mRNA_H-paniculata_contig40981.10557.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40981.10557.1
Unique NamemRNA_H-paniculata_contig40981.10557.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40981.10557.1 vs. uniprot
Match: A0A6H5JW60_9PHAE (Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW60_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.160e-32
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 FLQGYGWCTMEETTWGDGDHKWVRSGQLHTRGPGTYKIPSFNDVPLDMRVKLMDRQNAFAVHSSK 195
            F+QGYGWCTMEET+WGD +H WVR GQL T+GPGTYKIPSFNDVP DMRVKLMDR NAFAVHSSK
Sbjct:  472 FVQGYGWCTMEETSWGDSEHLWVRPGQLFTKGPGTYKIPSFNDVPSDMRVKLMDRANAFAVHSSK 536
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BLAST of mRNA_H-paniculata_contig40981.10557.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.670e-32
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 FLQGYGWCTMEETTWGDGDHKWVRSGQLHTRGPGTYKIPSFNDVPLDMRVKLMDRQNAFAVHSSK 195
            F+QGYGWCTMEET+WGD +H WV+ GQL T+GPGTYKIPSFNDVP DMRVKLMDR NAFAVHSSK
Sbjct: 1362 FIQGYGWCTMEETSWGDSEHLWVKPGQLFTKGPGTYKIPSFNDVPSDMRVKLMDRANAFAVHSSK 1426
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BLAST of mRNA_H-paniculata_contig40981.10557.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 8.720e-28
Identity = 52/66 (78.79%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 FLQGYGWCTMEETTWGDGDHKWVRSGQLHTRGPGTYKIPSFNDVPLDMRVKLMDR-QNAFAVHSSK 195
            F+QGYGWCTMEE  WGD DHKWVR GQL T+GPG YKIPSFNDVP DMRVKLM    N FAVHSSK
Sbjct: 1244 FVQGYGWCTMEELIWGDADHKWVRPGQLFTKGPGAYKIPSFNDVPGDMRVKLMHSVNNPFAVHSSK 1309
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BLAST of mRNA_H-paniculata_contig40981.10557.1 vs. uniprot
Match: A0A7S3H3T6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3T6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.260e-25
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 FLQGYGWCTMEETTWGDGDHKWVRSGQLHTRGPGTYKIPSFNDVPLDMRVKLMDRQNAFAVHSSK 195
            F+QG+GW TME+  WGD +H WVR GQL TRGPGTYKIPSFNDVP D RV L D  N FAVHSSK
Sbjct:  804 FVQGFGWSTMEDLIWGDKEHPWVRPGQLFTRGPGTYKIPSFNDVPADFRVHLSDTDNRFAVHSSK 868
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BLAST of mRNA_H-paniculata_contig40981.10557.1 vs. uniprot
Match: A0A482SVL4_9ARCH (Ald_Xan_dh_C2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVL4_9ARCH)

HSP 1 Score: 100 bits (249), Expect = 3.140e-24
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 FLQGYGWCTMEETTWGDG-DHKWVRSGQLHTRGPGTYKIPSFNDVPLDMRVKLMDRQNAFAVHSSK 195
            F+QG+GW TMEE  WG+  D  WVR GQL TRGPG YKIP+FNDVPLD RV L D  N FAVHSSK
Sbjct:  197 FMQGFGWSTMEEMIWGEKKDFPWVREGQLFTRGPGAYKIPAFNDVPLDFRVHLADTDNTFAVHSSK 262
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BLAST of mRNA_H-paniculata_contig40981.10557.1 vs. uniprot
Match: A0A7S2RHM1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHM1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.270e-23
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 FLQGYGWCTMEETTWGDGDHKWVRSGQLHTRGPGTYKIPSFNDVPLDMRVKLMDR-QNAFAVHSSK 195
            F+QG GW TMEE  WGD  H WVR GQL TRGPG YKIP+FND P+D+RV+L+D+  N FAVHSSK
Sbjct:  476 FVQGMGWMTMEELAWGDEAHSWVRPGQLFTRGPGAYKIPAFNDTPVDLRVQLLDKASNPFAVHSSK 541
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BLAST of mRNA_H-paniculata_contig40981.10557.1 vs. uniprot
Match: W7TFQ7_9STRA (Xanthine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.660e-22
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 FLQGYGWCTMEETTWGDGDHKWVRSGQLHTRGPGTYKIPSFNDVPLDMRVKLM-DRQNAFAVHSSK 195
            F+QG+GW T EE  WGD DH WV+ G L TRGPG YKIP+FNDVP+D RV L+ D +N  AVHSSK
Sbjct: 1329 FVQGFGWLTTEELIWGDADHPWVKPGSLLTRGPGAYKIPAFNDVPIDFRVTLLKDTKNPVAVHSSK 1394
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BLAST of mRNA_H-paniculata_contig40981.10557.1 vs. uniprot
Match: A0A7S3XDZ6_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XDZ6_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 7.730e-22
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 FLQGYGWCTMEETTWGDGDHKWVRSGQLHTRGPGTYKIPSFNDVPLDMRVKLMD-RQNAFAVHSSK 195
            F+QG GWC +EE  WGD +HKWV+ GQLHTRGPGTYKIP+ ND+P+D RV L+  + N  AV SSK
Sbjct: 1226 FVQGMGWCCIEELVWGDSEHKWVKPGQLHTRGPGTYKIPTANDIPIDFRVSLLTGKPNNRAVASSK 1291
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BLAST of mRNA_H-paniculata_contig40981.10557.1 vs. uniprot
Match: A0A7S1CLS1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLS1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.730e-21
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 FLQGYGWCTMEETTWGDGDHKWVRSGQLHTRGPGTYKIPSFNDVPLDMRVKLM-DRQNAFAVHSSK 195
            F+QG GW T+EE  WGD  HKWVR G + T+GPGTYKIPSFNDVP+D RV L+ D  N  A++SSK
Sbjct:  327 FVQGAGWLTIEEAVWGDSAHKWVRPGMMFTQGPGTYKIPSFNDVPIDFRVALLHDTPNPAAIYSSK 392
[Close]
BLAST of mRNA_H-paniculata_contig40981.10557.1 vs. uniprot
Match: A0A815G111_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815G111_9BILA)

