mRNA_H-paniculata_contig4073.10522.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4073.10522.1
Unique NamemRNA_H-paniculata_contig4073.10522.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4073.10522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4073contigH-paniculata_contig4073:152..4208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size948
Cds size948
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930246.2131793-CDS-H-paniculata_contig4073:151..2551622930246.2131793-CDS-H-paniculata_contig4073:151..255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4073 152..255 -
1691481208.480213-CDS-H-paniculata_contig4073:151..2551691481208.480213-CDS-H-paniculata_contig4073:151..255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4073 152..255 -
1622930246.2299335-CDS-H-paniculata_contig4073:3364..42081622930246.2299335-CDS-H-paniculata_contig4073:3364..4208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4073 3365..4208 -
1691481208.4897232-CDS-H-paniculata_contig4073:3364..42081691481208.4897232-CDS-H-paniculata_contig4073:3364..4208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4073 3365..4208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4073.10522.1prot_H-paniculata_contig4073.10522.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4073 152..4208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4073.10522.1

>prot_H-paniculata_contig4073.10522.1 ID=prot_H-paniculata_contig4073.10522.1|Name=mRNA_H-paniculata_contig4073.10522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp
RVPAVRAQKVLWEKPTAALAESILPNVEELEFGDAVRDSNGSGLNGVVWP
RILKRLVFGRLFNRPLRGVTWPPLLEELTTGCCFDQAIDADNVQWPRALR
KLTFGFRFDQTIREVKWPETLQQLEFGHCFNRPVRATRWPQSLQKLTFGC
NFDQEVEGTSWPDSLQEIHFGNRFNRRIERIKWPDSLQILGFGEDFNQSV
ENVLWPELLEALSFGHEFDRPLRDAKFPLSLVRLEFGYRFNQAIAGVKWP
AALRHLTFGCLFDQDIDGVVWPSDLLQITFGGAFNRAVDKVVWPSSLQQL
AFGSSFNQEVSEARE*
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mRNA from alignment at H-paniculata_contig4073:152..4208-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4073.10522.1 ID=mRNA_H-paniculata_contig4073.10522.1|Name=mRNA_H-paniculata_contig4073.10522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4057bp|location=Sequence derived from alignment at H-paniculata_contig4073:152..4208- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGTGCCGGCTGTGCGAGCACAGAAGGTGTTATGGGAAAAACCTACGGC
