mRNA_H-paniculata_contig40824.10541.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40824.10541.1
Unique NamemRNA_H-paniculata_contig40824.10541.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40824.10541.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 65.1 bits (157), Expect = 9.880e-11
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 LEAQGFSHVEGEDFVETRAPLARMSTLYTVFSRAAEHDSEVEGMHANAAYLNAPVEEELFVKLPP 195
            L AQGFS + G DF +T AP+A+++++  + + AA HD +V  M    AYLNA +EEE+F+K PP
Sbjct: 1027 LVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPP 1091          
BLAST of mRNA_H-paniculata_contig40824.10541.1 vs. uniprot
Match: A0A401GTF6_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GTF6_9APHY)

HSP 1 Score: 63.5 bits (153), Expect = 3.450e-10
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 LEAQGFSHVEGEDFVETRAPLARMSTLYTVFSRAAEHDSEVEGMHANAAYLNAPVEEELFVKLPP 195
            L AQGF+ V G DF +T AP+A+++++  + + AA HD +V  M    AYLNA +EE++F+K PP
Sbjct:  996 LVAQGFTQVPGVDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNAELEEDIFMKQPP 1060          
BLAST of mRNA_H-paniculata_contig40824.10541.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 60.1 bits (144), Expect = 5.730e-9
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 LEAQGFSHVEGEDFVETRAPLARMSTLYTVFSRAAEHDSEVEGMHANAAYLNAPVEEELFVKLPP 195
            L A+GF+ VEG DF ET AP+A+ +++ T+ + AA+ D E+  M   +A+LN  ++EE+++K+PP
Sbjct:  934 LVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPP 998          
BLAST of mRNA_H-paniculata_contig40824.10541.1 vs. uniprot
Match: A0A1P8YYH4_MAIZE (Reverse transcriptase n=1 Tax=Zea mays TaxID=4577 RepID=A0A1P8YYH4_MAIZE)

HSP 1 Score: 60.1 bits (144), Expect = 5.750e-9
Identity = 28/65 (43.08%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 LEAQGFSHVEGEDFVETRAPLARMSTLYTVFSRAAEHDSEVEGMHANAAYLNAPVEEELFVKLPP 195
            L A+G+S VEG DF ET AP+AR+ ++  + + A  HD ++  M   +A+LN P++EE++V+ PP
Sbjct: 1329 LVAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHDFKLYQMDVKSAFLNGPIKEEVYVEQPP 1393          
BLAST of mRNA_H-paniculata_contig40824.10541.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 60.1 bits (144), Expect = 5.760e-9
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 LEAQGFSHVEGEDFVETRAPLARMSTLYTVFSRAAEHDSEVEGMHANAAYLNAPVEEELFVKLPP 195
            L A+GF+ VEG DF ET AP+A+ +++ T+ + AA+ D E+  M   +A+LN  ++EE+++K+PP
Sbjct:  993 LVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPP 1057          
BLAST of mRNA_H-paniculata_contig40824.10541.1 vs. uniprot
Match: A0A8H7NTQ9_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NTQ9_9APHY)

HSP 1 Score: 59.7 bits (143), Expect = 7.830e-9
Identity = 28/65 (43.08%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 LEAQGFSHVEGEDFVETRAPLARMSTLYTVFSRAAEHDSEVEGMHANAAYLNAPVEEELFVKLPP 195
            L A+GF+ VEG DF ET AP+A+ +++ T+ + AA+ D E+  M   +A+LN  +EEE+++  PP
Sbjct:  691 LVAKGFTQVEGIDFTETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLEEEIYMNAPP 755          
BLAST of mRNA_H-paniculata_contig40824.10541.1 vs. uniprot
Match: Q6ATD3_ORYSJ (Putative polyprotein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6ATD3_ORYSJ)

HSP 1 Score: 59.3 bits (142), Expect = 1.070e-8
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 LEAQGFSHVEGEDFVETRAPLARMSTLYTVFSRAAEHDSEVEGMHANAAYLNAPVEEELFVKLPP 195
            L AQGF+ VEG DF ET AP+AR+ ++  + + AA HD  +  M   +A+LN P+ E ++V+ PP
Sbjct: 1182 LVAQGFTQVEGLDFGETFAPVARLESIRILLAYAAHHDFRLFQMDVKSAFLNGPISELVYVEQPP 1246          
BLAST of mRNA_H-paniculata_contig40824.10541.1 vs. uniprot
Match: A0A5S6Q3I8_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q3I8_TRIMR)

HSP 1 Score: 58.9 bits (141), Expect = 1.440e-8
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 LEAQGFSHVEGEDFVETRAPLARMSTLYTVFSRAAEHDSEVEGMHANAAYLNAPVEEELFVKLPP 195
            L A+GFS   GED+ ET AP+ +  T+  + S AA     V  +   AAYLN+P+EEEL+VK PP
Sbjct:   95 LVARGFSQRYGEDYDETFAPVVKHDTVRVLLSLAAAQKLHVRHLDVKAAYLNSPLEEELYVKQPP 159          
BLAST of mRNA_H-paniculata_contig40824.10541.1 vs. uniprot
Match: Q2RB82_ORYSJ (Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2RB82_ORYSJ)

