mRNA_H-paniculata_contig407.10513.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig407.10513.1
Unique NamemRNA_H-paniculata_contig407.10513.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig407.10513.1 vs. uniprot
Match: D7G416_ECTSI (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G416_ECTSI)

HSP 1 Score: 441 bits (1134), Expect = 1.320e-147
Identity = 234/298 (78.52%), Postives = 255/298 (85.57%), Query Frame = 3 
Query:  213 FMVPPRAFR--ATRTNGARAANAGVVRMSSGLPPDFDPLSPSLDHLSIIDAASQGRAQPRMIGGAGGVSADGHHRDSDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESATKPVYMYINTPGTSTPDGRAIGFETEAFAISDTMNYIKPPVYTIGVGQAFGLGAMLLASGQKGHRSALPNASIMLQQPRSMARGQASDIAIKAKEVMSNRKTATQMLAEACGKPFDEVLIDSSRTFYMSPDEAVTYGLIDRVMKP-KTRVADTPSFLDALSVGPSGKNARYYED 1097
            F+  PR  +  A+R+NGAR A        SGLP DFDPLSPS+DHLS+ID AS+GR+QP MIGGAGGV+ D  + D DGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESA+KPVYMYINTPGTSTPDGRAIGFETEAFAISD MNYIKPPVYTIGVGQAFGLGAMLLASG+KGHRSALPNASIML QPRSMARGQASDIAIKAKEVM+NRKTATQML+EACGKP+DEVL DSSRTFYMSPD+AV YGLID+V++  K      P+FLDALS+G        YED
Sbjct:   27 FLSSPRLAKVGASRSNGAREATRTGAMHMSGLPADFDPLSPSMDHLSMIDQASKGRSQPSMIGGAGGVTED-RNTDLDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYINTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLGAMLLASGEKGHRSALPNASIMLHQPRSMARGQASDIAIKAKEVMANRKTATQMLSEACGKPYDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSKKDDVVAPAFLDALSMGSKTNRQSLYED 323
[Close]
BLAST of mRNA_H-paniculata_contig407.10513.1 vs. uniprot
Match: A0A835YRP6_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP6_9STRA)

HSP 1 Score: 343 bits (879), Expect = 8.360e-110
Identity = 190/294 (64.63%), Postives = 225/294 (76.53%), Query Frame = 3 
Query:  192 LVGGA--EGFMVP-PRAFRATRTNGARAANAGVVRMSSGLPPDFDPLSPSLDHLSIIDAASQGRAQPRMIGGAGGVSADGHHRDSDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESATKPVYMYINTPGTSTPDGRAIGFETEAFAISDTMNYIKPPVYTIGVGQAFGLGAMLLASGQKGHRSALPNASIMLQQPRSMARGQASDIAIKAKEVMSNRKTATQMLAEACGKPFDEVLIDSSRTFYMSPDEAVTYGLIDRVM-KPKTRVADTPSFLDALSV 1061
            LVG A  + F  P PRA       GA +++   ++ S      FDPL P   HL ++   +Q  A P+MI  +GG S+    R  DGAR+GPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYES+TKP+YMYINTPGTSTPDGR++GFETEAFAI+D M Y++PPVYTI VGQAFG GAMLL+ GQKG+R+ALPNASIML QPRS ARGQASDIAIKA+EVM+NRK    ML++ACGKP++ V  D+SRTFYMSPDEAVTYGLID+V+   K   A  P FLD++ +
Sbjct:   10 LVGAACTQAFTAPLPRA------RGAVSSSRISMQSSPDFSLPFDPLGPVDQHLPLV---AQAAASPQMI--SGGASSG--ERRYDGARIGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESSTKPIYMYINTPGTSTPDGRSVGFETEAFAIADCMKYVRPPVYTIAVGQAFGTGAMLLSQGQKGNRAALPNASIMLHQPRSQARGQASDIAIKAREVMANRKITCTMLSQACGKPYEAVEKDASRTFYMSPDEAVTYGLIDKVLTNSKKDNAPKPKFLDSIGL 290
[Close]
BLAST of mRNA_H-paniculata_contig407.10513.1 vs. uniprot
Match: A0A7S2W9Z3_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9Z3_9STRA)

