mRNA_H-paniculata_contig4070.10517.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4070.10517.1
Unique NamemRNA_H-paniculata_contig4070.10517.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4070.10517.1 vs. uniprot
Match: D7FKV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKV4_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 4.300e-89
Identity = 130/183 (71.04%), Postives = 150/183 (81.97%), Query Frame = 3 
Query:  456 NSPFSLAPTRWLISMDIGREKGTWMPQSWGISGRRLEVDLSVQFLPDGEMAVEVVSPFIDMTVGPGKWTVGPAEGSSRRRTNKSSGSLRVIADTCRFWVETNGFARGDVSIPPGKIYFAVPAWGCRLSRKGLVTVRQRRWIVREESRILGVFGTEIIETDANGQAQPGVPRPRLPPFASGYED 1004
            +SPFSLAP+RWL+ MDIGREKGTWMPQSWG SGRR+EVDL ++FLP G+M   V SPF+DMTV PGKW+VG A+G  RRR   S GSL   +DTCRFWVET+GF RGDV+IP G+IYFAVPAWG +LSRKGLVTVRQRRW+VREESRILGVFGTE++  DA G+  P  PRPR PPF  G+ D
Sbjct:    3 SSPFSLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLLEFLPGGDMKAVVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSL--TSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELLIPDAEGRLPPRTPRPRTPPFPDGFRD 183
[Close]
BLAST of mRNA_H-paniculata_contig4070.10517.1 vs. uniprot
Match: A0A835Z9I2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9I2_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.890e-42
Identity = 97/211 (45.97%), Postives = 126/211 (59.72%), Query Frame = 3 
Query:  312 AFEHAAKLRREIAELELDLSKGKLDIGEEN---VGVANASNPSPQTESEPANSPFSLAPTRWLISMDIGREKGTWMPQSWGISGRRLEVDLSVQFLPDGEMA-VEVVSPFIDMTVGPGKWTVGPAEGSSRRRTNKSSGSLRVIADTCRFWVETNGFARGDVSIPPGKIYFAVPAWGCRLSR-KGLVTVRQRRWIVREESRILGVFGTEIIE 929
            A + AA+LR E   LE D S   + +  E    +  A  +   P +  +  +    L  TR+++S DIGREKGTWMP  WG SG RL VD+ V+F P G  A V + SPF+   V    W+V  A G+         GSL+    T RF ++T+G ARGDVSIP G IY +VPAWG RLSR +G+VTVRQ+RW +REESRILGVF  + +E
Sbjct:   42 ALQEAARLRAEAEALE-DRSPEAIALRAEQEAVIAAAGRARSEPVSRGDGGSLKEDLVGTRYVLSFDIGREKGTWMPPQWGASGARLNVDVLVEFGPSGTFAEVALKSPFVATDVAGIAWSVEGARGT---------GSLQQ--STLRFSLQTSGAARGDVSIPAGPIYCSVPAWGARLSRSRGMVTVRQKRWGIREESRILGVFSAQRVE 240
[Close]
BLAST of mRNA_H-paniculata_contig4070.10517.1 vs. uniprot
Match: Q01BW4_OSTTA (Unnamed product n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01BW4_OSTTA)

HSP 1 Score: 115 bits (289), Expect = 1.910e-25
Identity = 63/162 (38.89%), Postives = 88/162 (54.32%), Query Frame = 3 
Query:  456 NSPFSLAPTRWLISMDIGREKGTWMPQSWGISGRRLEVDLSVQFLPDGEMAVEVVSPFIDMTVGPGKWTVGPAEGSSRRRTNKSSGSLRVIADTCRFWVETNGFARGDVSIPPGKIYFAVPAWGCRLSR-KGLVTVRQRRWIVREESRILGVFGTEIIETDA 938
            ++P +L  TRW IS D+GRE+GTWMP +WG SG RL V ++++F P+G +   V   F   T+G G W+V                      DT RF +    ++RGD+     K+YF   AWG R+S  KG + V QRR+ +R E R +G F  E +E DA
Sbjct:  186 STPEALVGTRWRISADVGRERGTWMPPNWGASGVRLLVPVAIEFKPNGVVEPIVTGAFTPTTLGAGTWSVD--------------------GDTLRFNLTMTKWSRGDIGFEDEKLYFKTLAWGDRVSSSKGRLLVNQRRFFIRREWRSVGTFKAEPVEKDA 327
[Close]
BLAST of mRNA_H-paniculata_contig4070.10517.1 vs. uniprot
Match: C1FF14_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FF14_MICCC)

HSP 1 Score: 106 bits (264), Expect = 1.360e-21
Identity = 54/150 (36.00%), Postives = 83/150 (55.33%), Query Frame = 3 