HSP 1 Score: 58.9 bits (141), Expect = 1.470e-8
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 LEAQGFSHVEGEDFVETRAPLARMSTLYTVFSRAAEHDSEVEGMHANAAYLNAPVEEELFVKLPP 195
            L AQGF+ VEG DF ET AP+AR+ ++  + + AA HD  +  M   +A+LN P+ E ++V+ PP
Sbjct:  956 LVAQGFTQVEGLDFGETFAPVARIESIRILLAYAAHHDFRLFHMDVKSAFLNGPISELVYVEQPP 1020          
BLAST of mRNA_H-paniculata_contig40824.10541.1 vs. uniprot
Match: Q8H6I4_MAIZE (Putative gag-pol polyprotein n=1 Tax=Zea mays TaxID=4577 RepID=Q8H6I4_MAIZE)

HSP 1 Score: 58.9 bits (141), Expect = 1.480e-8
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 LEAQGFSHVEGEDFVETRAPLARMSTLYTVFSRAAEHDSEVEGMHANAAYLNAPVEEELFVKLPP 195
            L AQG++ VEG DF ET AP+AR+ ++  + + A  HD ++  M   +A+LN P++E ++V+ PP
Sbjct: 1377 LVAQGYTQVEGLDFGETYAPVARLESIRILIAYATNHDFKLYQMDVKSAFLNGPLQERVYVEQPP 1441          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40824.10541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GQU1_9APHY9.880e-1147.69Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A401GTF6_9APHY3.450e-1046.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A401H317_9APHY5.730e-943.08Retrovirus-related Pol polyprotein from transposon... [more]
A0A1P8YYH4_MAIZE5.750e-943.08Reverse transcriptase n=1 Tax=Zea mays TaxID=4577 ... [more]
A0A401G4V0_9APHY5.760e-943.08Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H7NTQ9_9APHY7.830e-943.08Integrase catalytic domain-containing protein n=1 ... [more]
Q6ATD3_ORYSJ1.070e-844.62Putative polyprotein n=1 Tax=Oryza sativa subsp. j... [more]
A0A5S6Q3I8_TRIMR1.440e-847.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q2RB82_ORYSJ1.470e-844.62Retrotransposon protein, putative, unclassified n=... [more]
Q8H6I4_MAIZE1.480e-841.54Putative gag-pol polyprotein n=1 Tax=Zea mays TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40824contigH-paniculata_contig40824:29..223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930248.6401238-CDS-H-paniculata_contig40824:28..2231622930248.6401238-CDS-H-paniculata_contig40824:28..223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40824 29..223 +
1691481209.4331315-CDS-H-paniculata_contig40824:28..2231691481209.4331315-CDS-H-paniculata_contig40824:28..223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40824 29..223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40824.10541.1prot_H-paniculata_contig40824.10541.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40824 29..223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40824.10541.1

>prot_H-paniculata_contig40824.10541.1 ID=prot_H-paniculata_contig40824.10541.1|Name=mRNA_H-paniculata_contig40824.10541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
LEAQGFSHVEGEDFVETRAPLARMSTLYTVFSRAAEHDSEVEGMHANAAY
LNAPVEEELFVKLPP
back to top

mRNA from alignment at H-paniculata_contig40824:29..223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40824.10541.1 ID=mRNA_H-paniculata_contig40824.10541.1|Name=mRNA_H-paniculata_contig40824.10541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig40824:29..223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGAGGCTCAAGGTTTTTCACACGTGGAGGGTGAAGATTTCGTTGAAAC CAGGGCCCCCTTAGCTCGCATGTCGACATTGTATACTGTTTTTAGCCGGG CCGCCGAACATGATTCCGAAGTAGAAGGCATGCACGCAAATGCGGCGTAT TTGAATGCCCCCGTAGAAGAAGAGCTTTTTGTTAAGCTACCCCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig40824:29..223+

>mRNA_H-paniculata_contig40824.10541.1 ID=mRNA_H-paniculata_contig40824.10541.1|Name=mRNA_H-paniculata_contig40824.10541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig40824:29..223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGAGGCTCAAGGTTTTTCACACGTGGAGGGTGAAGATTTCGTTGAAAC
CAGGGCCCCCTTAGCTCGCATGTCGACATTGTATACTGTTTTTAGCCGGG
CCGCCGAACATGATTCCGAAGTAGAAGGCATGCACGCAAATGCGGCGTAT
TTGAATGCCCCCGTAGAAGAAGAGCTTTTTGTTAAGCTACCCCCCCTAGA
GGCTCAAGGTTTTTCACACGTGGAGGGTGAAGATTTCGTTGAAACCAGGG
CCCCCTTAGCTCGCATGTCGACATTGTATACTGTTTTTAGCCGGGCCGCC
GAACATGATTCCGAAGTAGAAGGCATGCACGCAAATGCGGCGTATTTGAA
TGCCCCCGTAGAAGAAGAGCTTTTTGTTAAGCTACCCCCC
back to top