mRNA_H-paniculata_contig4097.10555.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4097.10555.1
Unique NamemRNA_H-paniculata_contig4097.10555.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4097.10555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4097contigH-paniculata_contig4097:12465..14093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_002330.1
Exons2
Model size1012
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4097.10555.1prot_H-paniculata_contig4097.10555.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4097 13384..13857 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930250.6012235-UTR-H-paniculata_contig4097:12464..125801622930250.6012235-UTR-H-paniculata_contig4097:12464..12580Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4097 12465..12580 -
1691481210.1897273-UTR-H-paniculata_contig4097:12464..125801691481210.1897273-UTR-H-paniculata_contig4097:12464..12580Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4097 12465..12580 -
1622930250.619871-UTR-H-paniculata_contig4097:13197..133831622930250.619871-UTR-H-paniculata_contig4097:13197..13383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4097 13198..13383 -
1691481210.199115-UTR-H-paniculata_contig4097:13197..133831691481210.199115-UTR-H-paniculata_contig4097:13197..13383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4097 13198..13383 -
1622930250.6646605-UTR-H-paniculata_contig4097:13857..140931622930250.6646605-UTR-H-paniculata_contig4097:13857..14093Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4097 13858..14093 -
1691481210.2192533-UTR-H-paniculata_contig4097:13857..140931691481210.2192533-UTR-H-paniculata_contig4097:13857..14093Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4097 13858..14093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930250.6466765-CDS-H-paniculata_contig4097:13383..138571622930250.6466765-CDS-H-paniculata_contig4097:13383..13857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4097 13384..13857 -
1691481210.207255-CDS-H-paniculata_contig4097:13383..138571691481210.207255-CDS-H-paniculata_contig4097:13383..13857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4097 13384..13857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4097.10555.1

>prot_H-paniculata_contig4097.10555.1 ID=prot_H-paniculata_contig4097.10555.1|Name=mRNA_H-paniculata_contig4097.10555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MPHFILAATITGDPWGRSDDRVEISLPADRAFRRVCLKMLTRIVLSSADR
TCAAGGTHPFMMLLETRGGLHPVDRCTGPLRHPFDQACMMQVIYLMIFVY
RRFQWHPRRQYLADVRHAKLLEMCGTRAELTRRIMCMVFQCLASYRLSWN
KSCGTLL*
back to top

mRNA from alignment at H-paniculata_contig4097:12465..14093-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4097.10555.1 ID=mRNA_H-paniculata_contig4097.10555.1|Name=mRNA_H-paniculata_contig4097.10555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1629bp|location=Sequence derived from alignment at H-paniculata_contig4097:12465..14093- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACGGAATGGGTTGATTAGGACGGCTACCGAACTTCTTCTACTAGGTGC
ACGCGCGGACACCGACTACTTTGAGGACAACGAGCTGACTTCCAGACCAA
GCTTGGGGGTCATCGTGGACTTACTACAGGACCATGCGGTTGACGCCTAC
TACGCGGCTTTGCTGAAGGCGCTGACATCCAGCGGCTCTACTACCCTGTT
CACGAACCGCGGTATGTTGGTAACGGAGGCTAAAAAATGCCGCACTTTAT
CCTGGCTGCTACGATAACGGGTGACCCATGGGGGCGCTCCGACGACAGAG
TCGAGATTTCATTGCCAGCGGATCGCGCATTCCGTCGTGTCTGCCTGAAA
ATGCTCACGAGAATAGTGCTCTCGAGCGCCGACCGCACCTGTGCGGCGGG
TGGCACTCACCCGTTTATGATGCTGCTGGAAACCAGAGGGGGGTTGCACC
CGGTGGATAGGTGCACGGGACCTCTGAGGCACCCATTTGATCAGGCCTGC
ATGATGCAAGTTATTTATCTCATGATATTTGTGTATCGGCGTTTTCAGTG
GCACCCCCGTCGGCAGTACTTGGCGGATGTGCGGCACGCGAAGTTGCTCG
AGATGTGCGGCACGCGCGCAGAGCTTACGAGAAGAATAATGTGCATGGTA
TTTCAATGCCTGGCTTCATACAGACTCTCGTGGAACAAAAGCTGTGGCAC
GTTATTGTAGCTTATCGTGGCGACCAAGACGTTTACGACGTTTGGAATGA
TAATCTGAGCAGCCGTCAAAGCGAAGCAAACTTGATAGGAACGTTGATGA
ACAGCACTTGCATCTGTATTTGGCTCTGCAAACAAGAACAGAGACGCATG
CTGTTGCAGCTTTGTCGGCAACGTCGACGACGTATTTTGCAGGTGAGTGG
CCTAGCGATTCAAGCGCCAACGCGGCGAGGGGCGTGGGAGGGGAGGTTGC
TACGACATCTGGTTTATCTGGATTTGTCATGTTTGTACATGTGCCTCCTC
CATGGCTAAGCTGGCGTCACTGTCTAGCGTAAATTTCCGATGAGTCCATT
TTCTCATAGAACAATTCGTTCTATAAATCGGGGTGGTTTGAAACACCCGA
CTCAATGCGTCTTTTGGATTCTAGAAATAGCTCGTTTTTTCAACAATCTC
GTCGCTGTTGTTCATCGAGGGGACAGGTACCCTGCACGGCTCTGTACTGC
GCATATTTGCCGAATCTCATTCCAAGCTTGCCATCTGAGTCTTCGAACGA
GAGGCAGGGTAGGCTTGGAACAGCTATAGCACACCTCAAAGCGAGGGATT
CCTCAACTATACCTTGTTACGTGCATCAAGATTTTGTCGCCCCCTTGCAC
ATATGTTTGTCCAACCGCATACATCAAAGTAGCGGTATTTTTTCTCCCAC
CATGGTGCATCGTCGATGCATCTCTGTCCCCCCCTAGTCGGCACATTCTT
CCTCTCTCGGATTAAAACTGCTCTACCGACCCCATCCTCCCGTCTCGCCC
TTTGGATTTACAGGTAATACAAAGAGCGCCTCACTTGCGTTCGCTGGTGC
TTCACCAGAGCTGCTAACGTTTGTAAGCGACCGTTGTGTGAGAGGTAAAA
AGGAGCGTCTGGCGGCGTGGCTGGCGTCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4097:12465..14093-