Query:  471 LAPTRWLISMDIGREKGTWMPQSWGISGRRLEVDLSVQFLPDGEMAVEVVSPFIDMTVGPGKWTVGPAEGSSRRRTNKSSGSLRVIADTCRFWVETNGFARGDVSIPPGKIYFAVPAWGCRLSRKGLVTVRQRRWIVREESRILGVFGTE 920
            LA TRW +++DIGRE+GTWMP  WG SG R+ + ++V+   +G +    +  F  MTV  GKW                    R+  D  +F V+T+G A+GDV++P   ++F   AWG  ++ +G + + Q R+  R E R++GVF  E
Sbjct:  239 LAGTRWRLTLDIGRERGTWMPPEWGASGFRVILPMAVELGANGVVTPIAIGGFAPMTVSAGKW--------------------RLEGDALKFDVKTSGMAKGDVTLPEDSLHFRTAAWGGTMASRGNLMLLQTRFGFRREWRMVGVFKAE 368
[Close]
BLAST of mRNA_H-paniculata_contig4070.10517.1 vs. uniprot
Match: A0A7S0NI69_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI69_MICPS)

HSP 1 Score: 104 bits (259), Expect = 7.800e-21
Identity = 54/150 (36.00%), Postives = 82/150 (54.67%), Query Frame = 3 
Query:  471 LAPTRWLISMDIGREKGTWMPQSWGISGRRLEVDLSVQFLPDGEMAVEVVSPFIDMTVGPGKWTVGPAEGSSRRRTNKSSGSLRVIADTCRFWVETNGFARGDVSIPPGKIYFAVPAWGCRLSRKGLVTVRQRRWIVREESRILGVFGTE 920
            L  TRW +++DIGRE+GTWMP  WG SG R+ + ++V+   +G +    V  F  MTV  GKW                    R+  D  +F V+T+G A+GDV++P   ++F   AWG  ++ +G + + Q R+  R E R++GVF  E
Sbjct:  275 LVGTRWRLTLDIGRERGTWMPPEWGASGFRVILPVAVELGANGVVTPLAVGGFAPMTVSVGKW--------------------RLEGDALKFDVKTSGMAKGDVTLPEDSLHFRTAAWGGTMASRGNLMLLQTRFGFRREWRMVGVFKAE 404
[Close]
BLAST of mRNA_H-paniculata_contig4070.10517.1 vs. uniprot
Match: A0A7S3BGE8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BGE8_9VIRI)

HSP 1 Score: 100 bits (249), Expect = 9.300e-21
Identity = 60/164 (36.59%), Postives = 85/164 (51.83%), Query Frame = 3 
Query:  471 LAPTRWLISMDIGREKGTWMPQSWGISGRRLEVDLSVQFLPDGEMAVEVVSPFIDMTVGPGKWTVGPAEGSSRRRTNKSSGSLRVIADTCRF-WVETNGFARGDVSIPPG-KIYFAVPAWGCRLSRKGLVTVRQRRWIVREESRILGVFGTEIIETDANGQAQP 956
            L  TR  +S+DIGREK TWM  SWG SGRR+ V   V+ +  G    + V  F  + +  G W+                    +  DT RF  V  +G  R D+ +PPG ++ F   AWG  +  KG + VR+RRW++R+E R +GVF  E  + D++G A P
Sbjct:   72 LVGTRMRLSLDIGREKFTWMEPSWGRSGRRITVGCVVELMEGGVARPKAVGEFSRLLLEDGTWS--------------------LAGDTLRFNIVMASGLDRVDIFLPPGERLCFKCNAWGRTVGSKGTLLVRRRRWLIRQEWRTVGVFSVETAD-DSDGLAPP 214
[Close]
BLAST of mRNA_H-paniculata_contig4070.10517.1 vs. uniprot
Match: A0A7S4CHB2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CHB2_9EUGL)

HSP 1 Score: 98.2 bits (243), Expect = 1.310e-20
Identity = 57/171 (33.33%), Postives = 85/171 (49.71%), Query Frame = 3 
Query:  471 LAPTRWLISMDIGREKGTWMPQSWGISGRRLEVDLSVQFLPDGEMAVEVVSPFIDMTVGPGKWTVGPAEGSSRRRTNKSSGSLRVIADTCRFWVETNGFARGDVSIPPGKIYFAVPAWGCRL--SRKGLVTVRQRRWIVREESRILGVFGTEIIETDANGQAQPGVPRPRL 977
            L  T W  ++DIGRE+ TWM  +W  SGRRLE+ L ++   +G      V  +    V  G+W +               G+LR+        ++T G +RGD+++P G +    P  G  L    KG+VT+ QRRW VR E RI+G F  E +E +  G+    +P  R+
Sbjct:   10 LPGTVWRFTLDIGRERNTWMDPTWAASGRRLEIPLLIRLDAEGRAVPLAVGAYARFIVSDGQWWL-------------DEGTLRLR-------LQTEGLSRGDITLPSGGLDLCTPVLGPALLSKNKGMVTILQRRWWVRLERRIVGTFRAEEVEMEG-GEEPKALPSVRI 159
[Close]
BLAST of mRNA_H-paniculata_contig4070.10517.1 vs. uniprot
Match: R1D3K6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D3K6_EMIHU)

HSP 1 Score: 98.2 bits (243), Expect = 3.320e-20
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 3 