HSP 1 Score: 91.3 bits (225), Expect = 1.220e-20
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 FLQGYGWCTMEETTWGDGDHKWVRSGQLHTRGPGTYKIPSFNDVPLDMRVKLM-DRQNAFAVHSSK 195
            F+QG G  TMEE  WGD  HKW+  G L T+GPGTYKIPSFNDVP+D RV L  D  N FAV SSK
Sbjct:  162 FMQGVGMVTMEELIWGDEQHKWLEPGSLFTQGPGTYKIPSFNDVPIDFRVSLFKDAPNPFAVFSSK 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40981.10557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW60_9PHAE2.160e-3284.62Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ec... [more]
D7G4V3_ECTSI5.670e-3283.08Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
A0A836C8N1_9STRA8.720e-2878.79Xanthine dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
A0A7S3H3T6_9STRA1.260e-2572.31Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482SVL4_9ARCH3.140e-2469.70Ald_Xan_dh_C2 domain-containing protein n=1 Tax=ar... [more]
A0A7S2RHM1_9STRA1.270e-2368.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TFQ7_9STRA5.660e-2265.15Xanthine dehydrogenase n=2 Tax=Monodopsidaceae Tax... [more]
A0A7S3XDZ6_9CHLO7.730e-2263.64Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7S1CLS1_9STRA2.730e-2163.64Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A815G111_9BILA1.220e-2065.15Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40981contigH-paniculata_contig40981:611..805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog2880.D7G4V2
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size195
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930251.0763807-CDS-H-paniculata_contig40981:610..7781622930251.0763807-CDS-H-paniculata_contig40981:610..778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40981 611..778 -
1691481210.4108222-CDS-H-paniculata_contig40981:610..7781691481210.4108222-CDS-H-paniculata_contig40981:610..778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40981 611..778 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930251.0884497-UTR-H-paniculata_contig40981:778..8051622930251.0884497-UTR-H-paniculata_contig40981:778..805Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40981 779..805 -
1691481210.4253485-UTR-H-paniculata_contig40981:778..8051691481210.4253485-UTR-H-paniculata_contig40981:778..805Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40981 779..805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40981.10557.1prot_H-paniculata_contig40981.10557.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40981 611..778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40981.10557.1

>prot_H-paniculata_contig40981.10557.1 ID=prot_H-paniculata_contig40981.10557.1|Name=mRNA_H-paniculata_contig40981.10557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MEETTWGDGDHKWVRSGQLHTRGPGTYKIPSFNDVPLDMRVKLMDRQNAF
AVHSSK
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mRNA from alignment at H-paniculata_contig40981:611..805-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40981.10557.1 ID=mRNA_H-paniculata_contig40981.10557.1|Name=mRNA_H-paniculata_contig40981.10557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig40981:611..805- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTACAGGGGTACGGTTGGTGTACAATGGAGGAGACCACGTGGGGCGA
CGGCGATCACAAGTGGGTCCGATCTGGACAGCTGCATACTCGCGGGCCGG
GGACATACAAGATCCCGTCTTTCAACGATGTCCCGCTTGACATGAGGGTG
AAGCTCATGGACAGGCAGAACGCCTTCGCTGTTCACTCTTCAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig40981:611..805-

>mRNA_H-paniculata_contig40981.10557.1 ID=mRNA_H-paniculata_contig40981.10557.1|Name=mRNA_H-paniculata_contig40981.10557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig40981:611..805- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGACCACGTGGGGCGACGGCGATCACAAGTGGGTCCGATCTGG
ACAGCTGCATACTCGCGGGCCGGGGACATACAAGATCCCGTCTTTCAACG
ATGTCCCGCTTGACATGAGGGTGAAGCTCATGGACAGGCAGAACGCCTTC
GCTGTTCACTCTTCAAAGATGGAGGAGACCACGTGGGGCGACGGCGATCA
CAAGTGGGTCCGATCTGGACAGCTGCATACTCGCGGGCCGGGGACATACA
AGATCCCGTCTTTCAACGATGTCCCGCTTGACATGAGGGTGAAGCTCATG
GACAGGCAGAACGCCTTCGCTGTTCACTCTTCAAAG
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