mRNA_H-paniculata_contig4090.10548.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4090.10548.1
Unique NamemRNA_H-paniculata_contig4090.10548.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4090.10548.1 vs. uniprot
Match: D8LDV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV1_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 4.390e-58
Identity = 110/192 (57.29%), Postives = 122/192 (63.54%), Query Frame = 1 
Query:    1 MPLTHVRRFIVARGGLTPRDAVLLKTLLIVHEGIDWATGCAFYHHYRDEVIPTALTLYASLPQDTLEGVDLEVGHTLPESIFVVTDTIRPSWPRWG----ADSWNPSASSNGSGFDGSRTGNPRLSPSTTVTMVGGWTGYGRR----GGLGGG------FKPGPWLVFYVEREKYILFYLDQASALDQAVRG 534
            MPL+ +R FI   GG TPRDAVLLK+LLIVHEGI WA     Y +YR+E+IPTAL LYASL QD LEGVDLEVGHTLPESIFVVT T RPSWPRWG    A +  P     G+G    R  N    P TT     G TG+GR      G G G      F PGPW+VF V R  Y+ FY DQA+ LDQAV G
Sbjct:    1 MPLSRIRAFIGVDGGPTPRDAVLLKSLLIVHEGIAWAVDRPHYRNYREEIIPTALELYASLAQDVLEGVDLEVGHTLPESIFVVTGTARPSWPRWGGSPSAATATPRLIEGGAG----RGSNDVDGPDTTRNNGSGGTGFGRSPREASGRGRGMTRAREFLPGPWVVFRVARGDYLEFYRDQAAVLDQAVGG 188
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BLAST of mRNA_H-paniculata_contig4090.10548.1 vs. uniprot
Match: A0A6H5KV82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV82_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 5.030e-51
Identity = 107/196 (54.59%), Postives = 124/196 (63.27%), Query Frame = 1 
Query:    1 MPLTHVRRFIVARGGLTPRDAVLLKTLLIVHEGIDWATGCAFYHHYRDEVIPTALTLYASLPQDTLEGVDLEVGHTLPESIFVVTDTIRPSWPRWG----ADSWNPSASSNGSGFDGSRTGNPRLSPSTTVTMVGGWTGYGR-------RGGL---GGGFKPGPWLVFYVEREKYILFYLDQASALDQAVRGLRRE 546
            MPL+ +R FI   GG TPRDAVLLK+LL+VHEGI WA     Y +YR+E+IPTAL LYASL QD LEGVDLEVGHTLPESIFVVT T RPSWPRWG    A +  P     G+G    R  N    P+   +   G TG+GR       RG +      F PGPW+VF+V R  Y+ FY DQA+ LDQAV G   E
Sbjct:  733 MPLSRIRAFIGVDGGPTPRDAVLLKSLLVVHEGIAWAVDRPHYRNYREEIIPTALELYASLAQDVLEGVDLEVGHTLPESIFVVTGTARPSWPRWGGSPSAATATPRLIEGGAG----RGSNDVSDPNIRRSNGSGGTGFGRSPREASDRGCVMMRAREFLPGPWVVFHVARADYLEFYRDQAAVLDQAVGGSASE 924
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4090.10548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDV1_ECTSI4.390e-5857.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV82_9PHAE5.030e-5154.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4090contigH-paniculata_contig4090:4597..6296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_003450.1
Exons3
Model size561
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4090.10548.1prot_H-paniculata_contig4090.10548.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4090 4597..6296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930249.5570588-CDS-H-paniculata_contig4090:4596..47621622930249.5570588-CDS-H-paniculata_contig4090:4596..4762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4090 4597..4762 -