TGCTCTAGCGGAGAGTATATTACCGAACGTGGAAGAGTTGGAATTCGGCG
ACGCCGTGCGCGATTCTAATGGCAGCGGTTTGAATGGCGTGGTATGGCCG
CGGATCCTCAAGCGGTTGGTTTTTGGGAGACTCTTCAATCGGCCGTTGAG
AGGGGTGACATGGCCGCCTCTGCTGGAAGAGTTAACAACTGGTTGTTGCT
TCGACCAGGCCATCGATGCGGATAACGTCCAATGGCCGAGGGCGTTGCGA
AAGCTCACGTTCGGATTTCGCTTCGACCAGACTATCCGAGAGGTGAAGTG
GCCAGAAACCTTGCAGCAGTTGGAATTTGGGCACTGTTTCAATCGACCAG
TTCGCGCCACACGGTGGCCGCAGTCCCTGCAGAAGTTGACGTTCGGCTGC
AACTTCGACCAGGAAGTAGAAGGGACTTCGTGGCCGGACTCACTGCAAGA
GATCCACTTCGGCAATCGGTTTAACCGCCGCATTGAGCGAATAAAGTGGC
CAGATTCCTTGCAGATCCTCGGATTCGGCGAGGATTTCAATCAGTCAGTG
GAGAACGTCCTCTGGCCAGAACTCTTGGAAGCGTTGAGCTTCGGGCACGA
GTTTGACAGACCGCTGCGAGACGCTAAGTTTCCCCTCTCGCTAGTCCGGT
TGGAGTTCGGGTACCGGTTCAACCAGGCGATTGCCGGCGTGAAATGGCCT
GCTGCCCTTCGGCACCTGACGTTCGGATGCCTATTCGACCAAGATATCGA
TGGGGTTGTGTGGCCATCTGACTTGTTGCAGATCACGTTCGGAGGTGAGC
ACTATTTGGACACAAAATCGACGAGTCCACGCGCGAATCGCAACTAGTAT
CCGTTCAGGGGTTTATGTGTGGAGGGATGTGGGTGGCTACTACCGTAACA
CCCGAAGGTATTGAAATCACCACCAGGGTGAAAAAACAATACAAGCGCGG
CTATCTCGAGAACGAAGACATACCATAATCGGAAAAACCTCTCAATCGAT
AGGTAGATCTCCTTAGCAAGATTATTTTCCAACGGCACACTTATTTACTC
GCTGTCAGTAACAGCTAAATAGCTAGCGCCGTAGTTGTCGAGATCATCGA
TTGCGTTTGAAAAATGTTCACGCCCCGGCATTGATATCGATATCTACCTC
CAGTTTCTACGGTATACCTCCGGGGTTTAACGATATATGCTCATTATTAT
TCAATATGGTAAGGGACTTGTGGTGGTGGTTGTGGTGGTCATCCTCGTTT
CGGAAAGCGAAGACTTGAAGCTTTTAAACTCTGTACTCACCAAGAAAAAT
CTTGAAAAGACAGTGTTCATGCGAGCGCAACGAGCAGCGTGATTCACTTA
CCTAAGCCCCCCACTGCAAGCGCAGCCAGTCCATGGGGCCGAGGTCAAGC
ACGAATTACATGGGCGTATAGCCGTAGTCATGGTCTACTACTGGTATATA
TATATATATACGGAACCAAATAAAGCCCTGGACAAACTGCAAGTCTACGC
CTTACAAAAACACAACGGGTAAGGCCACTACAGGCAAAGAACTAGCGCCA
AGTGTTGAAGATTTTAGTGACCGGCTGAAACAATATTGCGAAGTTAGATT
GCAATGCTGCTATTTAAGAGCCAGACGTTTAGTTTTGCGGCGTTTGTTAC
GTTTTCTTTACATACATAATCTATACTCGAACTGTTCGAAAAGAAGCCAC
CGTGGTATAGATCTGTGCCAAAGGAGTCAATCAACGGTCAGGAGGGCGTA
AAAATGGGCGCTTTGTTAGCATGTTTCAGGAACGTGACACTCGCGGGTGC
TTCCCTACCATCCCCTATGTGATCTCCGGCTGATCTTCTGGATAGTGCAA
AATAGAAAGGAGGGCGTAAAACAAACATGTACCCGAGGAGAAAAACAAAT
TATGTGTTCCCCACCCCCACGCGTAGATTCAGGATCTATCTAACAGACAC