HSP 1 Score: 296 bits (758), Expect = 3.320e-92
Identity = 149/207 (71.98%), Postives = 177/207 (85.51%), Query Frame = 3 
Query:  438 DGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESATKPVYMYINTPGTSTPDGRAIGFETEAFAISDTMNYIKPPVYTIGVGQAFGLGAMLLASGQKGHRSALPNASIMLQQPRSMARGQASDIAIKAKEVMSNRKTATQMLAEACGKPFDEVLIDSSRTFYMSPDEAVTYGLIDRVMKPKTR-VADTPSFLDAL 1055
            +GAR+ PPPDLPSLLLHNRIVY+GMPLVPAVTELIIAELLYLNYESATKPVYMYIN+PGT++ DGRA+GFETEAFAI+D M YIKPPV+TI +GQA+G  AMLL+ G  G RS LPN+SIML QPRSMARGQASDIAIKA+EV++NRK    ++A ACGK  D V+ D+SRT Y SP+EAV YG+ID+VM PK + +  TPSF+++L
Sbjct:   56 NGARISPPPDLPSLLLHNRIVYIGMPLVPAVTELIIAELLYLNYESATKPVYMYINSPGTTSADGRAVGFETEAFAIADCMKYIKPPVHTICIGQAYGAAAMLLSQGALGKRSCLPNSSIMLHQPRSMARGQASDIAIKAREVLNNRKVTCSLIARACGKDLDTVMNDASRTRYFSPEEAVEYGIIDKVMSPKAQNLPVTPSFMNSL 262
[Close]
BLAST of mRNA_H-paniculata_contig407.10513.1 vs. uniprot
Match: A0A7S3JWT2_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWT2_9STRA)

HSP 1 Score: 293 bits (751), Expect = 7.840e-91
Identity = 155/227 (68.28%), Postives = 182/227 (80.18%), Query Frame = 3 
Query:  381 PRMIGGAGGVSADGHHRDSDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESATKPVYMYINTPGTSTPDGRAIGFETEAFAISDTMNYIKPPVYTIGVGQAFGLGAMLLASGQKGHRSALPNASIMLQQPRSMARGQASDIAIKAKEVMSNRKTATQMLAEACGKPFDEVLIDSSRTFYMSPDEAVTYGLIDRVMKPKTR--VADTPSFLDAL 1055
            PR +  AGG   + +    DG R+GPPPDL SLLLHNRIVYLGMP+VPAVTELI+AELLYLNYESATKPV +YIN+PGT + DGR++GFETEAFAI+DTM YIKPPV+TI VGQAFG  AMLL+ G KG R+ LPNASIML QPRSMARGQASD+AIKA+EVM NRK   ++LA ACGK  +EVL D+ RT Y++P++AV YGLIDRV+    R  V   PSF+DAL
Sbjct:   65 PRAV--AGGAEQEMY----DGVRIGPPPDLASLLLHNRIVYLGMPMVPAVTELIVAELLYLNYESATKPVTLYINSPGTVSADGRSVGFETEAFAIADTMKYIKPPVHTICVGQAFGAAAMLLSQGAKGFRACLPNASIMLHQPRSMARGQASDVAIKAREVMVNRKIQCELLARACGKSVEEVLQDAQRTKYLTPEQAVQYGLIDRVLHTTARESVEQQPSFMDAL 285
[Close]
BLAST of mRNA_H-paniculata_contig407.10513.1 vs. uniprot
Match: A0A8J2SEL5_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEL5_9STRA)

