mRNA_H-paniculata_contig11630.1056.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig11630.1056.1
Unique Name	mRNA_H-paniculata_contig11630.1056.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig11630.1056.1 vs. uniprot
Match: A0A6H5KTH9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTH9_9PHAE)

HSP 1 Score: 402 bits (1034), Expect = 1.710e-132
Identity = 234/383 (61.10%), Postives = 290/383 (75.72%), Query Frame = 1

Query:   85 QRLLLLAFTVEGFLANTQIGSAFVAST-SARR-----GCGRELRPRKCDTTTSMRAGSG--GLGNVATKVVAASLLGLQCL-MPAAALANQMAG----RSPVVVAGVKIAKPVAALSTEEEMIE-EVEKLELKTEVESDLKNQSKKKREKLPDVFAPPKKGKQAPRLELLNIPDSKLAESVGVIQGLAPYLDEVEYLITARSWDYLKGFLGVFSSCEGDFVDLIDGMYPTNSPSDVSARDSMQLEAQNIFLAVDDLYNASMSKKVKGAEKAYIRLALAYDRFMKAGDILERYDPVSSTEKFFNDIPDDMLRYERNSKVPLEVRESVLILKGPDKGRTAHIVGIIKSRSEAIVRIDGKV-REMRILELNDIARTLRDDDGVKFG 1188
            +R +LL F +EG  ++T  GSAFV S  S+RR       G   R R+ ++  SM AGSG  G G V  K V A LLGLQ L +P   ++ Q  G    R  VV A  ++  P A  + EE+ +E E+EK E KT+VE +LK QSK KR  LP+    PKKGKQ+PR++L+ + + KLA+SV  IQGLAPYLDEVEYLIT+RSWDYLKGFLGVF++CE DFV LIDGMYPT+ P DVS+RDSMQLEAQN+FLAVDDLY ASM+KKVKG+EKAY++LAL+YDRF+KAG+I+  YDPVS+TEKFF DIPD+MLRYER+SKVPL VR++VLILKGPDKGRTA +VG+IKSR++A+VR+DG + REMRILEL+DIAR L DD  +  G
Sbjct:    3 RRYVLLIFVLEGICSSTASGSAFVFSKLSSRRQQWAWAAGSTQRGRR-NSGCSMGAGSGEGGRGEVMNKAVVAGLLGLQLLSLPLGVVSRQPRGAALPRLDVVSAAAEVTAPQA--TEEEKFVEIELEKFERKTQVEGNLKKQSKAKRVPLPEELQTPKKGKQSPRVKLVPVSNDKLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEEDFVALIDGMYPTDKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFTDIPDEMLRYERDSKVPLTVRDAVLILKGPDKGRTAIVVGVIKSRNQAVVRMDGTLTREMRILELSDIARQLPDDPKMTAG 382

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BLAST of mRNA_H-paniculata_contig11630.1056.1 vs. uniprot
Match: A0A836C8F8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F8_9STRA)

HSP 1 Score: 240 bits (612), Expect = 5.120e-72
Identity = 115/205 (56.10%), Postives = 162/205 (79.02%), Query Frame = 1

Query:  547 LLNIPDSKLAESVGVIQGLAPYLDEVEYLITARSWDYLKGFLGVFSSCEGDFVDLIDGMYPTNSPSDVSARDSMQLEAQNIFLAVDDLYNASMSKKVKGAEKAYIRLALAYDRFMKAGDILERYDPVSSTEKFFNDIPDDMLRYERNSKVPLEVRESVLILKGPDKGRTAHIVGIIKSRSEAIVRIDGKVREMRILELNDIARTL 1161
            ++ + D++L  +V  IQ L PYL+EVEYLIT+++W YL+GFLGVFS  E +FVDLIDG+YPT SP+D S+R++MQ EAQN+FLA+DDL  AS  K+ K AEK++++LALAYDRF+KAG +++ YDP++STE F++ IPD  L Y+     P E+++++LILKGPDKGRT  ++G+IKSR EAIVR+D   +E+++L L DIA+ L
Sbjct:    1 MVPVRDNQLETAVAKIQALNPYLEEVEYLITSKNWGYLQGFLGVFSEQEENFVDLIDGLYPTESPADKSSREAMQYEAQNVFLALDDLNTASRYKRAKAAEKSFVKLALAYDRFLKAGGLVQTYDPITSTEPFYSSIPDSALVYDTTK--PPELKDNILILKGPDKGRTGRLIGVIKSRQEAIVRMDHN-KEVKLLSLGDIAKQL 202

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BLAST of mRNA_H-paniculata_contig11630.1056.1 vs. uniprot
Match: A0A7S2RHK3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHK3_9STRA)

HSP 1 Score: 146 bits (369), Expect = 6.390e-35
Identity = 74/200 (37.00%), Postives = 128/200 (64.00%), Query Frame = 1