Query:  471 LAPTRWLISMDIGREKGTWMPQSWGISGRRLEVDLSVQFLPDGEMAVEVVSPFIDMTV---GPGKWTVGPAEGSSRRRTNKSSGSLRVIADTCRFWVETNGFARGDVSIPPGKIYFAVPAWGCRLSRKGLVTV 860
            L+ TRW +S+D+G E+GTWMP +WG SG R    + V+F  DGE+ +    P+  +TV   G G+WT    + + R +                FW+   G AR DV +  G+++F+ PAWG +LSR+G  T+
Sbjct:   45 LSGTRWTLSLDVGAERGTWMPPTWGRSGARATPRVRVEFAEDGELRILETGPYDRVTVSWAGAGRWT----QPAGREKAE--------------FWLPHTGLARDDVVLEAGRLHFSAPAWGAQLSRRGGTTI 159
[Close]
BLAST of mRNA_H-paniculata_contig4070.10517.1 vs. uniprot
Match: C1MGG1_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MGG1_MICPC)

HSP 1 Score: 98.2 bits (243), Expect = 3.200e-19
Identity = 52/160 (32.50%), Postives = 82/160 (51.25%), Query Frame = 3 
Query:  471 LAPTRWLISMDIGREKGTWMPQSWGISGRRLEVDLSVQFLPDGEMAVEVVSPFIDMTVGPGKWTVGPAEGSSRRRTNKSSGSLRVIADTCRFWV-ETNGFARGDVSIPPGK-IYFAVPAWGCRLSRKGLVTVRQRRWIVREESRILGVFGTEIIETDANG 944
            L  TRW +++D+GRE+GTWMP SW  SG R+   ++++    G   V     F+ M +  G+W                    R+  D  +F V  T G  +GDV++P  + ++F   AWG  +S +G + +RQ RW  R+E R++GVF  E +    +G
Sbjct:  162 LIGTRWRLTLDVGRERGTWMPPSWAASGVRVIAPIAIELAEGGVTRVVATGAFLPMKLSEGRW--------------------RLEGDALKFDVLMTTGMEKGDVTLPANESLHFRASAWGGAVSSRGTLLLRQTRWGFRKEWRMVGVFKAEKLSDGEDG 301
[Close]
BLAST of mRNA_H-paniculata_contig4070.10517.1 vs. uniprot
Match: R1BHI6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BHI6_EMIHU)

HSP 1 Score: 91.3 bits (225), Expect = 4.140e-18
Identity = 46/128 (35.94%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  471 LAPTRWLISMDIGREKGTWMPQSWGISGRRLEVDLSVQFLPDGEMAVEVVSPFIDMTV---GPGKWTVGPAEGSSRRRTNKSSGSLRVIADTCRFWVETNGFARGDVSIPPGKIYFAVPAWGCRLSRK 845
            L+ TRW +S+D+G E+GTWMP +WG SG R    + V+F  DGE+ +    P+  +TV   G G+WT    + + R +                FW+   G AR DV +  G+++F+ PAWG +L+ K
Sbjct:   44 LSGTRWTLSLDVGAERGTWMPPTWGRSGSRATPRVRVEFAEDGELRILETGPYDRVTVSWAGAGRWT----QPAGREKAE--------------FWLPHTGLARDDVVLEAGRLHFSAPAWGAQLTIK 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4070.10517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FKV4_ECTSI4.300e-8971.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9I2_9STRA2.890e-4245.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
Q01BW4_OSTTA1.910e-2538.89Unnamed product n=2 Tax=Ostreococcus tauri TaxID=7... [more]
C1FF14_MICCC1.360e-2136.00Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S0NI69_MICPS7.800e-2136.00Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S3BGE8_9VIRI9.300e-2136.59Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A7S4CHB2_9EUGL1.310e-2033.33Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
R1D3K6_EMIHU3.320e-2036.84Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
C1MGG1_MICPC3.200e-1932.50Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
R1BHI6_EMIHU4.140e-1835.94Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4070contigH-paniculata_contig4070:5961..15630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score279.3
Seed ortholog evalue2.1e-72
Seed eggNOG ortholog2880.D7FKV4
Hectar predicted targeting categorysignal peptide
EggNOG OGs2DZV4@1,2S7BP@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_001500.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1250
Cds size873
