mRNA_H-paniculata_contig40957.10552.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO) HSP 1 Score: 102 bits (255), Expect = 3.130e-23 Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 7 RSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYSQ----QRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
RS + A + +++ EA AVY +R PT+ G TP+E W G PK+DHLR+FGCT Y+ +R+KLD KA + LGY ++ YRLY SK V FSRDV F+E
Sbjct: 63 RSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGYGTETKGYRLYDSKLAKVFFSRDVIFNE 172
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A1R3HQR7_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HQR7_COCAP) HSP 1 Score: 102 bits (255), Expect = 3.220e-23 Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 1
Query: 1 MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYSQ----QRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
M R + + +++ EA + AVY L+R+PT+ TPYE W G P + HL+VFGC Y+ +R KLD+KA +GVF+GY ++ YR+Y+ V SRDV+FDE
Sbjct: 406 MARCLLFEKKLPKKFWAEAVNTAVYLLNRLPTKALKNLTPYEGWSGAKPSVTHLKVFGCVCYTWIPNVKRGKLDEKAQIGVFVGYSIEVKGYRIYNPTTNKVYLSRDVKFDE 517
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE) HSP 1 Score: 100 bits (250), Expect = 4.070e-23 Identity = 53/112 (47.32%), Postives = 69/112 (61.61%), Query Frame = 1
Query: 1 MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYS----QQRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
M R + AN+ +R+ EAA A Y +R+PT+P TPY W P L H+RVFGC AY+ Q+RRKLDDKA G+FLGY+ S YR+Y NK + SR V+F+E
Sbjct: 121 MARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLGYDYRSKGYRIYLGDNK-IMISRTVKFNE 230
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A5C7GPV7_9ROSI (Integrase catalytic domain-containing protein n=3 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7GPV7_9ROSI) HSP 1 Score: 99.0 bits (245), Expect = 7.020e-22 Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 1
Query: 1 MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYSQ----QRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDEE 327
M R M + + + EA + AVY L+++PTR G TP E W G P HL+VFG YS +R KLDDKA +G+FLGY V+S YR+++ + K + SRD++ DE+
Sbjct: 586 MARCLMAEKKLPKNFWAEAVYTAVYLLNKLPTRAVQGKTPIEAWSGVKPSAKHLKVFGSICYSHVADAKRSKLDDKAEMGIFLGYVVNSKGYRVFNLQAKKLIISRDIQVDED 698
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A6P5RP40_PRUAV (Non-specific serine/threonine protein kinase n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5RP40_PRUAV) HSP 1 Score: 98.6 bits (244), Expect = 1.010e-21 Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 1 MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYSQQ----RRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDEE 327
M R + N+ + + EA AVY L+R P+R NG PYE W G P + HLRVFGC AYS R+KLD+KA +F+GY + Y+LY+ K + V SRDV F E+
Sbjct: 1707 MVRCMLKLKNLPKCFWAEAVACAVYILNRAPSRSVNGRIPYEVWSGRKPNIQHLRVFGCIAYSHVPDHIRKKLDEKAEKCIFIGYSTVTKGYKLYNPKTEKVIISRDVTFYEQ 1819
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A396INR0_MEDTR (Putative RNA-directed DNA polymerase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396INR0_MEDTR) HSP 1 Score: 96.3 bits (238), Expect = 6.380e-21 Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 1 MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAY----SQQRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
M R + + + + EA + AVY L+R+PTR G TP E W G P HL++FG Y + +R KLDDKA +G+FLGY S YR+Y+ K K + RD+ DE
Sbjct: 635 MARCLIAEKQLPKSFWAEAVYTAVYLLNRLPTRAVQGKTPIEAWIGVKPSAKHLKIFGSICYVHVVAAKRSKLDDKAEMGIFLGYVASSKGYRVYNLKTKQIVIRRDIDVDE 746
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A251UCI2_HELAN (Putative ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UCI2_HELAN) HSP 1 Score: 94.0 bits (232), Expect = 4.040e-20 Identity = 49/111 (44.14%), Postives = 68/111 (61.26%), Query Frame = 1
Query: 4 TRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYSQ----QRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
TRS + NM + + EA A+Y L+RVPT+ TP+E G P L+HL+VFGCTAY++ Q++KLDD++ V+LG E S +YRLY + SRDV+F E
Sbjct: 160 TRSMLKAMNMPQNFWGEAVRHAIYVLNRVPTKALVNKTPFEALKGRKPNLEHLKVFGCTAYAKVLPLQQKKLDDRSAPMVYLGIEEGSKAYRLYDPAKNKICVSRDVKFME 270
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A0V1GQ65_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1GQ65_9BILA) HSP 1 Score: 93.2 bits (230), Expect = 5.080e-20 Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 1
Query: 7 RSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAY----SQQRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
RS + N+ R EA H A Y L+R+P R TPYEKW+G P ++HLR+FGC AY Q R K D KA +F+GY + + +R++ + V DV+F+E
Sbjct: 194 RSMLHARNLPRFLWAEAVHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLRIFGCDAYVHIPDQHRNKFDRKARKVIFVGYGLSNKMFRVFDTNKHRVDEVTDVKFNE 303
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A0A9YYY8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YYY8_LYGHE) HSP 1 Score: 87.0 bits (214), Expect = 6.470e-20 Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 28 NMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYS----QQRRKLDDKAWLGVFLGYEVDSPSYRLY 273
+MD+R+ EAA+ AVY ++ PT+ TP+E+WYG+ P L+HLRVFGC AY ++RRKLD KA VF+GY + YRL+
Sbjct: 30 DMDKRFWAEAANTAVYLMNVSPTKRLKNVTPHERWYGSKPNLEHLRVFGCDAYGHIPDEKRRKLDPKAKPLVFVGYGDCTKGYRLF 115
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Match: A0A507DRP7_9FUNG (DNA-directed DNA polymerase n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DRP7_9FUNG) HSP 1 Score: 92.0 bits (227), Expect = 9.680e-20 Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 1 MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKLDHLRVFGCTAYSQ---QRRKLDDKAWLGVFLGYEVDSPSYRLYSSKNKSVQFSRDVRFDE 324
M R+ + A++ + EA + A Y L+R+P R + TP+E W G PKLDHL++ GCTAY + KL ++W GV +GY + SP+YR+++ S+ +RDVRFDE
Sbjct: 1 MGRTLLHAAHLTLDFWAEAWNTANYLLNRLPARGYTK-TPFEAWTGIKPKLDHLKLIGCTAYITPVPMKDKLLPRSWTGVLVGYGLSSPTYRIWNPATSSIVETRDVRFDE 110 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40957.10552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig40957.10552.1 >prot_H-paniculata_contig40957.10552.1 ID=prot_H-paniculata_contig40957.10552.1|Name=mRNA_H-paniculata_contig40957.10552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp MTRSKMITANMDRRYGVEAAHAAVYCLHRVPTRPHNGGTPYEKWYGTTPKback to top mRNA from alignment at H-paniculata_contig40957:1224..1562+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig40957.10552.1 ID=mRNA_H-paniculata_contig40957.10552.1|Name=mRNA_H-paniculata_contig40957.10552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig40957:1224..1562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig40957:1224..1562+ >mRNA_H-paniculata_contig40957.10552.1 ID=mRNA_H-paniculata_contig40957.10552.1|Name=mRNA_H-paniculata_contig40957.10552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig40957:1224..1562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |