mRNA_H-paniculata_contig41009.10570.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41009.10570.1
Unique NamemRNA_H-paniculata_contig41009.10570.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig41009.10570.1 vs. uniprot
Match: D7FI59_ECTSI (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI59_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 4.710e-28
Identity = 63/87 (72.41%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:    4 GVLFAPYKAILAVALAEK-WSGSEGARATLREGLGLTTPGDEVWAPLGEATKFLHPEDRVRLLVDMLPFFEGSAEEQQGLLEVKEAL 261
            GVLFAPYKAILA ALA   W GSE   ATLREGLGLT  GDE W PLGEATKFLHPEDRVRLLVD +  F G  E +Q LLEVK+ L
Sbjct:  377 GVLFAPYKAILAEALASSCWMGSEEQIATLREGLGLTPAGDEFWGPLGEATKFLHPEDRVRLLVDFVRAFSGEEEMRQALLEVKDVL 463
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BLAST of mRNA_H-paniculata_contig41009.10570.1 vs. uniprot
Match: A0A7S2V1Y5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.430e-12
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:    7 VLFAPYKAILAVALAEKWSGSEGARATLREGLGLTTPGDEVWAPLG-EATKFLHPEDRVRLLVDMLPFFEGSAEEQQGLLEV 249
            V+F P+KA  AV LA+K++GSEG    LR+ LGL  P  E W PLG   T  +  E+++ L+ +++P FEGS +E+  L EV
Sbjct:  390 VIFPPFKAKAAVVLAKKYTGSEGMEDQLRQSLGLNPPSPEFWLPLGANLTANMDVEEKMMLIAELVPLFEGSEDERSSLQEV 471
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BLAST of mRNA_H-paniculata_contig41009.10570.1 vs. uniprot
Match: A0A835Z0R9_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.580e-11
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    4 GVLFAPYKAILAVALA-EKWSGSEGARATLREGLGLTTPGDEVWAPLGEATKFLHPEDRVRLLVDMLPFF 210
            G+L+ PYKA+LA  LA + W+ S+   A L+EGLG+T  G++ W PLG+ T  + PED+V LL  ++P F
Sbjct:  378 GILYPPYKALLASRLATDGWTNSDAQIAALKEGLGMTKVGEDFWGPLGKLTMQMAPEDKVLLLTSLIPLF 447
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BLAST of mRNA_H-paniculata_contig41009.10570.1 vs. uniprot
Match: K8ZC85_NANGC (Methyltransf_11 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZC85_NANGC)

HSP 1 Score: 59.3 bits (142), Expect = 2.820e-8
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:   25 KAILAVALAEKWSGSEGARATLREGLGLTTPGDEVWAPLGEATKFLHPEDRVRLLVDMLPFFEGSAEEQQGLLEVKEALPQV 270
            KA+LA  +A  + G+E     LR+GLGL+ P  + WAPLG+ T  ++ ED+V LL + +P   G   E++ L E+   L +V
Sbjct:  404 KALLATRVAVHYHGTEEELEQLRQGLGLSEPSPDFWAPLGKMTGMMNAEDKVLLLAECVPLHAGKEAEKRALGELVPTLEKV 485
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BLAST of mRNA_H-paniculata_contig41009.10570.1 vs. uniprot
Match: A0A6U0IYD4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IYD4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.260e-7
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   58 WSGSEGARATLREGLGLTTPGDEVWAPLGEATKFLHPEDRVRLLVDMLPFFEGSAEEQQGLLE 246
            +S +E    +L+EGLGL TPGD+ W P+G  T  + PED+V LL  ++P F     EQ+  L+
Sbjct:   23 FSANEEQIRSLKEGLGLRTPGDDFWMPVGTLTANMDPEDKVNLLSHIVPRFGSGNAEQEAALQ 85
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BLAST of mRNA_H-paniculata_contig41009.10570.1 vs. uniprot
Match: F0Y0P8_AURAN (Methyltransf_11 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0P8_AURAN)

