGTTCCAGAAAGCTTCCCTCAAGACGCAGAC
CTCTCTTAGCGCACTGAACTTTGGCCAGAGCGCTATCTTCAGCGTAGGAC
TGACGGGCATCATGGCTCTCGCGGCCTCCGACATCGGTGAGTCGACTCGT
CTTTCGCTTGGA
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