HSP 1 Score: 288 bits (738), Expect = 5.080e-89
Identity = 153/238 (64.29%), Postives = 183/238 (76.89%), Query Frame = 3 
Query:  351 IDAASQGRAQPRMIGGAGGVSADGHHRDSDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESATKPVYMYINTPGTSTPDGRAIGFETEAFAISDTMNYIKPPVYTIGVGQAFGLGAMLLASGQKGHRSALPNASIMLQQPRSMARGQASDIAIKAKEVMSNRKTATQMLAEACGKPFDEVLIDSSRTFYMSPDEAVTYGLIDRVMKPKTRVADTP---SFLDAL 1055
            + + S     P M+  AGG + + +    DG R+GPPPDL SLLLHNRIVYLGMP+V AVTELI+AELLYLNYES +KPV +YIN+PGT    G+A+GFETEAFAI+D M YIKPPV TI VGQAFG  AMLLA G+KG R  LPNASIML QPRS ARGQASDIAI+AKEVM+NRK + ++LA ACG+P DEV+ D+SRT Y+ PDEAV YGL+D+V+    + AD P   SF+DAL
Sbjct:   46 VPSMSGATMPPSMV--AGGAAQETY----DGVRIGPPPDLASLLLHNRIVYLGMPMVSAVTELIVAELLYLNYESPSKPVTLYINSPGTVNAQGQAVGFETEAFAIADCMKYIKPPVQTICVGQAFGAAAMLLAQGEKGKRFCLPNASIMLHQPRSQARGQASDIAIRAKEVMANRKVSCELLARACGRPVDEVMRDASRTKYLQPDEAVEYGLVDKVLHNVGKAADAPKKPSFMDAL 277
[Close]
BLAST of mRNA_H-paniculata_contig407.10513.1 vs. uniprot
Match: F0Y0T1_AURAN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0T1_AURAN)

HSP 1 Score: 283 bits (724), Expect = 9.150e-88
Identity = 149/223 (66.82%), Postives = 175/223 (78.48%), Query Frame = 3 
Query:  399 AGGVSADGHHRDSDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESATKPVYMYINTPGTSTPDGRAIGFETEAFAISDTMNYIKPPVYTIGVGQAFGLGAMLLASGQKGHRSALPNASIMLQQPRSMARGQASDIAIKAKEVMSNRKTATQMLAEACGKPFDEVLIDSSRTFYMSPDEAVTYGLIDRVM----KPKTRVADTPSFLDAL 1055
            AGG +A+ +    DG R+GPPPDL SLLLHNRIVYLGMP+V AVTELI+AELLYLNYES TKPV +YIN+PGT    G+++GFETEAFAI+D M YIKPPV TI VGQAFG  AMLLA G+KG R  LPNASIML QPRS ARGQASDIAI+A+EVMSNRK + +++A ACG+  DEV+ D+SRT Y+ PDEAV YGLID+V+    K        PSF+DAL
Sbjct:    3 AGGQAAETY----DGVRIGPPPDLASLLLHNRIVYLGMPMVSAVTELIVAELLYLNYESPTKPVTLYINSPGTVNSQGQSVGFETEAFAIADCMKYIKPPVQTICVGQAFGAAAMLLAQGEKGKRFCLPNASIMLHQPRSQARGQASDIAIRAREVMSNRKVSCELMARACGRSVDEVMADASRTKYLQPDEAVEYGLIDKVLHNVGKDAAAAVAKPSFMDAL 221
[Close]
BLAST of mRNA_H-paniculata_contig407.10513.1 vs. uniprot
Match: A0A7S2Y1H4_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1H4_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.620e-87
Identity = 148/231 (64.07%), Postives = 180/231 (77.92%), Query Frame = 3 
Query:  372 RAQPRMIGGAGGVSAD----GHHRDSDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESATKPVYMYINTPGTSTPDGRAIGFETEAFAISDTMNYIKPPVYTIGVGQAFGLGAMLLASGQKGHRSALPNASIMLQQPRSMARGQASDIAIKAKEVMSNRKTATQMLAEACGKPFDEVLIDSSRTFYMSPDEAVTYGLIDRVMKPKTRVADTPSFLDA 1052
            R  P ++ G GG +      G++   DGAR+GPPPDLPSLLL+NRI+YLGMPLV  V+ELIIAE LYLNYES TKP+Y+YINTPGT T DG+A+GFETEAF+I+DTM Y+K PV+TI VGQA+G+GA+L A G KG RSALPNASIML QPRSMARGQASDIAIKA+EV+ NR+ A +M+A AC KP +E+  D SRT Y++P EAV YGLID+VM+    V+     L A
Sbjct:   43 RESPLILNGLGGEADSTPDTGYY---DGARIGPPPDLPSLLLNNRIIYLGMPLVAQVSELIIAEFLYLNYESKTKPIYLYINTPGTMTADGKAVGFETEAFSIADTMKYVKAPVHTIIVGQAYGMGALLAAMGDKGQRSALPNASIMLHQPRSMARGQASDIAIKAREVLGNRRVAQEMMARACNKPVEEIARDCSRTKYLTPQEAVEYGLIDKVMEVGQPVSSAGGVLPA 270
[Close]
BLAST of mRNA_H-paniculata_contig407.10513.1 vs. uniprot
Match: A0A7S0ZCQ2_9RHOD (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZCQ2_9RHOD)