Query:  592 IQGLAPYLDEVEYLITARSWDYLKGFLGVFSSCEGDFVDLIDGMYPTNSPSDVSARDSMQLEAQNIFLAVDDLYNASMSKKVKGAEKAYIRLALAYDRFMKAGDILERYDPVSSTEKFFNDIPDDMLRYERNSKVPLEVRESVLILKGPDKGRTAHIVGIIKSRSEAIVRIDGKVR--------EMRILELNDIARTLRD 1167
            I+ L  YL+E+E  I AR WD L  ++GVF   E  F ++ID +  + + +D  A+ +M+ EA+ +FL +D +  A+  + ++ AEK+Y++LA+AYDRF+KA D+ + YD    T K +  IP+D+L Y+R    P  V++ VLI+ GPDKGRT  ++G+  + S+ +VR++ + R        E+++++L ++A+T+ D
Sbjct:  170 IKVLYAYLEEMERDIFARKWDTLSSYIGVFEKQELAFENIIDSLRTSQAAADRDAKRAMEYEARQMFLTLDAMAEATRFRDIRQAEKSYVQLAIAYDRFLKAADLYDVYDDTD-TSKLYESIPEDLLVYDRED--PPRVQDDVLIIAGPDKGRTGKLIGVSDASSKGVVRVEYRKRTASKDASFEVKVVDLQNVAKTIPD 366

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BLAST of mRNA_H-paniculata_contig11630.1056.1 vs. uniprot
Match: A0A7R9U506_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U506_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.380e-32
Identity = 70/170 (41.18%), Postives = 109/170 (64.12%), Query Frame = 1

Query:  565 SKLAESVGVIQGLAPYLDEVEYLITARSWDYLKGFLGVFSSCEGDFVDLIDGMYPTNSPSDVSARDSMQLEAQNIFLAVDDLYNASMSKKVKGAEKAYIRLALAYDRFMKAGDILERYDPVSSTEKFFNDIPDDMLRYERNSKVPLEVRESVLILKGPDKGRTAHIVGII 1074
            S++A +   I  L PY+DE+E  I    ++ L+ FL VFS  E  FV  IDG+    +   ++A ++M+ EA+ +FLA+D++  A+  +K  G +K YI+LALAYDR++KA D L  YD + STEK+F +IPD+ L ++   K   E ++ V+ ++GPDKGRT  ++G I
Sbjct:  112 SEIATARRKIAALKPYMDEIERYIFTNDYEPLRAFLNVFSQQEDSFVKTIDGVASRGTADAIAAAEAMEHEAKQLFLALDEIRKAATLEKPSGLKKGYIKLALAYDRYLKASDNLPGYDKIVSTEKYFANIPDEWLVFDTEKKP--EPQDPVIFIEGPDKGRTGVLLGYI 279

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BLAST of mRNA_H-paniculata_contig11630.1056.1 vs. uniprot
Match: A0A7S2UZ25_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ25_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.100e-31
Identity = 80/195 (41.03%), Postives = 119/195 (61.03%), Query Frame = 1

Query:  544 ELLNIPDSKLAESVGVIQGLAPYLDEVEYLITARSWDYLKGFLGVFSSCEGDFVDLIDGMYPTNSPSDVSARDSMQLEAQNIFLAVDDLYNASMSKKVKGAEKAYIRLALAYDRFMKAGDILERYDPVS-STEKFFNDIPDDML---RYERNSKVPLE---VRESVLILKGPDKGRTAHIVGIIKSRSEAIVRID 1107
            ++  +  S LAE+   IQ L PY+DEVE  I    W  + GFLGVFS  E  FV+LIDG++P+NSP D  +R+SMQ EAQ +FLA+D+L  A+  K+V+ +  AY +LA +Y RF++A  ++ + D    +T    ND   +M    +YE   +  LE    R+ VL++ GPDKGR   +V I +   +A+V++D
Sbjct:  172 KVTGVGKSDLAEAKIKIQALQPYVDEVENYIYEERWPLMGGFLGVFSEQEDQFVNLIDGLFPSNSPLDTISRESMQYEAQRMFLALDELREAAKLKQVRISRDAYSKLAKSYFRFLEAAALVPKVDLAQLATSTNLNDSEMEMEAEEKYEERKQSTLERPEPRDEVLLVSGPDKGRLGKLVAI-EINGKAVVKLD 365

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BLAST of mRNA_H-paniculata_contig11630.1056.1 vs. uniprot
Match: A0A6U4CV34_9STRA (Hypothetical protein n=10 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CV34_9STRA)

HSP 1 Score: 119 bits (298), Expect = 9.810e-26
Identity = 77/188 (40.96%), Postives = 115/188 (61.17%), Query Frame = 1

Query:  562 DSKLAESVGVIQGLAPYLDEVEYLITARSWDYLKGFLGVFSSCEGDFVDLIDGM-YPTNSPSDVSARDSMQLEAQNIFLAVDDLYNASMSKKVKGAEKAYIRLALAYDRFMKAGDILER-YDPVSSTEKFFNDIPDDMLRYERNSKVPLEVRESVLILKGPDKGRTAHIVGIIKSRSEAIV---RIDG 1110
            +S++ ++   I  L PYLDE++  I    +  L+ FL VFS+ E  F+  I+ +   +  P+     ++M+ EA+ IFLA+DD+  A+  +K    +K YI+LALAYDR++KA D L   YD V STEKFF D+PD+ L Y+  + +P+ + + VL + GPDKGRT  ++G  KSR  A V    IDG
Sbjct:  116 NSEVRKAREKIAALKPYLDEIQRYIYTEDYAPLRAFLNVFSAQEEAFLTTIESVGSASRGPAASVTAEAMEHEAKEIFLALDDIRKAATLQKPVALKKGYIKLALAYDRYLKASDNLPLGYDNVVSTEKFFADVPDEWLVYDTET-LPVSL-DPVLFIAGPDKGRTGILLGY-KSRPIADVAANEIDG 300