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930245.5817173-UTR-H-paniculata_contig4070:5960..60971622930245.5817173-UTR-H-paniculata_contig4070:5960..6097Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4070 5961..6097 +
1691481208.2622502-UTR-H-paniculata_contig4070:5960..60971691481208.2622502-UTR-H-paniculata_contig4070:5960..6097Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4070 5961..6097 +
1622930245.685473-UTR-H-paniculata_contig4070:15390..156301622930245.685473-UTR-H-paniculata_contig4070:15390..15630Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4070 15391..15630 +
1691481208.3231544-UTR-H-paniculata_contig4070:15390..156301691481208.3231544-UTR-H-paniculata_contig4070:15390..15630Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4070 15391..15630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930245.5969715-CDS-H-paniculata_contig4070:6097..63351622930245.5969715-CDS-H-paniculata_contig4070:6097..6335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 6098..6335 +
1691481208.2755973-CDS-H-paniculata_contig4070:6097..63351691481208.2755973-CDS-H-paniculata_contig4070:6097..6335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 6098..6335 +
1622930245.6102877-CDS-H-paniculata_contig4070:13981..141621622930245.6102877-CDS-H-paniculata_contig4070:13981..14162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 13982..14162 +
1691481208.2841508-CDS-H-paniculata_contig4070:13981..141621691481208.2841508-CDS-H-paniculata_contig4070:13981..14162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 13982..14162 +
1622930245.6286485-CDS-H-paniculata_contig4070:14428..145831622930245.6286485-CDS-H-paniculata_contig4070:14428..14583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 14429..14583 +
1691481208.2929409-CDS-H-paniculata_contig4070:14428..145831691481208.2929409-CDS-H-paniculata_contig4070:14428..14583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 14429..14583 +
1622930245.6478083-CDS-H-paniculata_contig4070:14887..150471622930245.6478083-CDS-H-paniculata_contig4070:14887..15047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 14888..15047 +
1691481208.303389-CDS-H-paniculata_contig4070:14887..150471691481208.303389-CDS-H-paniculata_contig4070:14887..15047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 14888..15047 +
1622930245.6649506-CDS-H-paniculata_contig4070:15251..153901622930245.6649506-CDS-H-paniculata_contig4070:15251..15390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 15252..15390 +
1691481208.3134415-CDS-H-paniculata_contig4070:15251..153901691481208.3134415-CDS-H-paniculata_contig4070:15251..15390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 15252..15390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4070.10517.1prot_H-paniculata_contig4070.10517.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4070 6098..15390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4070.10517.1

>prot_H-paniculata_contig4070.10517.1 ID=prot_H-paniculata_contig4070.10517.1|Name=mRNA_H-paniculata_contig4070.10517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=291bp
MLRSVKTIHMIGVLAVMCETRCCAFTPSLPSISRQSLRQRRLECEQDPEI