CTCCCCCTCCAACCGCTGAACGATCCCAGAGTTTAATTTTGCTGGATCAT
CTGGCGCTAAACGAACACTCTCTCGAGGTTGGTTGGTATCGATGGAAAGC
CAACTTTAGGATTTCATAGATTGATTTGAGCCGTCATCCGGAGTGCCGTA
TCCACCGTTGGTTTTCTCTTTTTTTATGCGGACACGAAATCAAGCTATTT
CCGATCATTTCCGTGTTATCCCCAACGTTTTTTCCCTTGTGCAAAAAATT
ATAAAACCGAGCAACAAAAGGGGTATTTGGGATCAAGTATTTAGGGGGGG
GGGGTAATGGTGCTTGCAGCAGGCAACATACTGTTATAGAAGAAAATTTG
AGATTTAAAGACGAGGTGAAGGTTCGGGGATATGCTCGAGACGTTGATAC
GGCTTTTCACCCAAACCCTTTGGGAATCGGACTTTGTAGAGCTCTAGTGA
CAGAGAAATATGTTTTCCAAATGACCACTCGTGGATGATGACGAATACAT
GGACGCAATGCCTTGATCATCTCTAGGCACTCTGTTAGCGTATCTCAGGT
GTAATTTTACGCCGATTGCCGCCTTATGGTCTCGGATATAAAATGGAGAG
CAGGAACGTTCCTGACGTTCCAGAACCTCGCTCCACTACGCAACGACCAA
TGGAACTTTTTCTCTTTCTCGAACACAACTGGTAAAGATGTGCCCGACCC
AGGATGCCCAGTTCAACTACATCAGAACAAAACCCAAGTGCTTCCTCTGC
ACTATATCGCAAAACTTGCAAGCAACCCGCAGAACCGGCGGTGCCCTCTC
GAGAGCCAGTCTCTCCGGGGAGCGTCTCCTTCTCACAGCAACCAATAAAT
AAGCTCTACCTGCACAGCTGACTTGGGGGATCATATAGGCTCCTACACTC
AGGGTCAAGAGTGGTCAATAGGCATGAAAAACAGCTTATAACAGCGGCTC
ATCAAAAATGGGAACCAACTTTTTCGATGGGAACGAAGTCCCACTAAGTC
CCATTGAATTTCCATGTTTTATTCGAAAATGATGCGACCTGAGGTACCTA
CAGACTGTTCATTTTCCTTAGCCGCATCGTAATTTTAGTTTGCAAGAATT
ATCCTAGTGCGTTGCGGGTGAGGAGAAATAATTTGGACCAGGTATAATGT
AGGGGGGTGGGGATTTCCACGGCTTATCAGTGAATGACTGGCATTGGAAC
ATGACTTTTTACATGACCAAAACCAGGACCGGTTTGCGGTAAGGTTCTGT
AGGTTCTGCCTTAAATGTTTTTGGTACAACGGGTTCGCTGTCGGTTGTGC
CAACTTGTTGCCGGTCGGCGTTCGGTTCTGTCTGATTTCCAGCCGGTCAT
GTCAAAAGCGCTGGCAATTTCGACGGGCCTCCCTCGAGTCAGTTAAGAGT
TCGCCATCATGTTTGAGTCTTTTCGCCGTTCAAATCGTGGCAGAGGGCAA
AGCTTCGAGCACCATTCTGACCCGAACCCTAAACCTTGATTTAACCGTAC
CCCTTACTCCCCGTTCTTCGAGGGTCGAATCGGGCCCTCGTATTCGAGCG
TCAAATATAACCGCACAAACGCTGCGACGTTCCACGGCATGGTAACGACC
TTGGAGCCAGGTTCGCCCCCCCAAGTTCGTCGAGAGGTTTACCGAGCTGT
AGAACGAATTGAATGAAACCAAGTACCGACACAATCATCGTGCAATTTTT
CGAACCTTTGACAGGCGGGTGCTAAATTAAACATTGCTGCCGCAAAACGT
GCTGAAGAACAGAAAAAAAAGAAGAAAGAGAAAACAGACGGCAGAGTTGA
CGTAGTCGAGATGTTTTGGGTAGCCACATCTCGGGAGAAGGGGAGGGGGG
GCGGGGGGGGTCCCAAAAGCGATCTTCGTTTATCGCAGAACGGCTAACGT
GCAGGTTATCTTTCTGTTGCTTCGTCGCCGAATGAAACCAAAATCTAAAA
TAGGAGCTTTTAACCGTGCAGTGGATAAGGTCGTCTGGCCAAGCTCGCTG
CAGCAGCTCGCATTCGGATCGAGTTTCAACCAAGAGGTGAGTGAGGCGCG
CGAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4073:152..4208-