HSP 1 Score: 283 bits (724), Expect = 2.980e-87
Identity = 139/207 (67.15%), Postives = 172/207 (83.09%), Query Frame = 3 
Query:  438 DGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESATKPVYMYINTPGTSTPDGRAIGFETEAFAISDTMNYIKPPVYTIGVGQAFGLGAMLLASGQKGHRSALPNASIMLQQPRSMARGQASDIAIKAKEVMSNRKTATQMLAEACGKPFDEVLIDSSRTFYMSPDEAVTYGLIDRVMK-PKTRVADTPSFLDAL 1055
            +GAR+GPPPDLPSLLLHNRIVY+GMPLVPAVTELIIAELLYL Y    KP++MY+N+ GT+ PDG + GFETEAFA+ DTMNYIKPPV+TI +GQAFG  AMLLA G+KGHR+ALPNA++M+ QPRS ARGQA+DIAIKAKEV+ NR+   +++AEACGK  D V+ D++RT Y+S  +AV YGLID+V++ PK   +  P+FL AL
Sbjct:   50 EGARIGPPPDLPSLLLHNRIVYIGMPLVPAVTELIIAELLYLQYNDTDKPIFMYVNSTGTTNPDGSSAGFETEAFAVVDTMNYIKPPVHTICIGQAFGTAAMLLAGGEKGHRAALPNATVMIHQPRSTARGQAADIAIKAKEVLLNRRVTMEIIAEACGKDLDTVMADAARTRYLSAADAVEYGLIDKVLESPKDLPSPAPTFLSAL 256
[Close]
BLAST of mRNA_H-paniculata_contig407.10513.1 vs. uniprot
Match: A0A7S2SH66_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SH66_9STRA)

HSP 1 Score: 283 bits (725), Expect = 3.740e-87
Identity = 141/220 (64.09%), Postives = 180/220 (81.82%), Query Frame = 3 
Query:  399 AGGVSADGHHRDSDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESATKPVYMYINTPGTSTPDGRAIGFETEAFAISDTMNYIKPPVYTIGVGQAFGLGAMLLASGQKGHRSALPNASIMLQQPRSMARGQASDIAIKAKEVMSNRKTATQMLAEACGKPFDEVLIDSSRTFYMSPDEAVTYGLIDRVMKPKTRVADTPSFLDALS 1058
            AGG +A+ ++   +G R+GPPPDLPSLLLHNRIVY+GMPLVPAVTELIIAELLYLNYES T P+ MYIN+ GT+T +G+++GFETEAFAI+D M Y++PPV+T+ +GQAFG  AMLL+ G++G RS+LPNA+IML QP+SMARGQASDIAI+A+EV SNRKT   ++A AC KP + V+ D SR  Y+SP EAV YGLIDRV++ ++ +   PSF+  LS
Sbjct:   56 AGGAAAEEYY---EGVRIGPPPDLPSLLLHNRIVYIGMPLVPAVTELIIAELLYLNYESTTDPITMYINSSGTTTANGQSVGFETEAFAIADVMKYVRPPVHTVALGQAFGAAAMLLSQGKRGKRSSLPNATIMLNQPKSMARGQASDIAIRAREVASNRKTTCDLIARACQKPIETVMDDCSRVKYLSPTEAVEYGLIDRVLQSESSLPVKPSFIQQLS 272
[Close]
BLAST of mRNA_H-paniculata_contig407.10513.1 vs. uniprot
Match: A0A1X6P675_PORUM (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P675_PORUM)