NGRDDAGRAFEHAAKLRREIAELELDLSKGKLDIGEENVGVANASNPSPQ
TESEPANSPFSLAPTRWLISMDIGREKGTWMPQSWGISGRRLEVDLSVQF
LPDGEMAVEVVSPFIDMTVGPGKWTVGPAEGSSRRRTNKSSGSLRVIADT
CRFWVETNGFARGDVSIPPGKIYFAVPAWGCRLSRKGLVTVRQRRWIVRE
ESRILGVFGTEIIETDANGQAQPGVPRPRLPPFASGYEDR*
back to top

mRNA from alignment at H-paniculata_contig4070:5961..15630+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4070.10517.1 ID=mRNA_H-paniculata_contig4070.10517.1|Name=mRNA_H-paniculata_contig4070.10517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9670bp|location=Sequence derived from alignment at H-paniculata_contig4070:5961..15630+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAAGACACAGCGGGAGTATGAGCACAAACTTTGTAGCTGAAACTCTGG
TCGTTCGTTCGTCATTTGGCCGCGAAGACCAAGACGAGCTATTACATCCA
ATAGTTACCGCATAGCACGGCTACGTAGAGTCTCGCAATGTTGAGGTCCG
TGAAGACGATCCATATGATAGGAGTGCTGGCGGTCATGTGTGAGACGCGT
TGCTGTGCGTTCACTCCGAGCTTGCCCAGTATTTCAAGACAATCATTGAG
ACAGCGGAGGCTGGAGTGCGAGCAGGATCCTGAAATAAATGGTCGGGACG
ATGCCGGAAGAGCATTTGAGCACGCCGCAAAGCTGAGGCGGGAGATCGCG
GAGTTAGAGCTTGATCTCAGCAAAGGTGAATCCTTCATGGTTGTGTCATT
CAGGGCCTAAAGCCGGTTTCGCCCTTTCACTGACTGGGAGTTGTTTTTCA
ACAGCCGTTCAACTGTGAGTATGGTGTTGTAGTGCCCCATTGTACTCGGC
TCTCTGTGTATACTGACTGTTGTTCTCGGCATCTGTTGCCTAAAAGTGAA
CGTCAGGTATGTACGCAATAGTTAACACGCAACTTTGTCATTTCATCCAG
TTCGCGGTCTGTTCTACCTGTCGGCGGTTGGTTCTGTCACAAAAAATATC
TGCTTTCGAGTTGCCGTCTCTTCTGTTGGATTTACACCGGTTGGTGGTCG
CTTGTGTTCAAATTTTCAGTTGTGCAATGGGTTATCAAGGGTTTTCGACC
ACGGCCCGTGAAATACAAGAATATGCCGTTAGCCCCTGCACCCGGGTGCC
TGCCTGCATTGCGACAAACTTTCGATGCGCGATATCTGTTAATCCCGAGT
CGTGAAAAGGGCGTGAGGTGTTTTTCGGCCGGGGGGTTCCCGCATGTTGA
CGGACGCGATCACATACTTTGCTGGGATAAGATCAGACCCGTATATCGAC
AAGTGAGAAATAGTTCAGCAAGATTGCCATATGTTTGATAATACTACTTA
ATATGAATGCAGAAATTTAGTATGTCACATACCGTCACAAGATGCGAAAG
GGCATCAACTTTTTGACAACAGAGGGAGACAGCTGTTCGGCATCGTAGCG
AATGATAGCCGCTGCGTGTTTGGCGTCCTGCTATGAGTGACTGCACCCAG
AGCCGACAGGCACAGTAACAGGCGGCCCACGACAGACAGTGTTGCCTGTC
GGAACATGACAACATCATGACTGGTATATATCGTAATTAGTAAGTGATTA
GACGTTGGTGTTCCCTGAACAAAGTTGTTTCATCGTGTCAGCTTTTTTTT
TCAGGTGTCATACATTTGTTATTATCCAGTGTTACGCGCCTTGCTGAATT
TTTTTTTGTCTTGCAGCAAATAGAGCGCTTGCCATAGAAGTATAAGTTAC
TAAATATTTTAGGTAATTTTGCACTGCAGCGTGATCGCTAACAGGCTGAA
TTTGAGCCGTCTTCTAACGTGAGGGCCCAGGTCTTCTCAGGTGACTACGA
TAGCGCCGCAGCTCATCACCCCAGCGAGACGTGCACAACATCTGGGAGTG
GTCGCTAGGCAACCGAAAAGTAGACACAAAATAAGCTATAAAATGAATAT
CTGATCGAAAACTTCAACCACTTTGTATTCAAGACGGGCAATTGTGCCGC
GGCCCCGTGAGGTGATTAGTCGCAAGGATGTCTCAGTCATACGTCAGCAG
ACCTGGGACATATGCACCTTCAAGGAGTTTGAACTGTACTGGTAAGCGAT
GCGCTGCCACTGCAGGACTACCAAAAAAATGTTGTAATCTATATTTGTTT
CGCAACACACGCTAATAATAACAGTGGGGCTGCGTATCGGTACCGATACA
AAGACGATACTTACCCTGAATGATACGGTTATTATTCACTGGATTTTTTT
TTTTAACCCCCGGAAGGCTAAGGCAAAAACCTCTATCTGATGCTTTCATA
CCGAAGTACGTCTACATTTCCTTTTACAGAACAGAGTTCTTTGTTCCTTT
GCGGGGTTTATCCACCTGATGTGCACATGATATAGTGATGCTCCAACAGG
TCTCCCTCTCACCTCTAGCACGCCGACGGCATACCTCTCTTCTCAGTAGC
TCGACCAATGTTTTGTAAACTCACAATGTGTTTCGTATTCCAATATTTTT
GTGGTGGGAGGTTCTCCTTTTTCTCGAATTTTGTTCCGTCAGTTCGAGTC
CAGTCTGCCTCCAGGATGTACTCGAGATCTTCGATTTTGAAGAGGGATGG
AGCCACAATGCGTAATTTTCCTCCCTATGGCGGCGCCTCGGGCGAAGCCC
CGTCACCAGCCGGAGGGGGATCGTTGGGGCTCGTGGCAAGCCGCTCGCCT
GCTTGTGTTCATCCGCTCGCCTGACACTTGGTATGACCGGCTTGCTTCGC
TTGCATCGGTACATTTATTTGTATGCTTTCAAATAACCCATACACAGCCC
