mRNA_H-paniculata_contig41.10559.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41.10559.1
Unique NamemRNA_H-paniculata_contig41.10559.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41.10559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41contigH-paniculata_contig41:37188..38101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size914
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41.10559.1prot_H-paniculata_contig41.10559.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41 37247..37804 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930251.2223961-UTR-H-paniculata_contig41:37187..372461622930251.2223961-UTR-H-paniculata_contig41:37187..37246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41 37188..37246 +
1691481210.4568462-UTR-H-paniculata_contig41:37187..372461691481210.4568462-UTR-H-paniculata_contig41:37187..37246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41 37188..37246 +
1622930251.2564664-UTR-H-paniculata_contig41:37804..381011622930251.2564664-UTR-H-paniculata_contig41:37804..38101Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41 37805..38101 +
1691481210.4773643-UTR-H-paniculata_contig41:37804..381011691481210.4773643-UTR-H-paniculata_contig41:37804..38101Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41 37805..38101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930251.240491-CDS-H-paniculata_contig41:37246..378041622930251.240491-CDS-H-paniculata_contig41:37246..37804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41 37247..37804 +
1691481210.467542-CDS-H-paniculata_contig41:37246..378041691481210.467542-CDS-H-paniculata_contig41:37246..37804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41 37247..37804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41.10559.1

>prot_H-paniculata_contig41.10559.1 ID=prot_H-paniculata_contig41.10559.1|Name=mRNA_H-paniculata_contig41.10559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MSCVSFELCLGVQQRIQFTVVCESTSRIYISWGIVVRCDTPHLLRVFWYI
LFFLFGVIQYGKSVCCGLVAGKKDVLVALMFQQTTREYTSAEKGGTVAVV
KRVCAEAGAITDSTVTSFIVTVQFGARSYQDGLADGGEDSIKIMPYSRSN
NDEKIWLCTACAPFACCSKNSVEESGYCRPISFLF*
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mRNA from alignment at H-paniculata_contig41:37188..38101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41.10559.1 ID=mRNA_H-paniculata_contig41.10559.1|Name=mRNA_H-paniculata_contig41.10559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=914bp|location=Sequence derived from alignment at H-paniculata_contig41:37188..38101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGGGAGGGGATCTTTTTTGGTGATACAGCGGAAATTGTGGCGCTGC
AGACACGTAATGTCATGTGTTAGCTTTGAGCTTTGTCTAGGTGTGCAGCA
AAGGATTCAATTCACTGTTGTATGTGAGTCTACGTCGAGGATCTACATAT
CTTGGGGTATCGTTGTACGCTGCGATACACCCCATTTGTTGCGCGTCTTT
TGGTACATACTTTTTTTTTTATTCGGCGTCATACAGTATGGGAAATCAGT
GTGCTGTGGATTAGTTGCGGGGAAAAAGGATGTACTTGTAGCACTCATGT
TCCAACAAACCACCAGAGAGTACACTAGTGCAGAGAAGGGAGGTACAGTA
GCTGTAGTCAAGCGTGTTTGTGCAGAGGCAGGTGCCATCACCGATTCAAC
TGTCACAAGCTTTATTGTTACTGTGCAGTTCGGGGCGCGCAGCTACCAAG
ATGGGTTGGCTGATGGTGGGGAAGACTCTATCAAGATTATGCCTTACTCG
AGGTCAAATAATGACGAAAAAATATGGCTGTGTACTGCTTGTGCGCCGTT
CGCCTGTTGTAGCAAGAATTCAGTAGAGGAATCAGGGTATTGCAGGCCTA
TCTCCTTTTTGTTTTAGTGGCTCGATCAATCGCTGAATAGTGTACTGAGA
GAGGTCCGGCAGCAGTTCCATCGTCATGTACCCAGAGCACTCTTTGTTCA
TGTCATAGTCCAGGCGACGCTTGATATTCATACATAATCACTTCCCATCG
CTAGTGCCACGGGGAGTGGATCTATCCCGTCAGTAAGTTTCCTCTTTGTT
GGAGGCTGGAGGATCACAACAGTACGGTATACCTCTACAAAGAGAAGGAA
GAGGTGGCCGTAAATTATTGGTTGATCACGTTTTTTTAATGGAACAATCA
GATTGATCTAAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig41:37188..38101+

>mRNA_H-paniculata_contig41.10559.1 ID=mRNA_H-paniculata_contig41.10559.1|Name=mRNA_H-paniculata_contig41.10559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig41:37188..38101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATGTGTTAGCTTTGAGCTTTGTCTAGGTGTGCAGCAAAGGATTCA
ATTCACTGTTGTATGTGAGTCTACGTCGAGGATCTACATATCTTGGGGTA
TCGTTGTACGCTGCGATACACCCCATTTGTTGCGCGTCTTTTGGTACATA
CTTTTTTTTTTATTCGGCGTCATACAGTATGGGAAATCAGTGTGCTGTGG
ATTAGTTGCGGGGAAAAAGGATGTACTTGTAGCACTCATGTTCCAACAAA
CCACCAGAGAGTACACTAGTGCAGAGAAGGGAGGTACAGTAGCTGTAGTC
AAGCGTGTTTGTGCAGAGGCAGGTGCCATCACCGATTCAACTGTCACAAG
CTTTATTGTTACTGTGCAGTTCGGGGCGCGCAGCTACCAAGATGGGTTGG
CTGATGGTGGGGAAGACTCTATCAAGATTATGCCTTACTCGAGGTCAAAT
AATGACGAAAAAATATGGCTGTGTACTGCTTGTGCGCCGTTCGCCTGTTG
TAGCAAGAATTCAGTAGAGGAATCAGGGTATTGCAGGCCTATCTCCTTTT
TGTTTTAGATGTCATGTGTTAGCTTTGAGCTTTGTCTAGGTGTGCAGCAA
AGGATTCAATTCACTGTTGTATGTGAGTCTACGTCGAGGATCTACATATC
TTGGGGTATCGTTGTACGCTGCGATACACCCCATTTGTTGCGCGTCTTTT
GGTACATACTTTTTTTTTTATTCGGCGTCATACAGTATGGGAAATCAGTG
TGCTGTGGATTAGTTGCGGGGAAAAAGGATGTACTTGTAGCACTCATGTT
CCAACAAACCACCAGAGAGTACACTAGTGCAGAGAAGGGAGGTACAGTAG
CTGTAGTCAAGCGTGTTTGTGCAGAGGCAGGTGCCATCACCGATTCAACT
GTCACAAGCTTTATTGTTACTGTGCAGTTCGGGGCGCGCAGCTACCAAGA
TGGGTTGGCTGATGGTGGGGAAGACTCTATCAAGATTATGCCTTACTCGA
GGTCAAATAATGACGAAAAAATATGGCTGTGTACTGCTTGTGCGCCGTTC
GCCTGTTGTAGCAAGAATTCAGTAGAGGAATCAGGGTATTGCAGGCCTAT
CTCCTTTTTGTTTTAG
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