HSP 1 Score: 281 bits (720), Expect = 1.920e-86
Identity = 143/207 (69.08%), Postives = 173/207 (83.57%), Query Frame = 3 
Query:  438 DGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESATKPVYMYINTPGTSTPDGRAIGFETEAFAISDTMNYIKPPVYTIGVGQAFGLGAMLLASGQKGHRSALPNASIMLQQPRSMARGQASDIAIKAKEVMSNRKTATQMLAEACGKPFDEVLIDSSRTFYMSPDEAVTYGLIDRVM-KPKTRVADTPSFLDAL 1055
            DG R+GPPPDLPSLLLHNRI+YLGMPLV AVTELIIAE LYL YE A KP+ +YIN+ GTS+PDG+ +GFETEAFAI+DTM+Y+KPPV+TI VGQAFG+ AMLLASG+KGHRSALPNA+IML QPR  ARGQA+DIAIKA+EV+ NRK A Q++A+A G+P ++V  D++RT Y+SP EA  YGLID+V+   K   +  PSFL AL
Sbjct:   63 DGVRLGPPPDLPSLLLHNRIIYLGMPLVAAVTELIIAEFLYLQYEDAEKPITLYINSTGTSSPDGQNVGFETEAFAIADTMSYVKPPVHTICVGQAFGMAAMLLASGEKGHRSALPNATIMLHQPRGSARGQAADIAIKAREVLHNRKQAFQIMADASGQPLEQVEADANRTKYLSPQEAKEYGLIDKVLTSEKDLPSKAPSFLSAL 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig407.10513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G416_ECTSI1.320e-14778.52ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A835YRP6_9STRA8.360e-11064.63ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2W9Z3_9STRA3.320e-9271.98ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S3JWT2_9STRA7.840e-9168.28ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A8J2SEL5_9STRA5.080e-8964.29ATP-dependent Clp protease proteolytic subunit n=1... [more]
F0Y0T1_AURAN9.150e-8866.82ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2Y1H4_9STRA1.620e-8764.07ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S0ZCQ2_9RHOD2.980e-8767.15ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2SH66_9STRA3.740e-8764.09ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A1X6P675_PORUM1.920e-8669.08ATP-dependent Clp protease proteolytic subunit n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig407contigH-paniculata_contig407:12976..22538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score445.3
Seed ortholog evalue2.5e-122
Seed eggNOG ortholog2880.D7G416
Preferred nameCLPR4
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
Hectar predicted targeting categorysignal peptide
GOsGO:0000302,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010468,GO:0019222,GO:0031967,GO:0031975,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:1901700
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0740@1,KOG0840@2759
Ec32 ortholog descriptionATP-dependent Clp protease proteolytic subunit
Ec32 orthologEc-19_000460.1
EC3.4.21.92
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons7
Model size2086
Cds size972
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930245.0993664-UTR-H-paniculata_contig407:12975..139611622930245.0993664-UTR-H-paniculata_contig407:12975..13961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig407 12976..13961 -
1691481207.9499574-UTR-H-paniculata_contig407:12975..139611691481207.9499574-UTR-H-paniculata_contig407:12975..13961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig407 12976..13961 -
1622930245.2178245-UTR-H-paniculata_contig407:22410..225381622930245.2178245-UTR-H-paniculata_contig407:22410..22538Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig407 22411..22538 -
1691481208.0356266-UTR-H-paniculata_contig407:22410..225381691481208.0356266-UTR-H-paniculata_contig407:22410..22538Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig407 22411..22538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930245.1161473-CDS-H-paniculata_contig407:13961..140601622930245.1161473-CDS-H-paniculata_contig407:13961..14060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 13962..14060 -
1691481207.9657505-CDS-H-paniculata_contig407:13961..140601691481207.9657505-CDS-H-paniculata_contig407:13961..14060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 13962..14060 -
1622930245.131288-CDS-H-paniculata_contig407:15213..153511622930245.131288-CDS-H-paniculata_contig407:15213..15351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 15214..15351 -
1691481207.9764137-CDS-H-paniculata_contig407:15213..153511691481207.9764137-CDS-H-paniculata_contig407:15213..15351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 15214..15351 -
1622930245.1454318-CDS-H-paniculata_contig407:16719..168601622930245.1454318-CDS-H-paniculata_contig407:16719..16860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 16720..16860 -
1691481207.9860365-CDS-H-paniculata_contig407:16719..168601691481207.9860365-CDS-H-paniculata_contig407:16719..16860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 16720..16860 -
1622930245.1560602-CDS-H-paniculata_contig407:17143..173141622930245.1560602-CDS-H-paniculata_contig407:17143..17314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 17144..17314 -
1691481207.9957187-CDS-H-paniculata_contig407:17143..173141691481207.9957187-CDS-H-paniculata_contig407:17143..17314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 17144..17314 -
1622930245.1707358-CDS-H-paniculata_contig407:17933..180981622930245.1707358-CDS-H-paniculata_contig407:17933..18098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 17934..18098 -
1691481208.0047693-CDS-H-paniculata_contig407:17933..180981691481208.0047693-CDS-H-paniculata_contig407:17933..18098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 17934..18098 -
1622930245.1904309-CDS-H-paniculata_contig407:19134..192731622930245.1904309-CDS-H-paniculata_contig407:19134..19273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 19135..19273 -
1691481208.014529-CDS-H-paniculata_contig407:19134..192731691481208.014529-CDS-H-paniculata_contig407:19134..19273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 19135..19273 -
1622930245.2051437-CDS-H-paniculata_contig407:22291..224101622930245.2051437-CDS-H-paniculata_contig407:22291..22410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 22292..22410 -
1691481208.0238311-CDS-H-paniculata_contig407:22291..224101691481208.0238311-CDS-H-paniculata_contig407:22291..22410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig407 22292..22410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig407.10513.1prot_H-paniculata_contig407.10513.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig407 13962..22410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig407.10513.1

