mRNA_H-paniculata_contig40957.10552.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40957.10552.1
Unique NamemRNA_H-paniculata_contig40957.10552.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 102 bits (255), Expect = 3.130e-23
Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    7 RSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYSQ----QRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
            RS +  A + +++  EA   AVY  +R PT+   G TP+E W G  PK+DHLR+FGCT Y+     +R+KLD KA   + LGY  ++  YRLY SK   V FSRDV F+E
Sbjct:   63 RSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGYGTETKGYRLYDSKLAKVFFSRDVIFNE 172          
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A1R3HQR7_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HQR7_COCAP)

HSP 1 Score: 102 bits (255), Expect = 3.220e-23
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYSQ----QRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
            M R  +    + +++  EA + AVY L+R+PT+     TPYE W G  P + HL+VFGC  Y+     +R KLD+KA +GVF+GY ++   YR+Y+     V  SRDV+FDE
Sbjct:  406 MARCLLFEKKLPKKFWAEAVNTAVYLLNRLPTKALKNLTPYEGWSGAKPSVTHLKVFGCVCYTWIPNVKRGKLDEKAQIGVFVGYSIEVKGYRIYNPTTNKVYLSRDVKFDE 517          
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE)

HSP 1 Score: 100 bits (250), Expect = 4.070e-23
Identity = 53/112 (47.32%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYS----QQRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
            M R  +  AN+ +R+  EAA  A Y  +R+PT+P    TPY  W    P L H+RVFGC AY+    Q+RRKLDDKA  G+FLGY+  S  YR+Y   NK +  SR V+F+E
Sbjct:  121 MARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLGYDYRSKGYRIYLGDNK-IMISRTVKFNE 230          
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A5C7GPV7_9ROSI (Integrase catalytic domain-containing protein n=3 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7GPV7_9ROSI)

HSP 1 Score: 99.0 bits (245), Expect = 7.020e-22
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYSQ----QRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDEE 327
            M R  M    + + +  EA + AVY L+++PTR   G TP E W G  P   HL+VFG   YS     +R KLDDKA +G+FLGY V+S  YR+++ + K +  SRD++ DE+
Sbjct:  586 MARCLMAEKKLPKNFWAEAVYTAVYLLNKLPTRAVQGKTPIEAWSGVKPSAKHLKVFGSICYSHVADAKRSKLDDKAEMGIFLGYVVNSKGYRVFNLQAKKLIISRDIQVDED 698          
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A6P5RP40_PRUAV (Non-specific serine/threonine protein kinase n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5RP40_PRUAV)

HSP 1 Score: 98.6 bits (244), Expect = 1.010e-21
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYSQQ----RRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDEE 327
            M R  +   N+ + +  EA   AVY L+R P+R  NG  PYE W G  P + HLRVFGC AYS      R+KLD+KA   +F+GY   +  Y+LY+ K + V  SRDV F E+
Sbjct: 1707 MVRCMLKLKNLPKCFWAEAVACAVYILNRAPSRSVNGRIPYEVWSGRKPNIQHLRVFGCIAYSHVPDHIRKKLDEKAEKCIFIGYSTVTKGYKLYNPKTEKVIISRDVTFYEQ 1819          
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A396INR0_MEDTR (Putative RNA-directed DNA polymerase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396INR0_MEDTR)

HSP 1 Score: 96.3 bits (238), Expect = 6.380e-21
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    1 MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAY----SQQRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
            M R  +    + + +  EA + AVY L+R+PTR   G TP E W G  P   HL++FG   Y    + +R KLDDKA +G+FLGY   S  YR+Y+ K K +   RD+  DE
Sbjct:  635 MARCLIAEKQLPKSFWAEAVYTAVYLLNRLPTRAVQGKTPIEAWIGVKPSAKHLKIFGSICYVHVVAAKRSKLDDKAEMGIFLGYVASSKGYRVYNLKTKQIVIRRDIDVDE 746          
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A251UCI2_HELAN (Putative ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UCI2_HELAN)

HSP 1 Score: 94.0 bits (232), Expect = 4.040e-20
Identity = 49/111 (44.14%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    4 TRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYSQ----QRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
            TRS +   NM + +  EA   A+Y L+RVPT+     TP+E   G  P L+HL+VFGCTAY++    Q++KLDD++   V+LG E  S +YRLY      +  SRDV+F E
Sbjct:  160 TRSMLKAMNMPQNFWGEAVRHAIYVLNRVPTKALVNKTPFEALKGRKPNLEHLKVFGCTAYAKVLPLQQKKLDDRSAPMVYLGIEEGSKAYRLYDPAKNKICVSRDVKFME 270          
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A0V1GQ65_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1GQ65_9BILA)

HSP 1 Score: 93.2 bits (230), Expect = 5.080e-20
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 1
Query:    7 RSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAY----SQQRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
            RS +   N+ R    EA H A Y L+R+P R     TPYEKW+G  P ++HLR+FGC AY     Q R K D KA   +F+GY + +  +R++ +    V    DV+F+E
Sbjct:  194 RSMLHARNLPRFLWAEAVHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLRIFGCDAYVHIPDQHRNKFDRKARKVIFVGYGLSNKMFRVFDTNKHRVDEVTDVKFNE 303          
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A0A9YYY8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YYY8_LYGHE)

HSP 1 Score: 87.0 bits (214), Expect = 6.470e-20
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   28 NMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYS----QQRRKLDDKAWLGVFLGYEVDSPSYRLY 273
            +MD+R+  EAA+ AVY ++  PT+     TP+E+WYG+ P L+HLRVFGC AY     ++RRKLD KA   VF+GY   +  YRL+
Sbjct:   30 DMDKRFWAEAANTAVYLMNVSPTKRLKNVTPHERWYGSKPNLEHLRVFGCDAYGHIPDEKRRKLDPKAKPLVFVGYGDCTKGYRLF 115          
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A507DRP7_9FUNG (DNA-directed DNA polymerase n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DRP7_9FUNG)