TAAACAGCAGAGTATTAGGACTATCAGCATTTCTTTTTCAAGCCTAATTT
GTACAAACCCGATAGTCACTTTCCAATATCTTGATTGAGGAACACAAATG
CCGATACCTTGTGCTACACTAACACAATGACATATACTAACAGCCTTTAG
CACAACTACGGTAAGCACTGAAGATCGTACGAGTCAGCGGCCCAGGCAAT
GCATATTATGAAGAAACTAGTTTCATGCTTAGGTCGATCGACTAACAACG
CCGTCATGCGTTTTTCGATCGAACCACCACGAGCTGGTATGTAGTATTTG
GCTATGCTTCTAGGCTTTTCATAGGGAGGTTTCATTTGTCGTGGTTCAAG
GTTTACATCCAAATTTATCATGATTGTAGTAACACCTCACGGCTACGAGT
AGTGTAATACGAAGTGAAACATTCAACAACCAAGAAACATTCAGTATCTT
GTAAACCAAAAAAGGGGTGCTTGTCCTTGTTCCACTGACCATCTGTGCAA
TCGCTGGATAGATAGTACATTTGAAAAATCTGACTTTTTTGCGACCCCGG
GGAGATTTCCTGAGGTGGAAAAAGACCTAAATCATCGAAGAGCCCGTTTT
CAAATGTGATAGCGTAGCAACGGTTGTAGAGAATGATAGTCACCAACAAA
GATACCAGTAGAAAGCCCACACGATAAGAGTCTGATGAGTTATAGCATCG
TTTGCAGAGTTCAATTCCTTGAGGGTTTGAATGTGAACGAAATTTTTCGC
GACATGATTTGCTCATTTTTCGGTCGTCCAGCAGTCAACGGTGTGCCTAG
CTTTCGGTGTCTTCGCCGACTAGGTAAACGTAGAGCAATTATCCCCCACT
TGGAGGGAATGAGTAGTAACTACTATGGAACACGATGAATTCGTGCCCGG
TTGTGAATCGCGACTACAGCTGAAGTTAGCGAGAAAAAGGTCATATTGAA
GCATCTCGTTAACAAGCGAGTCCCCAGGGGTGTATTATCTTGCGCACGCT
GTGACAGGTTTGGTCTGCACCTACAAACATAGCACACCAAAGTATACCCA
ACATTTTGTCATGGCTGTCAGCTAGATGGTCTCCACCATGCTACAGGTCA
CACCCAACTGCAGAGAGAACTATGGTATACAAGTGATGGTTCGATACTCC
CAGTAACGGTGTGCAAGAGCTTCAAAGCTTCTGTATCAGCACGCAACAGC
AGCATATTGATGATCATAATATATGTACGCGTTAGTGCTTGTTGGTTTCG
TATTTTTTTTTATCATTTTACGACGCAGGTTGTGTAGACGGTCCACTGCT
GACTATATGGTGCCACCACAAGTGCCACACGGAGTTTTGAGTTCAAATTC
GACGATGTGGCAACCCGACGTTTTGTATCTAACGAGTGTCTTTCCACTTG
TAGAACCCTGAAGGCCACTGATCGAACTTGAGAGGGCACTACGAGATGTT
GATAGATGGGTGCCTGGTTTGGGGCCTAGAACTTTTCCAGACTCCCACGA
GGGTACGTAAACTGAGATCTAATCAGGGCTCGGTTTTTGGTCCAACAGCA
TTTTTTCGTAGTAACAAGGAGCATACAAGTGTCTGAAGACAAAAGTCACC
GTGTATGATGAGTTTAAATGTCAATCCCAACTCCTGCTGTCAGTAGCTTG
TCGCTTGCAAGCTACGCGAGGCCATTAGGTGCATTTAGCTGGTTGCATGT
GGTGTCCAATGAGCTCCATCAGACTCCCTCGTCTGTATGTTGTATAGGGA
CTGTTCAACTCTGTTCTTGTAGGAAGCCAATCATGACATGATGACATGCC
ACATGTTGTGGAAAAACCAGGGGTATTTTTGCTGTTGCGCGGTATTTTTT
CGGGGTTTATGAAGCCCACGAAAGGGGCACTATAAAGAAAAGGATGGTTC
TAGAAGCACCACAATAAAGCTACATTCTGTGGGAACAACATCTAGGGGTT
AGTTTTTCCAACGTCCAAGTTAATACCCTGCTATCACCACGGTAATTTTT
CATGGTATTCTGAGGATAACATGATCGACGCTTGAACTTCGAAAAAACTA
ATGCTCAGATATCGTTTCCACAGAGTGTATCTTAATCGCAATACTTCTAG
AAACATTTTTTGCTCGGTGGTACTCCTTCCGTATTCGATTTCACAAGCTC
CGGATTTCACACGCTCCTGAAATGTACCGTGCAATACCGAGAACACCCGT
GGAAAAAACGAAAAAGCGGTTCAGGCAGCAGCAAAAAATAACGGAAATGG
ACTCCGCTCTATAATTACCCTTTTTTCTCCACATGTACTTCCATGATTTA
AACGAACTTTCAACGCCTTTACCAACTAGCTAAACGTTAACCAATTCTCC
CCCCGCTTAGAGGGGATGAGTGCTAACTACTCCCGAACACGATGAGTCCG
CGCCCCGTCAAGAACGGAAGAATTTTATGACTTCACCATATCAAAATTGG
GGTCCAGGCTTGCTTCCACACTGTTCATGTGGCTCTACCTTTTTTTTCGT
TTTGTGCTGAGTGCAAGACAGGTGTTGAAGACACTGGCCATAACGTGTTA
CTGCGATGGTGATTAACTGTGGCTGTAGACCTGGAAGCACTACATATCAT
GTTGCCCCATGAAGCCCGCAAGCATAGCTAGCAGCTCGCGTGGTTAGAAC
AGAAACTGCAGTACACGTGTTTCTCCATGAAATGCGTTACCTCAGCCGCC
GACGCACACGATATTTAATGCTCACGGTAGTTGGTGCTAAGGCCTGATAG
CTTGTGCAGTTCTGCCGCCATTGAGTTGGTGTAGCACGAGATACAAACGA
TTGTCTTACTAAACAGGCGATTTCGAAAAGTGACGTAATCGAGCCATTTT
TTCATGTAATTTTCATGGTACGCACATATGCGCTTGAATAAAATGTTGCA
ATGAAATGTTGGAATGAATTGTTGGCGTACTTTGTATCTATTACTTTGTA
TCACTTCACTACTCGCGAGGTTCGTATGTTCCTCTAGCTTACTGAGGTCA
CTTCGTGTTATTTTTCCGGGGGAGTGTAGGTAAATGTAAACCGTAAAAGT
GCAAAACTGCACGTATCCCCGAAGCACCTTGCAAATACATAGATGATGAC
