mRNA_H-paniculata_contig40819.10540.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40819.10540.1
Unique NamemRNA_H-paniculata_contig40819.10540.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40819.10540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40819contigH-paniculata_contig40819:612..1298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size687
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40819.10540.1prot_H-paniculata_contig40819.10540.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40819 794..1168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930248.5722198-UTR-H-paniculata_contig40819:611..7931622930248.5722198-UTR-H-paniculata_contig40819:611..793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40819 612..793 +
1691481209.3949761-UTR-H-paniculata_contig40819:611..7931691481209.3949761-UTR-H-paniculata_contig40819:611..793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40819 612..793 +
1622930248.5945497-UTR-H-paniculata_contig40819:1168..12981622930248.5945497-UTR-H-paniculata_contig40819:1168..1298Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40819 1169..1298 +
1691481209.4194372-UTR-H-paniculata_contig40819:1168..12981691481209.4194372-UTR-H-paniculata_contig40819:1168..1298Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40819 1169..1298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930248.5836234-CDS-H-paniculata_contig40819:793..11681622930248.5836234-CDS-H-paniculata_contig40819:793..1168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40819 794..1168 +
1691481209.407847-CDS-H-paniculata_contig40819:793..11681691481209.407847-CDS-H-paniculata_contig40819:793..1168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40819 794..1168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40819.10540.1

>prot_H-paniculata_contig40819.10540.1 ID=prot_H-paniculata_contig40819.10540.1|Name=mRNA_H-paniculata_contig40819.10540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MTTPDFPGTIMNGSVTRRSPQLEARIICSGTVGQVQLAYISQLCLHHTHW
YMASRVPTAATAAATSGKCLLTKPSHQPQSPAVYQRSLLRQPLSVTPDTL
GDDDPGVLRVTFISSTHIASHLLR*
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mRNA from alignment at H-paniculata_contig40819:612..1298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40819.10540.1 ID=mRNA_H-paniculata_contig40819.10540.1|Name=mRNA_H-paniculata_contig40819.10540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=687bp|location=Sequence derived from alignment at H-paniculata_contig40819:612..1298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATATCGTGAAAGAAAATTTGACTAGTCTTTGCATATCAAGAATCTCTAT
CTCCTCGCTAAGTATGTGAGCTAATGAATTCCACAATATTTCGGTAATTG
TTCCGAGATATTTTGACATCATTAGTGCCGAAAAAACCTCAAGCCACTTG
AATTTAGAAGACGCTGTTACATCACGTCGAGAATGACCACCCCTGATTTT
CCCGGTACTATCATGAACGGCAGCGTGACCCGCAGGTCACCCCAGCTGGA
GGCGAGGATAATATGTAGCGGAACCGTCGGTCAGGTCCAACTCGCGTACA
TCAGCCAACTTTGCCTTCACCACACACATTGGTATATGGCCTCGAGAGTT
CCCACCGCCGCCACTGCTGCTGCAACCAGTGGAAAATGTCTTTTGACAAA
GCCGTCACACCAGCCCCAGAGTCCAGCAGTATATCAACGCTCACTGCTCC
GACAGCCGCTCTCGGTAACTCCAGACACCCTCGGAGATGATGATCCAGGT
GTTCTACGTGTTACTTTTATCTCATCCACCCATATTGCTTCCCACCTCCT
CCGCTGAGCCCGTGATGTGCGGGAATTCAATTGAACTATACCAACCGTGG
ACTTGCAGTCCCGCAGTCGATGCCTCGGGGACTTCCCTTTTGCACTGGCC
CGAAGTATGTTACCCAGCATGCGTTATGAGTTCACCC
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Coding sequence (CDS) from alignment at H-paniculata_contig40819:612..1298+

>mRNA_H-paniculata_contig40819.10540.1 ID=mRNA_H-paniculata_contig40819.10540.1|Name=mRNA_H-paniculata_contig40819.10540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig40819:612..1298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCACCCCTGATTTTCCCGGTACTATCATGAACGGCAGCGTGACCCG
CAGGTCACCCCAGCTGGAGGCGAGGATAATATGTAGCGGAACCGTCGGTC
AGGTCCAACTCGCGTACATCAGCCAACTTTGCCTTCACCACACACATTGG
TATATGGCCTCGAGAGTTCCCACCGCCGCCACTGCTGCTGCAACCAGTGG
AAAATGTCTTTTGACAAAGCCGTCACACCAGCCCCAGAGTCCAGCAGTAT
ATCAACGCTCACTGCTCCGACAGCCGCTCTCGGTAACTCCAGACACCCTC
GGAGATGATGATCCAGGTGTTCTACGTGTTACTTTTATCTCATCCACCCA
TATTGCTTCCCACCTCCTCCGCTGAATGACCACCCCTGATTTTCCCGGTA
CTATCATGAACGGCAGCGTGACCCGCAGGTCACCCCAGCTGGAGGCGAGG
ATAATATGTAGCGGAACCGTCGGTCAGGTCCAACTCGCGTACATCAGCCA
ACTTTGCCTTCACCACACACATTGGTATATGGCCTCGAGAGTTCCCACCG
CCGCCACTGCTGCTGCAACCAGTGGAAAATGTCTTTTGACAAAGCCGTCA
CACCAGCCCCAGAGTCCAGCAGTATATCAACGCTCACTGCTCCGACAGCC
GCTCTCGGTAACTCCAGACACCCTCGGAGATGATGATCCAGGTGTTCTAC
GTGTTACTTTTATCTCATCCACCCATATTGCTTCCCACCTCCTCCGCTGA
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