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BLAST of mRNA_H-paniculata_contig11630.1056.1 vs. uniprot
Match: D7FKJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ3_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.650e-25
Identity = 62/203 (30.54%), Postives = 123/203 (60.59%), Query Frame = 1

Query:  592 IQGLAPYLDEVEYLITARSWDYLKGFLGVFSSCEGDFVDLIDGMYPTNSPSDVSARDSMQLEAQNIFLAVDDLYNASMSKKVKGAEKAYIRLALAYDRFMKAGDILERYDPVSSTEKFFNDIPDDMLRYERNSKVPLEVRESVLILKGPDKGRTAHIVGI---IKSRSEAIVRIDGK----VREMRILELNDIARTLRDDDGV 1179
            ++  A  LDE++  I+   WD +  +   F +    F    D  +PT+ P D ++R +++ E    + AV+ L  A+  +  + A+ A+  +++AYDR++KAG++ + YD V+STE F+ D+ +  L+Y   SK P +++++VL++ GPDKG+T  ++G+     S ++AIV+++      +RE++++ L+ +A+T+ D  G+
Sbjct:  134 LRRAAKMLDELQDDISNSDWDLVTTYPNAFRTLVPVFTKYTDAAFPTDDPVDTTSRVALRYEVGRFYGAVERLKRAAEQQNSREAQSAFAAMSVAYDRYLKAGNLYDGYDSVTSTEGFYADVSNSSLKYVPPSKDPPKIKDNVLLVAGPDKGKTGFMIGVEGGSLSATKAIVKLETSSALGMREIKVVPLDYVAKTV-DQQGM 335

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BLAST of mRNA_H-paniculata_contig11630.1056.1 vs. uniprot
Match: A0A0G4GSY0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GSY0_VITBC)

HSP 1 Score: 118 bits (295), Expect = 2.160e-25
Identity = 69/221 (31.22%), Postives = 121/221 (54.75%), Query Frame = 1

Query:  541 LELLNIP-DSKLAESVGVIQGLAP-------YLDEVEYLITARSWDYLKGFLGVFSSCEGDFVDLIDGMYPTNSPSDVSARDSMQLEAQNIFLAVDDLYNASMSKKVKGAEKAYIRLALAYDRFMKAGDILERYDPVSSTEKFFNDIPDDMLRYERNSKVPLEVRESVLILKGPDKGRTAHIVGI-----IKSRSEAIVRID---GKVREMRILELNDIAR 1155
            L L  +P  S+ A++  + Q +AP        LDE++  I    WD L  +     +    F    D  +P   P D + R +++ E   +F +V+ L  A   K V+  E+A+  +++++DR++KAGD+ E YDP+ STEKFF  + D  L Y    + P ++R+ VL+L+GPDKG+T  ++G+      K + + +V++D   G +RE++++    IA+
Sbjct:   87 LSLGGVPLPSEAAKNTALAQKIAPRIRQIATVLDELQADIYDEDWDILASYPQQLRAYVPIFTKYTDSAFPGKDPVDENTRFALRYEVGRLFGSVERLKRAVDKKDVRETEEAFAAMSVSFDRYLKAGDLYEVYDPIISTEKFFEGVEDSQLVYVPPLRDPPKIRDQVLLLRGPDKGKTGILLGVEGDEVAKVKRKGVVKLDTKVGSIRELKVVPYAFIAK 307

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BLAST of mRNA_H-paniculata_contig11630.1056.1 vs. uniprot
Match: A0A7S3Y3I2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3I2_HETAK)

HSP 1 Score: 113 bits (283), Expect = 4.090e-24
Identity = 62/208 (29.81%), Postives = 118/208 (56.73%), Query Frame = 1

Query:  592 IQGLAPYLDEVEYLITARSWDYLKGFLGVFSSCEGDFVDLIDGMYPTNSPSDVSARDSMQLEAQNIFLAVDDLYNASMSKKVKGAEKAYIRLALAYDRFMKAGDILERYDPVSSTEKFFNDIPDDMLRYERNSKVPLEVRESVLILKGPDKGRTAHIVGIIKS-------RSEAIVRIDG------KVREMRILELNDIARTLRDDDG 1176
            ++ +A  LDE++  I    W+++  +   F +    F    D  +     +D  +R +++ E   +F AV+ L  A+  K  + A+ A+ ++++AYDR++KAG + + YDPV+STEKFF D+PD  LR+   +  P ++++ VL+  GPDKG+T  ++G+ ++       +   IV++D       K+RE++++    +A+ L D +G
Sbjct:   91 LRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETLGSKGEKKKSGIVKLDNTIGRVSKIREIKVVPYAIVAKRL-DTEG 297