HSP 1 Score: 92.0 bits (227), Expect = 9.680e-20
Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYSQ---QRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
            M R+ +  A++   +  EA + A Y L+R+P R +   TP+E W G  PKLDHL++ GCTAY      + KL  ++W GV +GY + SP+YR+++    S+  +RDVRFDE
Sbjct:    1 MGRTLLHAAHLTLDFWAEAWNTANYLLNRLPARGYTK-TPFEAWTGIKPKLDHLKLIGCTAYITPVPMKDKLLPRSWTGVLVGYGLSSPTYRIWNPATSSIVETRDVRFDE 110          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A498M2F0_LABRO3.130e-2346.36Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A1R3HQR7_COCAP3.220e-2341.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y2LAF7_ARAVE4.070e-2347.32Retrovirus-related Pol polyprotein from transposon... [more]
A0A5C7GPV7_9ROSI7.020e-2242.48Integrase catalytic domain-containing protein n=3 ... [more]
A0A6P5RP40_PRUAV1.010e-2144.25Non-specific serine/threonine protein kinase n=1 T... [more]
A0A396INR0_MEDTR6.380e-2141.07Putative RNA-directed DNA polymerase n=1 Tax=Medic... [more]
A0A251UCI2_HELAN4.040e-2044.14Putative ribonuclease H-like domain, Reverse trans... [more]
A0A0V1GQ65_9BILA5.080e-2040.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9YYY8_LYGHE6.470e-2048.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A507DRP7_9FUNG9.680e-2041.44DNA-directed DNA polymerase n=1 Tax=Powellomyces h... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40957contigH-paniculata_contig40957:1224..1562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score109.0
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog3641.EOY20321
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs383KH@33090,3GQES@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930250.1992314-CDS-H-paniculata_contig40957:1223..14091622930250.1992314-CDS-H-paniculata_contig40957:1223..1409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40957 1224..1409 +
1691481210.0563931-CDS-H-paniculata_contig40957:1223..14091691481210.0563931-CDS-H-paniculata_contig40957:1223..1409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40957 1224..1409 +
1622930250.2141871-CDS-H-paniculata_contig40957:1421..15621622930250.2141871-CDS-H-paniculata_contig40957:1421..1562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40957 1422..1562 +
1691481210.0654666-CDS-H-paniculata_contig40957:1421..15621691481210.0654666-CDS-H-paniculata_contig40957:1421..1562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40957 1422..1562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40957.10552.1prot_H-paniculata_contig40957.10552.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40957 1224..1562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40957.10552.1

>prot_H-paniculata_contig40957.10552.1 ID=prot_H-paniculata_contig40957.10552.1|Name=mRNA_H-paniculata_contig40957.10552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPK
LDHLRVFGCTAYSQQRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQF
SRDVRFDEE
back to top

mRNA from alignment at H-paniculata_contig40957:1224..1562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40957.10552.1 ID=mRNA_H-paniculata_contig40957.10552.1|Name=mRNA_H-paniculata_contig40957.10552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig40957:1224..1562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCGAAGTAAGATGATCACCGCCAACATGGACCGCAGGTATGGGGT CGAGGCGGCGCACGCGGCTGTGTACTGCTTACATCGCGTCCCGACGCGAC CGCACAACGGAGGGACGCCGTATGAGAAATGGTACGGTACGACACCAAAG CTTGACCACCTTCGTGTCTTCGGCTGCACGGCGTATGTGATGTTCTAGTC GCAGCAGAGACGCAAACTCGATGACAAAGCATGGTTGGGGGTGTTTCTGG GGTACGAGGTAGACAGCCCGAGTTATCGCCTATATAGCTCGAAAAACAAG AGCGTCCAGTTCAGCAGGGACGTAAGATTTGATGAAGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig40957:1224..1562+

>mRNA_H-paniculata_contig40957.10552.1 ID=mRNA_H-paniculata_contig40957.10552.1|Name=mRNA_H-paniculata_contig40957.10552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig40957:1224..1562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCGAAGTAAGATGATCACCGCCAACATGGACCGCAGGTATGGGGT
CGAGGCGGCGCACGCGGCTGTGTACTGCTTACATCGCGTCCCGACGCGAC
CGCACAACGGAGGGACGCCGTATGAGAAATGGTACGGTACGACACCAAAG
CTTGACCACCTTCGTGTCTTCGGCTGCACGGCGTATATGACCCGAAGTAA
GATGATCACCGCCAACATGGACCGCAGGTATGGGGTCGAGGCGGCGCACG
CGGCTGTGTACTGCTTACATCGCGTCCCGACGCGACCGCACAACGGAGGG
ACGCCGTATGAGAAATGGTACGGTACGACACCAAAGCTTGACCACCTTCG
TGTCTTCGGCTGCACGGCGTATTCGCAGCAGAGACGCAAACTCGATGACA
AAGCATGGTTGGGGGTGTTTCTGGGGTACGAGGTAGACAGCCCGAGTTAT
CGCCTATATAGCTCGAAAAACAAGAGCGTCCAGTTCAGCAGGGACGTAAG
ATTTGATGAAGAGTCGCAGCAGAGACGCAAACTCGATGACAAAGCATGGT
TGGGGGTGTTTCTGGGGTACGAGGTAGACAGCCCGAGTTATCGCCTATAT
AGCTCGAAAAACAAGAGCGTCCAGTTCAGCAGGGACGTAAGATTTGATGA
AGAG
back to top