GTGCAATAAAAGGTAACAGCAGTAAAACAGTGGCAGTGATGATGAAAGGG
ATGTGCTTCCACGATTTTGAATGGCCCGGGGCCGACTACTCATCCCCCCC
ACACACCAGCTCGGGAGGTGGAAGAGCCATTGCGTACACCACGACGGCCA
TAGTGCTTAGGGGAGGCTGTAAAATCGGTCGTATGGAAATGGGTAAAAAC
CTAAATGTAAATGATAGGTGCTAGGTACGCCGATCTTCCTTTTTTGTGGC
ACTGCTAAGGTGCCATATTCCAGTGCGTGCACAGTCTAACGCGCACTACT
GCTTCTACACAAGATCGATGGCGCGGAACTTTGCACACGTGGTCCTATAG
CACCCATGCAGCGATGCTGAATGGCAACGGTACGAAATATATAGACTGTG
GCCATGAAATGATAGTTTTAGTTCAAAAGCATGCCGCTCATTGGCCGCGG
AGATCAGTTCCGCGTCGCACTTGAACGCGTAGAACCGGTGTGCGATAGAT
AGGTCACACCATCAGCTTTCTTTGGATATCCATATATCTGTTACATCTGC
TGTGTGGATCGAGAAATCAGTGCTACTGCCAGGCCATTTGACAAGATTCA
AGATTTCGTCAGCGAATTGCACTAAAAACGAAGATACCACACTAACGTTA
GATTCTTGTCTTGCCTCTAGTGTACGGACCGCCAGTTCAATTGTCTGTAT
ATGTTATGTTTTTCCAAATGCAACCAACATACTGAAATCACTATGGAACA
TCTCAGGCAGCGACGACATACCAACCTTTTCAATGCCAACAATTCGTCAG
CATCACCCCCAGTGCGCGTGAAACTGCTACACAGGTCGCATAACATCATA
GATCGTTGGATGTTGATGTTATGTAATGTGCACTTCATGTGCAGAGCCCT
GTGGCGTCGCGTGACTGCCTCTCTTCATGCTCCTGGTAGGGCCGACAAGG
CTGTAGATGCCTGTATATGACCACCTGGAATTGCTAATTTTTCGTTGATT
GAGCACACTTAGCACCGAACCGACTCTTCGCCGATGTCTCCTATTGTAAC
GAATCATTGCTATGAGATGGCGCTCCTATTTCCTAATCCCAGCCCGGTGT
ACTATAGTATCACAGTCCTACAGTACCACGAAGATAATGATCGACACTCA
ATTGAGGCAAGCTGTACACCAACTCTGGCGCAAACTCCCTCTCACCGAAA
AAGAGTTATGTGGCATACGCAATTCGAGAAGCACATCCTCTCCATTATCA
CTGGCAAAACATACCAAAGTACAACCAATCGTTTTCACCCTACATACCCG
AGACAGGAGATAACCAGGTTGCTGACACGCTTCACTTCGTTGGTTTGAGG
GTTAGCTGTAGGCACAATCAGTTGTGCAATACTCCCAGGCTATTCCCTTT
GCTGCGTGCCTGAGGTATGCGGATACACACACAATGGTATTGCACGCTAT
TACCCCTCATTTCATCGCCCCCCTCCCCCCGCCAAGTCCTACTGTCATTC
ACATATTACATTACCGGAGATTTTGGATAAAGCACACACATGGCCTTCCT
TGACGACATGCTTTTTTGATGCACTTCCGGTGTGAAAACCGTGATCAATA
CATGCGCATCATCAATGTACCTAAGGCGGCAGTGTGCATATCGAAGTGGA
TTGGCTCTGTATTCTGTACCGACCGCGCTTTTGATAATAGGGAGGGCTAA
ACTTTGCTGTCGTACTTGGAACTTACTGTACTTGTTGAGGCTGGTCAAAG
GTCGTAAGAGCGCCTCATACCGACCACAGAAATAAGAACTTTACTCGAGA
TGCGAATCTCGAACCTGGTCCATTCTTATTGGTCACAGCATGCTACATTA
GAGCTAGCTAGCCAAGCACTGTCCAATAAATACAACAACACCCACACATG
CACAAGCATTAAGGTGTAGTATCCTGGTCGCCGATCTTCGACAGATGTGA
ATATCTCTTAAGGTCCATGATTCTACCGGATTGTCTGGGCCAGTTTTTTT
TCATTTTCAAAATCCACCGCGTCTTTCCAATCAACGAGGGAACTTCGCGA
TTGTGTTTTCCCATGCAATCAAATCGCCCTTAACACCCCCACCAAGACCA
TGACTTACAACCTTGAAACGTGCAGTAGTGTGTGTTCGTTGGTGATTCCG
GGCACTGTCAGCATAGGAAAACGCGGCAGTACTTAGTTAGCGCCATAACC
CAGGAGAACCATGCGTCCATTGGAATGTGCTACATCATTTATTTAGTGTA
CCAGTGGGCTCTCTTCGACAGGACCGCCACGTGAAGTCGGTTCCCTGGTT
CTCTCGATTACGACATCTCTATTCTGAAGCTCTGGGAGAGCTGACCAACA
GAGTGAATCGGATGTGGCTAGACACTCATCTCTGCCATACAGAGTAACGA
ACACTTCTCGTCCTCGCGCTGTGTGTTTCCTTGACGCTTTCCTTGACGCT
TTTTCCTCGGTGTAACGGAAGGAAAGTTGGACATTGGTGAGGAAAATGTT
GGTGTTGCGAACGCTAGCAATCCATCGCCTCAAACTGAAAGTGAACCCGC
GAACTCTCCTTTCAGCTTGGCGCCAACGCGTTGGTTGATCAGCATGGATA
TAGGAAGAGAGAAAGGCACGTGGATGCCGCAATCGTGGGGCATCAGTGGA
AGGTGGGCATATCCAAGAATCGGCGTTCAAACAATGGCATGTAAAGATGT
AACCCTCACTCGCAATCCAGTCTGTTCGACCGATGTCAACCTCCAGGAAA
CGAACGACCGCCTATCATGTGCAAAATAGTGCTACTCTTGCACTGACACT
CACTCTGGTACAGATATATCTCAGCGCCTCTTTATCCACGATCTTCGCAC
TTTGGCCATATCGTTGGAGGATCGGGCTTGATGGAATCAATTGTGGTTTG
GCTTTTGTTACGCCACAGGAGACTGGAGGTAGATCTATCTGTCCAATTCT
TGCCCGACGGAGAGATGGCGGTTGAGGTCGTAAGCCCTTTCATCGATATG
ACAGTTGGACCTGGAAAGTGGACTGTCGGACCTGCAGAAGGAAGTTCTCG
GCGGCGAACGAACAAAAGCTCAGGTCAGCAGAACGAGGTTGCTTGTCTCA
