mRNA_H-paniculata_contig41.10560.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41.10560.1
Unique NamemRNA_H-paniculata_contig41.10560.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41.10560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41contigH-paniculata_contig41:39767..41651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930251.129721-CDS-H-paniculata_contig41:39767..399301622930251.129721-CDS-H-paniculata_contig41:39767..39930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41 39768..39930 -
1691481210.4360533-CDS-H-paniculata_contig41:39767..399301691481210.4360533-CDS-H-paniculata_contig41:39767..39930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41 39768..39930 -
1622930251.1477842-CDS-H-paniculata_contig41:41613..416511622930251.1477842-CDS-H-paniculata_contig41:41613..41651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41 41614..41651 -
1691481210.4462442-CDS-H-paniculata_contig41:41613..416511691481210.4462442-CDS-H-paniculata_contig41:41613..41651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41 41614..41651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41.10560.1prot_H-paniculata_contig41.10560.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41 39768..41651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41.10560.1

>prot_H-paniculata_contig41.10560.1 ID=prot_H-paniculata_contig41.10560.1|Name=mRNA_H-paniculata_contig41.10560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
VAEGAVHVDVSPRSNDTILPPAPAPVIRDTPSQQQQQHFRRSFRLGSCVS
EEVVEMDIGDGMNMVQV
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mRNA from alignment at H-paniculata_contig41:39767..41651-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41.10560.1 ID=mRNA_H-paniculata_contig41.10560.1|Name=mRNA_H-paniculata_contig41.10560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1885bp|location=Sequence derived from alignment at H-paniculata_contig41:39767..41651- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCGGAAGGTGCCGTCCATGTCGATGTGTCGCCCAGGTGAGCTGTAGC
GCTCGTGGGGCTAACATATTTCAACGAATAACAGCGCGAGTGACGCCGTT
CAGTTAGCGTATGATCAACACGTTACATTTGCGATTTGACCTACGTGCAT
TGTCTAAACGTTTGTGTTTGAAACGTTTCTGGTGGATTTTAGTGCGGTTA
AGCAAGGTATTAACAGTTGTGTTTTGCCTTGAAGACATGTTCTAGGCGCG
AGTGCGTGCCGCCGCCGAGGATATTCTGCAGCTTCACCTCCCACAAAAAT
TGAAGTTTTGCTCCCATAAATGCTGCGGCCGTAACAGCACAGTCGGCTGG
CGGGTTCAATACCTCAGGCATGGGCTGGCAGCAGGGTCATGCCCATGGCA
CGTCCAGCAACGACAAGCAACTCGGTCGTAGTATATTATCTGGCAGCGCG
AATACGAAGAATTATCTTAAGTTTTTTGCTCACAAAGTTCCGTTTCACAC
CCCAACCGCGGTTGAGAACCTCGTCCATCAGTCTTGGAAACGTCACATGC
AACGACTGAGACACAAAAGGAAGCGTTCGGCGTGGCTGCCGGGGAAAGAG
TGCATTTTTGTCGGAAGTTCCTCATGAAGTATTTCATTTACTTTTCATAT
TCAAGTTTACAACCGTCAAGTACGGACTTCAGCAGGTGCTTTGAAATGCA
TGAGGTGGTTTACAACTTCAACATCTCGAAGGGTGTGCGATGTCGACATT
GCATTTCTGATCCCAGAGATGATATCCAATACGTGCTCACGGGTAAAACC
ACCCCAGACACACAATCATCATATTTCTGCTGTGGCATAATAAGTAAACT
GAAGAAAGCGCTAGTTACTGACTGCGTTGTACAGGACATTAATTTTTTGT
GTCATGTATCTCGCCTATTTTCAAGAATTGTCCGTTGAACCGTTTGCTCG
TTTTTGAAGATAGATGAACCCTGAAACTATCGTGTTTGTTACCTCCGCCG
CCTCTTTCACTCAACTCTCCCCACCCCTCACCAACTCAGAGGTATCGTTC
GGCTCGTGTCGTTCTCTATTTTGCCGATAGTGTAGCTCATATATCAGCGT
AGAGCTAGCTCTATTGCCGATATTAACTTAATAAATGTATTTGCAACGAA
AGGTTAGTAGATCAATACACAACAACAATTTCCGAATTTTTAAGGAAGTA
TTGGTGGAGGGCGGCGGAATTCAAACATTTCGTGCAATTGCCCTCCTCTT
TGTGGAGCCTCGGGTATGACATTTCATGGTGATCAAGCAGCAACATAAAA
TGATAACTAAGCTAAACAGAAGAGTAAGGAGATCACGTCAACGAAGAAGT
GTACCTCACGAAAGCCAAGTAAGATGCAGTTCTGAGTTGTGGTATTATTG
AGGGACGCGTCATCCTGCCTTAAATAGTTTAGCAGTATGTCTTCCGGCCA
GAATATATATTCAACACGCATGTGGCCATTTTGCTCAAGGGAAACACCAA
AGCTCGAGTTTCATTAATGGTTCTACTCGTACCACGTATTGGCATTTTTG
TTTCGCGCCAACCTTGTTGCCAAATGCTATGTCCCAACTCCGAAAGTCCT
ATCCCCTGTCGGACGTGTGGCTCCAGCATACCCTCTTGTCAACATGTACC
CCTCCCCCCTGCACTTCGCGTGAATCGATTTTTTTTTTGCGTCACAATCA
CGGTTTCCCTACGATTATCAGAAGTAATGACACTATTCTACCGCCGGCAC
CAGCACCCGTCATTCGCGACACTCCAAGTCAACAGCAGCAGCAGCACTTC
AGACGTAGCTTCCGTCTCGGAAGCTGCGTGAGCGAAGAAGTCGTTGAAAT
GGATATTGGCGACGGCATGAACATGGTGCAAGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig41:39767..41651-

>mRNA_H-paniculata_contig41.10560.1 ID=mRNA_H-paniculata_contig41.10560.1|Name=mRNA_H-paniculata_contig41.10560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig41:39767..41651- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCGGAAGGTGCCGTCCATGTCGATGTGTCGCCCAGGTTGCGGAAGGT
GCCGTCCATGTCGATGTGTCGCCCAGAAGTAATGACACTATTCTACCGCC
GGCACCAGCACCCGTCATTCGCGACACTCCAAGTCAACAGCAGCAGCAGC
ACTTCAGACGTAGCTTCCGTCTCGGAAGCTGCGTGAGCGAAGAAGTCGTT
GAAATGGATATTGGCGACGGCATGAACATGGTGCAAGTGAAGTAATGACA
CTATTCTACCGCCGGCACCAGCACCCGTCATTCGCGACACTCCAAGTCAA
CAGCAGCAGCAGCACTTCAGACGTAGCTTCCGTCTCGGAAGCTGCGTGAG
CGAAGAAGTCGTTGAAATGGATATTGGCGACGGCATGAACATGGTGCAAG
TG
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