HSP 1 Score: 54.3 bits (129), Expect = 1.640e-6
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:    7 VLFAPYKAILAVALAEKWSGSEGA-RATLREGLGLTTPGDEVWAPLGEATKFLHPEDRVRLLVDMLPFFEGSAEEQQGL 240
            V+  P  A  +  +A +W  + GA R  L+EGLG+ TP D  W PLG+ T  L  +D++ LL D LP F+   +++  +
Sbjct:  377 VIATPLLAQFSANVACRWDPASGAQRKALKEGLGMATPRDGFWKPLGDTTAALSVDDKLWLLADCLPHFQTYGDDEDAV 455
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BLAST of mRNA_H-paniculata_contig41009.10570.1 vs. uniprot
Match: A0A7S4I733_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I733_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 9.570e-5
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   82 ATLREGLGLTTPGDEVWAPLGEATKFLHPEDRVRLLVDMLPFFEGSAEEQQGLLE 246
            A L+ GLGL TP +E W P+G  T  +  ED++ LL  ++P F  S  +Q+  LE
Sbjct:  477 AALKMGLGLRTPSEEFWMPVGTQTANMDAEDKINLLAHVVPRFGSSDPDQEAALE 531
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41009.10570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FI59_ECTSI4.710e-2872.41Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A7S2V1Y5_9STRA2.430e-1245.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z0R9_9STRA1.580e-1147.14Methyltransf_11 domain-containing protein n=1 Tax=... [more]
K8ZC85_NANGC2.820e-839.02Methyltransf_11 domain-containing protein n=3 Tax=... [more]
A0A6U0IYD4_9STRA3.260e-742.86Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
F0Y0P8_AURAN1.640e-636.71Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A7S4I733_9STRA9.570e-541.82Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41009contigH-paniculata_contig41009:1368..1637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue3.3e-24
Seed eggNOG ortholog2880.D7FI59
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2CYIA@1,2S4JX@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930253.0838678-CDS-H-paniculata_contig41009:1367..16371622930253.0838678-CDS-H-paniculata_contig41009:1367..1637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41009 1368..1637 -
1691481211.387648-CDS-H-paniculata_contig41009:1367..16371691481211.387648-CDS-H-paniculata_contig41009:1367..1637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41009 1368..1637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41009.10570.1prot_H-paniculata_contig41009.10570.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41009 1368..1637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41009.10570.1

>prot_H-paniculata_contig41009.10570.1 ID=prot_H-paniculata_contig41009.10570.1|Name=mRNA_H-paniculata_contig41009.10570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
AGVLFAPYKAILAVALAEKWSGSEGARATLREGLGLTTPGDEVWAPLGEA
TKFLHPEDRVRLLVDMLPFFEGSAEEQQGLLEVKEALPQV
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mRNA from alignment at H-paniculata_contig41009:1368..1637-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41009.10570.1 ID=mRNA_H-paniculata_contig41009.10570.1|Name=mRNA_H-paniculata_contig41009.10570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=270bp|location=Sequence derived from alignment at H-paniculata_contig41009:1368..1637- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGGAGTACTTTTCGCGCCGTACAAGGCTATCTTGGCCGTCGCCCTGGC
TGAGAAGTGGAGCGGCTCGGAGGGGGCACGGGCGACTCTGCGAGAAGGGC
TCGGCCTGACGACCCCGGGGGATGAGGTGTGGGCCCCCCTGGGCGAGGCC
ACGAAATTCTTACACCCGGAAGACAGGGTGAGGTTGTTGGTGGACATGTT
GCCGTTCTTCGAGGGGTCTGCGGAGGAGCAGCAGGGATTGTTGGAGGTCA
AGGAAGCTCTTCCGCAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig41009:1368..1637-

>mRNA_H-paniculata_contig41009.10570.1 ID=mRNA_H-paniculata_contig41009.10570.1|Name=mRNA_H-paniculata_contig41009.10570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig41009:1368..1637- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGGAGTACTTTTCGCGCCGTACAAGGCTATCTTGGCCGTCGCCCTGGC
TGAGAAGTGGAGCGGCTCGGAGGGGGCACGGGCGACTCTGCGAGAAGGGC
TCGGCCTGACGACCCCGGGGGATGAGGTGTGGGCCCCCCTGGGCGAGGCC
ACGAAATTCTTACACCCGGAAGACAGGGTGAGGTTGTTGGTGGACATGTT
GCCGTTCTTCGAGGGGTCTGCGGAGGAGCAGCAGGGATTGTTGGAGGTCA
AGGAAGCTCTTCCGCAGGTGGCTGGAGTACTTTTCGCGCCGTACAAGGCT
ATCTTGGCCGTCGCCCTGGCTGAGAAGTGGAGCGGCTCGGAGGGGGCACG
GGCGACTCTGCGAGAAGGGCTCGGCCTGACGACCCCGGGGGATGAGGTGT
GGGCCCCCCTGGGCGAGGCCACGAAATTCTTACACCCGGAAGACAGGGTG
AGGTTGTTGGTGGACATGTTGCCGTTCTTCGAGGGGTCTGCGGAGGAGCA
GCAGGGATTGTTGGAGGTCAAGGAAGCTCTTCCGCAGGTG
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