AGGTCACGCTCGCCGTTTCGCTTTCTTTCGTAATCTAATGGTTCAGCTTT
CGACGACTGGAAGGTTGCAATAGTCAATAGTTAGATGTGGCCGTGCAGAG
GAAAGAGGGTACAACGTTGCGAAATATGTCCCTGTTTACATTGGGGCGGG
CCAATGAGTCAAGTAGAACAAAATACATAGAGCGAATGATAATGTCAGTA
GCACCATCATCGCCTCGTGACAAGCGTCGGAGTGTCTTGATGCCGTCCAA
CTTTTCCCCCTATTTGTGCGGTTTCAGGCAGTTTGAGAGTCATTGCAGAT
ACCTGTCGTTTCTGGGTGGAGACGAATGGCTTTGCCCGTGGAGATGTATC
TATTCCCCCAGGCAAAATATATTTCGCTGTACCGGCATGGGGGTGCAGAT
TGTCTCGAAAAGGTCTGGTGACGGTGCGACAACGACGGTGAGCTGCTGTG
CTTTGTGGTGTTTGGGCAGGGGGACTGCAAATCCTTAGAAAGTTTTTTAT
CGGGTTACAGTGACGGCTTGCTTCACTTTCACCTCAATCAATGAATGCGT
TGTACTCAGGAGTACATGTGTCAGGTGCTGTTTTCACATGTTTTGATTTG
TTGTGTTATTCCTCTTGTTCGACGGTGGCCGTACTAACAAGGTGGATCGT
GCGCGAAGAATCCCGCATCCTCGGCGTATTCGGTACCGAGATCATTGAGA
CGGATGCTAACGGCCAAGCACAGCCTGGTGTACCGCGTCCACGTTTGCCG
CCTTTCGCCAGCGGCTACGAGGACAGATGAATGGCGTGAAATGCACTCTC
CAGGACCACTGATGATTTCTGTGATTACCTATCCACAAATTTAACAAAAT
TCACGAAGAAAATCAAGGTTAAGTAGATATGTTTTCGTTACCCGCTACTT
CGAAAGTGTTTGTTCATTACATTTAGAAGCGAGGGGAATCCACCGTCCCC
AAAAGAGGGGAAAGCATAACCTATTCTGCAGCGTACCTTAAGTGTAACAT
AATGCGAGGGATAGTACCAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4070:5961..15630+

>mRNA_H-paniculata_contig4070.10517.1 ID=mRNA_H-paniculata_contig4070.10517.1|Name=mRNA_H-paniculata_contig4070.10517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at H-paniculata_contig4070:5961..15630+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGAGGTCCGTGAAGACGATCCATATGATAGGAGTGCTGGCGGTCAT
GTGTGAGACGCGTTGCTGTGCGTTCACTCCGAGCTTGCCCAGTATTTCAA
GACAATCATTGAGACAGCGGAGGCTGGAGTGCGAGCAGGATCCTGAAATA
AATGGTCGGGACGATGCCGGAAGAGCATTTGAGCACGCCGCAAAGCTGAG
GCGGGAGATCGCGGAGTTAGAGCTTGATCTCAGCAAAGATGTTGAGGTCC
GTGAAGACGATCCATATGATAGGAGTGCTGGCGGTCATGTGTGAGACGCG
TTGCTGTGCGTTCACTCCGAGCTTGCCCAGTATTTCAAGACAATCATTGA
GACAGCGGAGGCTGGAGTGCGAGCAGGATCCTGAAATAAATGGTCGGGAC
GATGCCGGAAGAGCATTTGAGCACGCCGCAAAGCTGAGGCGGGAGATCGC
GGAGTTAGAGCTTGATCTCAGCAAAGGAAAGTTGGACATTGGTGAGGAAA
ATGTTGGTGTTGCGAACGCTAGCAATCCATCGCCTCAAACTGAAAGTGAA
CCCGCGAACTCTCCTTTCAGCTTGGCGCCAACGCGTTGGTTGATCAGCAT
GGATATAGGAAGAGAGAAAGGCACGTGGATGCCGCAATCGTGGGGCATCA
GTGGAAGGAAAGTTGGACATTGGTGAGGAAAATGTTGGTGTTGCGAACGC
TAGCAATCCATCGCCTCAAACTGAAAGTGAACCCGCGAACTCTCCTTTCA
GCTTGGCGCCAACGCGTTGGTTGATCAGCATGGATATAGGAAGAGAGAAA
GGCACGTGGATGCCGCAATCGTGGGGCATCAGTGGAAGGAGACTGGAGGT
AGATCTATCTGTCCAATTCTTGCCCGACGGAGAGATGGCGGTTGAGGTCG
TAAGCCCTTTCATCGATATGACAGTTGGACCTGGAAAGTGGACTGTCGGA
CCTGCAGAAGGAAGTTCTCGGCGGCGAACGAACAAAAGCTCAGGAGACTG
GAGGTAGATCTATCTGTCCAATTCTTGCCCGACGGAGAGATGGCGGTTGA
GGTCGTAAGCCCTTTCATCGATATGACAGTTGGACCTGGAAAGTGGACTG
TCGGACCTGCAGAAGGAAGTTCTCGGCGGCGAACGAACAAAAGCTCAGGC
AGTTTGAGAGTCATTGCAGATACCTGTCGTTTCTGGGTGGAGACGAATGG
CTTTGCCCGTGGAGATGTATCTATTCCCCCAGGCAAAATATATTTCGCTG
TACCGGCATGGGGGTGCAGATTGTCTCGAAAAGGTCTGGTGACGGTGCGA
CAACGACGGCAGTTTGAGAGTCATTGCAGATACCTGTCGTTTCTGGGTGG
AGACGAATGGCTTTGCCCGTGGAGATGTATCTATTCCCCCAGGCAAAATA
TATTTCGCTGTACCGGCATGGGGGTGCAGATTGTCTCGAAAAGGTCTGGT
GACGGTGCGACAACGACGGTGGATCGTGCGCGAAGAATCCCGCATCCTCG
GCGTATTCGGTACCGAGATCATTGAGACGGATGCTAACGGCCAAGCACAG
CCTGGTGTACCGCGTCCACGTTTGCCGCCTTTCGCCAGCGGCTACGAGGA
CAGATGAGTGGATCGTGCGCGAAGAATCCCGCATCCTCGGCGTATTCGGT
ACCGAGATCATTGAGACGGATGCTAACGGCCAAGCACAGCCTGGTGTACC
GCGTCCACGTTTGCCGCCTTTCGCCAGCGGCTACGAGGACAGATGA
back to top