>mRNA_H-paniculata_contig4097.10555.1 ID=mRNA_H-paniculata_contig4097.10555.1|Name=mRNA_H-paniculata_contig4097.10555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig4097:12465..14093- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCACTTTATCCTGGCTGCTACGATAACGGGTGACCCATGGGGGCG
CTCCGACGACAGAGTCGAGATTTCATTGCCAGCGGATCGCGCATTCCGTC
GTGTCTGCCTGAAAATGCTCACGAGAATAGTGCTCTCGAGCGCCGACCGC
ACCTGTGCGGCGGGTGGCACTCACCCGTTTATGATGCTGCTGGAAACCAG
AGGGGGGTTGCACCCGGTGGATAGGTGCACGGGACCTCTGAGGCACCCAT
TTGATCAGGCCTGCATGATGCAAGTTATTTATCTCATGATATTTGTGTAT
CGGCGTTTTCAGTGGCACCCCCGTCGGCAGTACTTGGCGGATGTGCGGCA
CGCGAAGTTGCTCGAGATGTGCGGCACGCGCGCAGAGCTTACGAGAAGAA
TAATGTGCATGGTATTTCAATGCCTGGCTTCATACAGACTCTCGTGGAAC
AAAAGCTGTGGCACGTTATTGTAGATGCCGCACTTTATCCTGGCTGCTAC
GATAACGGGTGACCCATGGGGGCGCTCCGACGACAGAGTCGAGATTTCAT
TGCCAGCGGATCGCGCATTCCGTCGTGTCTGCCTGAAAATGCTCACGAGA
ATAGTGCTCTCGAGCGCCGACCGCACCTGTGCGGCGGGTGGCACTCACCC
GTTTATGATGCTGCTGGAAACCAGAGGGGGGTTGCACCCGGTGGATAGGT
GCACGGGACCTCTGAGGCACCCATTTGATCAGGCCTGCATGATGCAAGTT
ATTTATCTCATGATATTTGTGTATCGGCGTTTTCAGTGGCACCCCCGTCG
GCAGTACTTGGCGGATGTGCGGCACGCGAAGTTGCTCGAGATGTGCGGCA
CGCGCGCAGAGCTTACGAGAAGAATAATGTGCATGGTATTTCAATGCCTG
GCTTCATACAGACTCTCGTGGAACAAAAGCTGTGGCACGTTATTGTAG
back to top