1691481209.7148855-CDS-H-paniculata_contig4090:4596..47621691481209.7148855-CDS-H-paniculata_contig4090:4596..4762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4090 4597..4762 -
1622930249.5733323-CDS-H-paniculata_contig4090:5044..53081622930249.5733323-CDS-H-paniculata_contig4090:5044..5308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4090 5045..5308 -
1691481209.7270238-CDS-H-paniculata_contig4090:5044..53081691481209.7270238-CDS-H-paniculata_contig4090:5044..5308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4090 5045..5308 -
1622930249.5870535-CDS-H-paniculata_contig4090:6165..62961622930249.5870535-CDS-H-paniculata_contig4090:6165..6296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4090 6166..6296 -
1691481209.7354631-CDS-H-paniculata_contig4090:6165..62961691481209.7354631-CDS-H-paniculata_contig4090:6165..6296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4090 6166..6296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4090.10548.1

>prot_H-paniculata_contig4090.10548.1 ID=prot_H-paniculata_contig4090.10548.1|Name=mRNA_H-paniculata_contig4090.10548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MPLTHVRRFIVARGGLTPRDAVLLKTLLIVHEGIDWATGCAFYHHYRDEV
IPTALTLYASLPQDTLEGVDLEVGHTLPESIFVVTDTIRPSWPRWGADSW
NPSASSNGSGFDGSRTGNPRLSPSTTVTMVGGWTGYGRRGGLGGGFKPGP
WLVFYVEREKYILFYLDQASALDQAVRGLRREDLLC*
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mRNA from alignment at H-paniculata_contig4090:4597..6296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4090.10548.1 ID=mRNA_H-paniculata_contig4090.10548.1|Name=mRNA_H-paniculata_contig4090.10548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1700bp|location=Sequence derived from alignment at H-paniculata_contig4090:4597..6296- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCACTCACTCATGTTCGGAGATTCATTGTCGCTCGGGGGGGTCTGAC
CCCTCGCGATGCCGTGCTGCTCAAGACCTTGCTGATTGTGCACGAAGGAA
TTGATTGGGCCACCGGTTGTGCTTTCTACCAGTGAGAAACGAAAAAAAAA
CAACGCTGTGACAGTTTCAGATAAGAGTGCATACTGTCCCCTCCTGTCCG
CTCCGGTCCGTTACGGTCCGTTCCAGTCTGGTCTCATCTGGTCCGGTACT
GTACTGTATTTAACACGTATCCACGATACATTGTATACTGTATAGTGGTT
GTTTGGAAATATCCCAGATTTCTTGTATAGAATGCTGCAGCTGTTAGGTT
TTTGTAAATGGGTATGGAACTCGTGAGAATAAAAGAGACCAGCTCGGAGT
AGACAGAAATCGAAAGATAAATGAGCGAAGGAGATACAACGCTTTGCTTC
ACTTTGCTATTTATGTAGCTTACCGAGCTAAACCCCTAAGTTCTTATCTT
GTTTAACGGATAAAACACGTATATTTCCTAGCTGTAGACTTTCCAGGAGT
CGATGTTCACTCGGCCTTCTCTACAATTTCACATCAAAGAGATATCCTAC