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BLAST of mRNA_H-paniculata_contig11630.1056.1 vs. uniprot
Match: A0A7S4RLA6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RLA6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.200e-23
Identity = 59/197 (29.95%), Postives = 108/197 (54.82%), Query Frame = 1

Query:  592 IQGLAPYLDEVEYLITARSWDYLKGFLGVFSSCEGDFVDLIDGMYPTNSPSDVSARDSMQLEAQNIFLAVDDLYNASMSKKVKGAEKAYIRLALAYDRFMKAGDILERYDPVSSTEKFFNDIPDDMLRYERNSKVPLEVRESVLILKGPDKGRTAHIVGIIKS-RSEAIVRIDGK--VREMRILELNDIARTLRDDD 1173
            I+G+   +DE++  +    WD ++ + G F S    F    D  +P++ P+D   R +++ E    F +++ L  A+  + +  A  AY  ++L +DR+++ G +   YD + STE  F +IPD+ L +    K P EVR+ V++ KGPDKG+   ++GI    +   +V++D    +RE+R+L L  + + L + D
Sbjct:  110 IRGVVGIMDELQRDLMQERWDLVEKYPGQFRSYVPVFTTYTDSAFPSDEPTDQGLRVALRYEVGRFFASLERLRQATTRRSLNEAYTAYADMSLHFDRYLRVGGLYTYYDSLISTEPLFTNIPDNALIFSDPKKDPPEVRDLVVVTKGPDKGKIGIVIGIYPDGKGNCVVKLDRYKGLREIRVLPLLWVGKRLGEQD 306

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig11630.1056.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig11630.1056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KTH9_9PHAE	1.710e-132	61.10	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836C8F8_9STRA	5.120e-72	56.10	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2RHK3_9STRA	6.390e-35	37.00	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7R9U506_9STRA	6.380e-32	41.18	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S2UZ25_9STRA	3.100e-31	41.03	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A6U4CV34_9STRA	9.810e-26	40.96	Hypothetical protein n=10 Tax=Phaeomonas parva Tax...	[more]
D7FKJ3_ECTSI	1.650e-25	30.54	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A0G4GSY0_VITBC	2.160e-25	31.22	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
A0A7S3Y3I2_HETAK	4.090e-24	29.81	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S4RLA6_9STRA	4.200e-23	29.95	Hypothetical protein n=2 Tax=Ditylum brightwellii ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig11630	contig	H-paniculata_contig11630:1644..8139 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	119.4
Seed ortholog evalue	3.7e-24
Seed eggNOG ortholog	2880.D7FKJ3
Hectar predicted targeting category	signal peptide
EggNOG OGs	2BGND@1,2S19T@2759
Ec32 ortholog description	Translation protein SH3-like domain
Ec32 ortholog	Ec-12_002220.1
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	8
Model size	1872
Cds size	1140
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig11630.1056.1	prot_H-paniculata_contig11630.1056.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig11630 1716..7479 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928873.0687153-UTR-H-paniculata_contig11630:1643..1715	1622928873.0687153-UTR-H-paniculata_contig11630:1643..1715	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig11630 1644..1715 +
1691480652.2698507-UTR-H-paniculata_contig11630:1643..1715	1691480652.2698507-UTR-H-paniculata_contig11630:1643..1715	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig11630 1644..1715 +
1622928873.16383-UTR-H-paniculata_contig11630:7479..8139	1622928873.16383-UTR-H-paniculata_contig11630:7479..8139	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig11630 7480..8139 +
1691480652.3594453-UTR-H-paniculata_contig11630:7479..8139	1691480652.3594453-UTR-H-paniculata_contig11630:7479..8139	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig11630 7480..8139 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig11630:1644..8139+
coding sequence from alignment at H-paniculata_contig11630:1644..8139+

protein sequence of mRNA_H-paniculata_contig11630.1056.1

>prot_H-paniculata_contig11630.1056.1 ID=prot_H-paniculata_contig11630.1056.1|Name=mRNA_H-paniculata_contig11630.1056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=380bp
MHPAQRLLLLAFTVEGFLANTQIGSAFVASTSARRGCGRELRPRKCDTTT
SMRAGSGGLGNVATKVVAASLLGLQCLMPAAALANQMAGRSPVVVAGVKI
AKPVAALSTEEEMIEEVEKLELKTEVESDLKNQSKKKREKLPDVFAPPKK
GKQAPRLELLNIPDSKLAESVGVIQGLAPYLDEVEYLITARSWDYLKGFL
GVFSSCEGDFVDLIDGMYPTNSPSDVSARDSMQLEAQNIFLAVDDLYNAS
MSKKVKGAEKAYIRLALAYDRFMKAGDILERYDPVSSTEKFFNDIPDDML
RYERNSKVPLEVRESVLILKGPDKGRTAHIVGIIKSRSEAIVRIDGKVRE
MRILELNDIARTLRDDDGVKFGARMSGTT*