>mRNA_H-paniculata_contig4073.10522.1 ID=mRNA_H-paniculata_contig4073.10522.1|Name=mRNA_H-paniculata_contig4073.10522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig4073:152..4208- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGTGCCGGCTGTGCGAGCACAGAAGGTGTTATGGGAAAAACCTACGGC
TGCTCTAGCGGAGAGTATATTACCGAACGTGGAAGAGTTGGAATTCGGCG
ACGCCGTGCGCGATTCTAATGGCAGCGGTTTGAATGGCGTGGTATGGCCG
CGGATCCTCAAGCGGTTGGTTTTTGGGAGACTCTTCAATCGGCCGTTGAG
AGGGGTGACATGGCCGCCTCTGCTGGAAGAGTTAACAACTGGTTGTTGCT
TCGACCAGGCCATCGATGCGGATAACGTCCAATGGCCGAGGGCGTTGCGA
AAGCTCACGTTCGGATTTCGCTTCGACCAGACTATCCGAGAGGTGAAGTG
GCCAGAAACCTTGCAGCAGTTGGAATTTGGGCACTGTTTCAATCGACCAG
TTCGCGCCACACGGTGGCCGCAGTCCCTGCAGAAGTTGACGTTCGGCTGC
AACTTCGACCAGGAAGTAGAAGGGACTTCGTGGCCGGACTCACTGCAAGA
GATCCACTTCGGCAATCGGTTTAACCGCCGCATTGAGCGAATAAAGTGGC
CAGATTCCTTGCAGATCCTCGGATTCGGCGAGGATTTCAATCAGTCAGTG
GAGAACGTCCTCTGGCCAGAACTCTTGGAAGCGTTGAGCTTCGGGCACGA
GTTTGACAGACCGCTGCGAGACGCTAAGTTTCCCCTCTCGCTAGTCCGGT
TGGAGTTCGGGTACCGGTTCAACCAGGCGATTGCCGGCGTGAAATGGCCT
GCTGCCCTTCGGCACCTGACGTTCGGATGCCTATTCGACCAAGATATCGA
TGGGGTTGTGTGGCCATCTGACTTGTTGCAGATCACGTTCGGAGCGAGTG
CCGGCTGTGCGAGCACAGAAGGTGTTATGGGAAAAACCTACGGCTGCTCT
AGCGGAGAGTATATTACCGAACGTGGAAGAGTTGGAATTCGGCGACGCCG
TGCGCGATTCTAATGGCAGCGGTTTGAATGGCGTGGTATGGCCGCGGATC
CTCAAGCGGTTGGTTTTTGGGAGACTCTTCAATCGGCCGTTGAGAGGGGT
GACATGGCCGCCTCTGCTGGAAGAGTTAACAACTGGTTGTTGCTTCGACC
AGGCCATCGATGCGGATAACGTCCAATGGCCGAGGGCGTTGCGAAAGCTC
ACGTTCGGATTTCGCTTCGACCAGACTATCCGAGAGGTGAAGTGGCCAGA
AACCTTGCAGCAGTTGGAATTTGGGCACTGTTTCAATCGACCAGTTCGCG
CCACACGGTGGCCGCAGTCCCTGCAGAAGTTGACGTTCGGCTGCAACTTC
GACCAGGAAGTAGAAGGGACTTCGTGGCCGGACTCACTGCAAGAGATCCA
CTTCGGCAATCGGTTTAACCGCCGCATTGAGCGAATAAAGTGGCCAGATT
CCTTGCAGATCCTCGGATTCGGCGAGGATTTCAATCAGTCAGTGGAGAAC
GTCCTCTGGCCAGAACTCTTGGAAGCGTTGAGCTTCGGGCACGAGTTTGA
CAGACCGCTGCGAGACGCTAAGTTTCCCCTCTCGCTAGTCCGGTTGGAGT
TCGGGTACCGGTTCAACCAGGCGATTGCCGGCGTGAAATGGCCTGCTGCC
CTTCGGCACCTGACGTTCGGATGCCTATTCGACCAAGATATCGATGGGGT
TGTGTGGCCATCTGACTTGTTGCAGATCACGTTCGGAGGAGCTTTTAACC
GTGCAGTGGATAAGGTCGTCTGGCCAAGCTCGCTGCAGCAGCTCGCATTC
GGATCGAGTTTCAACCAAGAGGTGAGTGAGGCGCGCGAATAGGAGCTTTT
AACCGTGCAGTGGATAAGGTCGTCTGGCCAAGCTCGCTGCAGCAGCTCGC
ATTCGGATCGAGTTTCAACCAAGAGGTGAGTGAGGCGCGCGAATAG
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