mRNA_H-paniculata_contig11628.1054.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11628.1054.1
Unique NamemRNA_H-paniculata_contig11628.1054.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11628.1054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11628contigH-paniculata_contig11628:3568..3995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.8977578-CDS-H-paniculata_contig11628:3567..37211622928872.8977578-CDS-H-paniculata_contig11628:3567..3721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11628 3568..3721 -
1691480652.178338-CDS-H-paniculata_contig11628:3567..37211691480652.178338-CDS-H-paniculata_contig11628:3567..3721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11628 3568..3721 -
1622928872.9080946-CDS-H-paniculata_contig11628:3957..39951622928872.9080946-CDS-H-paniculata_contig11628:3957..3995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11628 3958..3995 -
1691480652.1884987-CDS-H-paniculata_contig11628:3957..39951691480652.1884987-CDS-H-paniculata_contig11628:3957..3995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11628 3958..3995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11628.1054.1prot_H-paniculata_contig11628.1054.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11628 3568..3995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11628.1054.1

>prot_H-paniculata_contig11628.1054.1 ID=prot_H-paniculata_contig11628.1054.1|Name=mRNA_H-paniculata_contig11628.1054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
VVTDETGGTLPVRVRTRPAGARCKVAMLDKIDMIPLTGGRQEQLLQTAID
TKRGATTNRSVRF*
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mRNA from alignment at H-paniculata_contig11628:3568..3995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11628.1054.1 ID=mRNA_H-paniculata_contig11628.1054.1|Name=mRNA_H-paniculata_contig11628.1054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=428bp|location=Sequence derived from alignment at H-paniculata_contig11628:3568..3995- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTGACGGACGAGACGGGGGGCACTCTGCCTGTTCGGTGAGCTGCTTG
CAACGGCCGTTCCCCTGTTTCCTTGGTAGGACTGAGCGATCGCGTTATCT
GACTTGGCAGGCGGACAGCTCGGACTCCATCCGTCCCGTAGATAATTCAC
GGTCGTACACGCAGCACCTTCCTATCTGCGCTGTGTTTATGCCTTCCCAA
AAGTCAGCCACGCTCCATTTGCTGCTTGTTTGGTGTTCAACCACGGCCCT
ATCGCTGCTTGTCTGGTGACGTAGTGTACGCACTCGGCCAGCAGGTGCGC
GATGCAAGGTGGCGATGCTGGACAAAATCGACATGATCCCCCTGACAGGA
GGCCGGCAAGAGCAACTCCTGCAAACAGCCATCGATACGAAACGCGGGGC
AACTACCAACAGAAGCGTGCGTTTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig11628:3568..3995-

>mRNA_H-paniculata_contig11628.1054.1 ID=mRNA_H-paniculata_contig11628.1054.1|Name=mRNA_H-paniculata_contig11628.1054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig11628:3568..3995- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTGACGGACGAGACGGGGGGCACTCTGCCTGTTCGGTTGTGACGGAC
GAGACGGGGGGCACTCTGCCTGTTCGTGTACGCACTCGGCCAGCAGGTGC
GCGATGCAAGGTGGCGATGCTGGACAAAATCGACATGATCCCCCTGACAG
GAGGCCGGCAAGAGCAACTCCTGCAAACAGCCATCGATACGAAACGCGGG
GCAACTACCAACAGAAGCGTGCGTTTTTAATGTACGCACTCGGCCAGCAG
GTGCGCGATGCAAGGTGGCGATGCTGGACAAAATCGACATGATCCCCCTG
ACAGGAGGCCGGCAAGAGCAACTCCTGCAAACAGCCATCGATACGAAACG
CGGGGCAACTACCAACAGAAGCGTGCGTTTTTAA
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