mRNA from alignment at H-paniculata_contig11630:1644..8139+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig11630.1056.1 ID=mRNA_H-paniculata_contig11630.1056.1|Name=mRNA_H-paniculata_contig11630.1056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6496bp|location=Sequence derived from alignment at H-paniculata_contig11630:1644..8139+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATCCCTTTCGTTTGCGTGTAGCCTAAAGCGCTCACGAGTAGATCAACG
TTGAAGGCGAAGTCATCTCGGCATGCATCCAGCGCAAAGATTGCTTCTGC
TTGCCTTTACAGTGGAAGGTTTTCTGGCGAACACTCAAATAGGGAGCGCA
TTCGTGAGTATAACTCGTGCATACAGACAGTACAATGCAGTACCGTCATT
ACAGACAGACAGTAGTCGACGTGTCAAGGATCATGAATCTTTATCGACCG
AACTTCACCTTACAGTGCTGTCGACCTCAGCCACGGAACTAGCTAGATAC
TCCAGAGTGGTTGATCTGCACCTTGGTGGAGAAACCTACTTGATACATTG
GTCAGCAGGTGCTTTTCTGAGTATGGAGAATATGCTCGAGTCACGTATAC
TGTAACATGAACACATGTTACTTCCATTTTTTGCCATTCTGTCTCTCAAA
TGCTACTTTCACAAGGTACAGTAGCTTAGGACAAGCGTGCACGATACCAC
CCCCCGCGCGGGCGATTTGTACGTAACGTTTATTCAAAACTCCACTTTCT
CGACAATTACAGCGTACCGCCGAAAGATATTCCATTGCAAAGGTTTCATG
AAGATCTGTCGATAGATGTGCTCTTTCGACAGTGAATGCTCTGACTTCTC
GACCGAATCGAGCTTGCAAAAGGTAACCACCCGATATCAAGGTCATTGTG
TAGTAAGTTACGGCAAAAGTATCGGTTCGCTAGATCCTTCTGTTTCACAT
ACAACGCACAGAAAAGTACAGTCAGTATCGAGGATGCATAGTGTCACCAG
CACGCCATGGGTTTTTTTTACAATCTTGACACTCAGAGCGTGTGTTGCAC
CAATTCCATATCATGTTTAGCAGATCCTTGCGCAAACCGAGAATCGCAAA
TTTTCCATCTGGGGCAGAGATAACGGGTATTTTAAAGAACAGTACAATAA
AGTAGAACACAGAAAATGTGTAAGGGACTAAATTTACTTTCTGAAAGTAG
ACGATCGTTCCTGCCACTCGATCCAGCTATCAGGATCTCCAACCTTGACA
AAAATGCGGACTAATAGCGCTCTCGATATTGAATTTTGGGGAGAAATGTT
ATTCAGCATAATCTCCGCTGGTCTAAAATATGAAATATTACAGCTTACCC
CCAGACCAGGGGAGTTCGTATCTATCACTTGAAACAAAGGCCCCACAACC
GTATTCAACCGCCCCCCCAAAAAGGAGGGGCGAGGTTTCTCACCAGTTTC
CGATTTCAGACATGAACACTCACTAAAAGCCCATGCCACTCTTCGTTCAT
CGAATTTAGCCCTCTGAAGCGTTACTTGTCGTAATGTTGTCCATTTCAGC
GGCTGCTGACCTCCTCACCCAGAAGTTTTCCCTTGTTCTCTGCAGACGCG
TATAAGGATTATTCTATTCTGTACGTGGTCCTCTCCCTTGGGAATCTATG
GCTCGTCGCAACGAGATTTTTCCATTCCTTGTTCACAAGTGACTTGGCCT
ATTATTCGTTAATGGGTCATTTTGCCCTACTGTGTGTCTGGTCCAGAAGA
TATCCCACTCTTCGTGAGGTGGGTTCATAGTTTATGGTGCAATGCCCCCC
TCTGACTCTGACCCGGCTAGACGCCGCTTAGCTCCGCATAGTTTAGGCAG
AAGGGTTCATACCGGCGACGCCATTTTGAAAATATGATTTGTTCTCCACA
GACACTTATGGGAGTTTACCCCTTTTTGAAGGACATCCACATTTTGCATT
TTTTTTCAAGTAGACTATTCGTTTGGCGTTGGAGCGATCAGTCAGATGGC
TCCTTTCACCAGAGGTGACCAATAGGAAAACTACGGGCACTTCGTCCCTT
TCTCTCTTCCTGTTTGAAAACTACACAGCCACGATGACGGTGTGGCCAAG