AATAGGGCAGTCACTTTTGAAGCTGCTGCTGAGAGTTGCGACACAAATTT
CTTCACAATACATCATCTCAGCTATATAATTTCTTGCTTCGATCCGTACA
TCGGGCCTTATTCTGGCTATTATGAACAGCCATTTTCTGTCCCAACGAGA
ACGTGAGACACAACCATTCCTTGGAACGACCCTGTTCGGAAAACATGAGG
TAATGTCTATTGCAGAACGAGGTAAAGGAGCAACGCATACTTACCTGCGA
TTTAACTTGCTAGCCTACAACTGAAGTGCGCGTTCCCTGACGATGGGTCA
GTAAATCTTCCATTTTGTCATTAATGTATATCTGAATACACCAAAAATCG
CGTGCCCCCCCTGTTCGCACAAAAAACTATCTAAAAAGCCACTACCGCGA
CGAGGTCATCCCGACAGCCTTGACTCTCTATGCCTCCCTCCCTCAAGACA
CCTTGGAAGGCGTGGATTTGGAAGTGGGACACACACTGCCAGAGAGCATC
TTCGTCGTGACGGACACGATTCGCCCGTCCTGGCCACGATGGGGTGCGGA
TAGCTGGAACCCCAGCGCGAGCAGCAACGGCAGCGGCTTCGACGGCAGCC
GCACCGGCAATCCTCGATTATCTCCAAGCACAACGGTGACAATGGTTGGA
GGGTCTAGACAAGAGATTAGTAACGGACACGATGCAGCAGCCGCTGCTGC
TGCTGCTGCCGCCGCCGCCGCGGCAGCATCAAACGCTGCTGGATTACGCA
TCAACAGTGGAGTACGCGCACCCGCCGGATTTACCGGTGGATACATGGAC
GGATTCGCGCACCCTAGAAGATTTTCTGCCGGCAGGAATCCCAGCGAATC
TAATGGGTTTAACTCTTCTGCAGGTGGAGAGTCTAGCGAAACAACTGCCC
GAAGTAGCGGTAACGAAGATCTCGTAAGGGGGAGGTGGACGGGGTATGGA
AGGCGAGGGGGGTTGGGAGGAGGGTTTAAGCCCGGGCCTTGGTTGGTGTT
CTACGTCGAGCGCGAGAAGTACATACTATTTTACTTGGACCAGGCTTCGG
CTCTCGATCAGGCGGTGCGGGGGCTGCGCAGAGAGGATTTGCTGTGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4090:4597..6296-

>mRNA_H-paniculata_contig4090.10548.1 ID=mRNA_H-paniculata_contig4090.10548.1|Name=mRNA_H-paniculata_contig4090.10548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig4090:4597..6296- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCACTCACTCATGTTCGGAGATTCATTGTCGCTCGGGGGGGTCTGAC
CCCTCGCGATGCCGTGCTGCTCAAGACCTTGCTGATTGTGCACGAAGGAA
TTGATTGGGCCACCGGTTGTGCTTTCTACCAATGCCACTCACTCATGTTC
GGAGATTCATTGTCGCTCGGGGGGGTCTGACCCCTCGCGATGCCGTGCTG
CTCAAGACCTTGCTGATTGTGCACGAAGGAATTGATTGGGCCACCGGTTG
TGCTTTCTACCACCACTACCGCGACGAGGTCATCCCGACAGCCTTGACTC
TCTATGCCTCCCTCCCTCAAGACACCTTGGAAGGCGTGGATTTGGAAGTG
GGACACACACTGCCAGAGAGCATCTTCGTCGTGACGGACACGATTCGCCC
GTCCTGGCCACGATGGGGTGCGGATAGCTGGAACCCCAGCGCGAGCAGCA
ACGGCAGCGGCTTCGACGGCAGCCGCACCGGCAATCCTCGATTATCTCCA
AGCACAACGGTGACAATGGTTGGAGGCCACTACCGCGACGAGGTCATCCC
GACAGCCTTGACTCTCTATGCCTCCCTCCCTCAAGACACCTTGGAAGGCG
TGGATTTGGAAGTGGGACACACACTGCCAGAGAGCATCTTCGTCGTGACG
GACACGATTCGCCCGTCCTGGCCACGATGGGGTGCGGATAGCTGGAACCC
CAGCGCGAGCAGCAACGGCAGCGGCTTCGACGGCAGCCGCACCGGCAATC
CTCGATTATCTCCAAGCACAACGGTGACAATGGTTGGAGGGTGGACGGGG
TATGGAAGGCGAGGGGGGTTGGGAGGAGGGTTTAAGCCCGGGCCTTGGTT
GGTGTTCTACGTCGAGCGCGAGAAGTACATACTATTTTACTTGGACCAGG
CTTCGGCTCTCGATCAGGCGGTGCGGGGGCTGCGCAGAGAGGATTTGCTG
TGTTAAGTGGACGGGGTATGGAAGGCGAGGGGGGTTGGGAGGAGGGTTTA
AGCCCGGGCCTTGGTTGGTGTTCTACGTCGAGCGCGAGAAGTACATACTA
TTTTACTTGGACCAGGCTTCGGCTCTCGATCAGGCGGTGCGGGGGCTGCG
CAGAGAGGATTTGCTGTGTTAA
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