AGCGGTGTTGGTCTGACGACCCCATTCCTGTGAATTATTCGTTGTCGGAG
GGCTATGTCTCCTTAGCCTGTGCTTAAAACTTCGAGCAGCTTCAAATTGA
GAGTTGACCGCCCAAGACTAGCTCTGCTTGCGTTGGGCTTAACGAAGGAA
AGAAATAATGAGTCACAGCCACCTGCGCTGTGCTCGAATTCCATATCCAC
GATGTCTTGTGGTCAAGAACAGGGTTGCTGGAAGAACATTATCCCGCTAG
CAGTACGTGCGAGAAGTCCAACAAGTCCAACACGTTTGCTGGAGATACCT
CATCCTTGCCAACAACTCTATTTCGCAGACCTGCTCATTGAATGTCTGTT
TATCTGGCTCACCCTGTCACGGACCGGGTTGGCCTCAAACTATGTTGACC
AACCACGATCTCAGGCCAACGTTGGTCGTTAGCCCATTATTATAACATGC
TGGAATTCTGGTTTAACATTTCATTTGCTAGTATCGAAAGGTACCACATT
GTTGTTAAAACTTGTGTATTTTTATCGTTAACCGGCGAATGAAGTGAAAA
TAGTTTGGAAAATAAATCGCTAATCGCCTAACAACAAACAGTATCTGTTT
ATCGTTTTGTTTTATACATCCTATCTGTCCAATACCCAACACCTAACACC
CGGACAGGTTGCCTCTACTTCTGCGCGAAGAGGATGCGGCCGGGAATTAC
GACCGCGAAAATGCGATACAACGACGTCCATGCGTGCGGGGAGCGGTGGG
CTGGGTAATGTTGCGACCAAGGTGGTTGCCGCGAGCCTCCTTGGTTTGCA
GTGTTTAATGCCAGCGGCTGCCTTGGCCAATCAAATGGCTGGCCGGTCTC
CGGTGGTTGTAGCAGGAGTTAAAATAGCGAAACCGGTTGCTGCTTTGTCG
ACAGAAGAGGAGATGATTGGTGCGTTCAAAACTACGGTTAGAGATTTATC
GATGGGCAGGCGTTTTCCCGAGCACAGCTCGCCACCTACTTGTTCCGTGC
CTTACTTAGTTTGAAGGACGACCTGTGCTATTTTCGTTGTGTGCACCTAG
TCTGCCCGAATATGTTCACATACTTTTGGGGCCGATAGTTGATTCTACAA
AACGATTGTGCATGTTGGTGGAAGTACTCGGCATTACGATGTTGTATTTC
ACATGATATCTTGCATGTGCAGCTGGACATGAATGCCCCCACTTAGTGAT
TCTGTCAGGTGGGGGGACATGAACGTTGTATTTATAACACAACATAAGTA
CGGTGGTCTGACCCCTTGACACAAAGTTATCACACATTGTCACTTGTGAG
TTCATGACTGTTCAGTTCCCTCACTGACATTTTCCTATTGTACTACCAAG
CTCACGAGCTTAACTGTTCTCGTTTAACTCGCAGAGGAGGTTGAAAAACT
GGAGCTGAAGACGGAGGTGGAGAGCGACTTGAAGAATCAATCTAAAAAAA
AGCGTGGTAAGGGCGTACGTATGGGACTCCAACGCGTCTAAGTCCGCTCT
TCTTGTACCTGTCCGCACTCTTCATTGAAATTGCTGTCCTCATGCCTATC
TGTGCGATGCGGGCGTGTTTTACGGCAAGGATCAAGTGCTAATGCCGTTG
TATTCCGACTGTTTTTCGTCTTGCTAGTGGCCACGTTTCTAACTGGCAGT
TTAAAGTGGTCGCGCTCCTCACTTCTGACTATCCTCGCGGCTAACCTGGA
TAGTGCATGCACACCTACCTTTTCCGTTTGGCTTTTATACAGAGAAATTA
CCGGACGTCTTTGCACCTCCTAAAAAGGGAAAGCAGGCCCCGCGCCTGGA
GCTGCTTAATATACCCGACTCCAAGCTGGCGGAGTCTGTGGGGGTTATCC
AAGGGCTCGCTCCGTATTTGGGTGAGCGAGAATGAACAGTTGTTAACTCC
GCCATAGCTTGTTTCCGGGGCGCGTTCATTGCTATGACATTACGGTAGCT
TTTAACGGATTGAGGTTGCTCTGGATATGGCCTTTTTTTTGTTCTGGAGG
CGATGTCTTGGCACTTCAGTCCAGCAATTGGTTCGACTTGAGGTGCCCTA
TAAGGGCACCGCTACTTTCGTGCTAACTGTTTATTCTCATTGGGTGCATG
CGTGTTGAACACACGCTGCCCTCCTCATTTTTTACCGCTATATTCTTAGC
GTATTAGAGCTACTTTCTCAGCATCATGACGTCGACATCCCTTCTCTTGC
ATTGCGGTTTGCAGACGAGGTGGAGTACTTGATAACGGCACGCAGCTGGG
ATTACCTGAAGGGTTTCCTGGGGGTGTTCAGCTCGTGCGAAGGGGACTTC
GTTGATTTGATCGACGGGATGTATCCAACCAACAGCCCCTCGGACGTTAG
CGCTCGGGACTCGATGCAACTCGAAGCGCAGAACATATTCCTCGCAGTGG
ACGACTTGTACAATGTACGTTTAAAACAGCACATATGCGTGTGCCCCGGC
GTACACTGGGCTGTTCCATAGCTGCAGGAATTGCAAGTGCCTGTGGTGCT
CAGCTTGACAGTGCAGTATTTTCTCAACAACAGCTCGGGTTGGATCCTAA
GCAGGAAAGGATTTTACTGTGGTGATGAGCCGGGCGTTGCTCAAGAAGGG
TGGTGATGGGGGTGGTTTTCGGGCCCGTTTGCGAAATACGGAGACCGCAT
TGTGGGTACTGCGTGAATGCCCGCGCCGTGCTTGTGGGTAAGCAACGATG
ACACATCGCGGCGTTAGCGCAAGCTATGAATCCCTTGTGCGTTCCTTCGC
TCCTTCCGTCTGTATCTGGCCGTACAAAGGCGTCGATGTCAAAAAAGGTG
AAGGGAGCAGAAAAGGCATACATCAGGCTTGCTCTGGCGTACGACCGGTT
CATGAAAGCGGGCGACATTCTTGAGCGGTGAGATGCTGCCGCTTTGCGGC
GTTAGAACGTGATATGGCGATTAGAACAGCAGCTTCTTTTGCCCGACGCC
TTTCCCACCGTCGTAACACGCCGCAAGTGTTTCGGTTAAATAAGTCGTTG
GCGCCTTTTGGCATTTTGATTTGCTCTTCTGCCACCGTTCCGCTAGAACC
CGCTTGGGCATAAAGTGGGTTGCGTCAGCGTATGATACGTAGCACGCTCG
CCCGAACATTCGCTGCTTGGTGGCTCTCGCTGCGCTCGGCCACTGTGCGT
CCCGACTCCTTCAGATACGATCCAGTATCCTCGACCGAGAAGTTTTTCAA
CGATATCCCGGACGACATGTTGCGCTACGAACGGAACTCGAAGGTCCCAT
TGGAAGTTCGCGAATCGGTGAGGGCACCCTGTCCTGATCTTCAAGTGTTA
TTTCGATAGAAGAGTAGGTCTCATTACTATTTTGAAGGTTCCGACTGCTT
CTGACCGCGCATAATGAGCACCCGCTCAGAGAAGGTGTTGTCCGCGCGCC
ATCGAAGCCACGGCATGGTTGTCGGATACTGGAAAGTGCCGGCATGGTTA
CCGCATGAGTTGGGCAGCTCTGACTTGCTGCTCGAACCACGAGGCGTGGG
GATTTGGGGCTTTTTCCCTGCGAAATTGTGTTTTTCTCCTTTTGGAATCC
ATAGGCATCAACGAAACGCTGCTGTCTAGCCCGGCCAGTATAGAGTGAAC
GCTGGGGTTTAAACGAGCTGGCACATACTGTTGCGTGTCCATAGCTGATG
TTGTTGCGATCAAGTGCTGGCACTAGCAGCGGAAGTTCGAGAATCCGCCT
GACCCCCTGGAACCCCCTCCCAAATTTTCGTTTGGAACCAGGTGCTTATC
CTGAAGGGACCGGATAAGGGGCGTACAGCTCACATTGTGGGTATCATCAA
GAGCCGATCTGAGGCGATCGTGCGGATCGACGGCAAAGTGCGGGAGATGC
GGATTTTGGAGCTGAACGATATTGCTCGCACGTTGCGAGATGATGATGGT
GTCAAATTTGGAGCGAGAATGTCTGGCACTACTTGATTACCATAGACATT
GTCTATCTCCATTGCTTCTCCCGGTGGTTTTAACCTGTTGACGGCGCAAG
AGAAAAACTGTCTGAGTTTTGAAATACGGTTCGTAGTGGATTGGATTTTC
TGCACCATATTCAGCGCTCTGGTGATGGTATCCCACCTACTCGAACAAGT
ACCTCACTGTTTTGATCAGGCTACTGTGCTGTAGTACTGTGGCTGACATC
GGTCTTATGTTCAAAGGTGTCGTTTTATAAGGTGCTGCGCGGCGTGATTT
TTGTCAACCAGAGCGCAGCACGAATTAAGCGGGCAACGTGCAAATTACGT
CGGCAAACGATGTCTTGACGCCGGACATGATAACGAAAAACAAAAGGGAA
AGTTGGACGGCTGGTCCTGGTAACATCTGGCCAGACGTAGGCTGCTTGCT
GTGTTCTTAGCGGCCAGTTTTCAGGAAGATATTTCGTGGATGGGTCGGGG
CTGGCGACCTCCTCATTCATGGCCGCAGATGCACCGATGTTTTCACCTAA
CAAGGGTTCACCGGCGCTTTTCACGGCGCATGGTGGACATTTTTTTTTTT
TTTTTACCCCCCGGAAGGCTGAGGCAAAACCCTTTCCGCTGCTTCCACTC
TTCGGCAGATTCCTTGGTGTCTGCATTTCCTTTTTTACTTGGCTCA

Coding sequence (CDS) from alignment at H-paniculata_contig11630:1644..8139+

>mRNA_H-paniculata_contig11630.1056.1 ID=mRNA_H-paniculata_contig11630.1056.1|Name=mRNA_H-paniculata_contig11630.1056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2280bp|location=Sequence derived from alignment at H-paniculata_contig11630:1644..8139+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCCAGCGCAAAGATTGCTTCTGCTTGCCTTTACAGTGGAAGGTTT
TCTGGCGAACACTCAAATAGGGAGCGCATTCATGCATCCAGCGCAAAGAT
TGCTTCTGCTTGCCTTTACAGTGGAAGGTTTTCTGGCGAACACTCAAATA
GGGAGCGCATTCGTTGCCTCTACTTCTGCGCGAAGAGGATGCGGCCGGGA
ATTACGACCGCGAAAATGCGATACAACGACGTCCATGCGTGCGGGGAGCG
GTGGGCTGGGTAATGTTGCGACCAAGGTGGTTGCCGCGAGCCTCCTTGGT
TTGCAGTGTTTAATGCCAGCGGCTGCCTTGGCCAATCAAATGGCTGGCCG
GTCTCCGGTGGTTGTAGCAGGAGTTAAAATAGCGAAACCGGTTGCTGCTT
TGTCGACAGAAGAGGAGATGATTGGTTGCCTCTACTTCTGCGCGAAGAGG
ATGCGGCCGGGAATTACGACCGCGAAAATGCGATACAACGACGTCCATGC
GTGCGGGGAGCGGTGGGCTGGGTAATGTTGCGACCAAGGTGGTTGCCGCG
AGCCTCCTTGGTTTGCAGTGTTTAATGCCAGCGGCTGCCTTGGCCAATCA
AATGGCTGGCCGGTCTCCGGTGGTTGTAGCAGGAGTTAAAATAGCGAAAC
CGGTTGCTGCTTTGTCGACAGAAGAGGAGATGATTGAGGAGGTTGAAAAA
CTGGAGCTGAAGACGGAGGTGGAGAGCGACTTGAAGAATCAATCTAAAAA
AAAGCGTGAGGAGGTTGAAAAACTGGAGCTGAAGACGGAGGTGGAGAGCG
ACTTGAAGAATCAATCTAAAAAAAAGCGTGAGAAATTACCGGACGTCTTT
GCACCTCCTAAAAAGGGAAAGCAGGCCCCGCGCCTGGAGCTGCTTAATAT
ACCCGACTCCAAGCTGGCGGAGTCTGTGGGGGTTATCCAAGGGCTCGCTC
CGTATTTGGAGAAATTACCGGACGTCTTTGCACCTCCTAAAAAGGGAAAG
CAGGCCCCGCGCCTGGAGCTGCTTAATATACCCGACTCCAAGCTGGCGGA
GTCTGTGGGGGTTATCCAAGGGCTCGCTCCGTATTTGGACGAGGTGGAGT
ACTTGATAACGGCACGCAGCTGGGATTACCTGAAGGGTTTCCTGGGGGTG
TTCAGCTCGTGCGAAGGGGACTTCGTTGATTTGATCGACGGGATGTATCC
AACCAACAGCCCCTCGGACGTTAGCGCTCGGGACTCGATGCAACTCGAAG
CGCAGAACATATTCCTCGCAGTGGACGACTTGTACAATACGAGGTGGAGT
ACTTGATAACGGCACGCAGCTGGGATTACCTGAAGGGTTTCCTGGGGGTG
TTCAGCTCGTGCGAAGGGGACTTCGTTGATTTGATCGACGGGATGTATCC
AACCAACAGCCCCTCGGACGTTAGCGCTCGGGACTCGATGCAACTCGAAG
CGCAGAACATATTCCTCGCAGTGGACGACTTGTACAATGCGTCGATGTCA
AAAAAGGTGAAGGGAGCAGAAAAGGCATACATCAGGCTTGCTCTGGCGTA
CGACCGGTTCATGAAAGCGGGCGACATTCTTGAGCGGCGTCGATGTCAAA
AAAGGTGAAGGGAGCAGAAAAGGCATACATCAGGCTTGCTCTGGCGTACG
ACCGGTTCATGAAAGCGGGCGACATTCTTGAGCGATACGATCCAGTATCC
TCGACCGAGAAGTTTTTCAACGATATCCCGGACGACATGTTGCGCTACGA
ACGGAACTCGAAGGTCCCATTGGAAGTTCGCGAATCGATACGATCCAGTA
TCCTCGACCGAGAAGTTTTTCAACGATATCCCGGACGACATGTTGCGCTA
CGAACGGAACTCGAAGGTCCCATTGGAAGTTCGCGAATCGGTGCTTATCC
TGAAGGGACCGGATAAGGGGCGTACAGCTCACATTGTGGGTATCATCAAG
AGCCGATCTGAGGCGATCGTGCGGATCGACGGCAAAGTGCGGGAGATGCG
GATTTTGGAGCTGAACGATATTGCTCGCACGTTGCGAGATGATGATGGTG
TCAAATTTGGAGCGAGAATGTCTGGCACTACTTGAGTGCTTATCCTGAAG
GGACCGGATAAGGGGCGTACAGCTCACATTGTGGGTATCATCAAGAGCCG
ATCTGAGGCGATCGTGCGGATCGACGGCAAAGTGCGGGAGATGCGGATTT
TGGAGCTGAACGATATTGCTCGCACGTTGCGAGATGATGATGGTGTCAAA
TTTGGAGCGAGAATGTCTGGCACTACTTGA