>prot_H-paniculata_contig407.10513.1 ID=prot_H-paniculata_contig407.10513.1|Name=mRNA_H-paniculata_contig407.10513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp
MVKTRRTTSCCGVVVATWCTLLVGGAEGFMVPPRAFRATRTNGARAANAG
VVRMSSGLPPDFDPLSPSLDHLSIIDAASQGRAQPRMIGGAGGVSADGHH
RDSDGARVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESA
TKPVYMYINTPGTSTPDGRAIGFETEAFAISDTMNYIKPPVYTIGVGQAF
GLGAMLLASGQKGHRSALPNASIMLQQPRSMARGQASDIAIKAKEVMSNR
KTATQMLAEACGKPFDEVLIDSSRTFYMSPDEAVTYGLIDRVMKPKTRVA
DTPSFLDALSVGPSGKNARYYED*
back to top

mRNA from alignment at H-paniculata_contig407:12976..22538-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig407.10513.1 ID=mRNA_H-paniculata_contig407.10513.1|Name=mRNA_H-paniculata_contig407.10513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9563bp|location=Sequence derived from alignment at H-paniculata_contig407:12976..22538- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGCTTTCCGCACCTGCTTACCCTTGCTCACGTGCGTCGCTATTGGAA
CAGGGCTCCACGCTGCGGACGTGCATACTAAGCAAGTGTGACACGAAGGG
TGGAATAGTGTCAAATTAGATATCCATCATGGTGAAAACAAGACGAACAA
CGTCTTGTTGTGGTGTGGTCGTAGCGACTTGGTGCACCTTGTTAGTGGGC
GGTGCCGAGGGCTTCATGGTGCCGCCGCGGGCGTTCAGGGCAACCAGGTG
AGGCACACATTGCCTGTTGTGCTTTATGTCACATTGGAGACAGAATTATT
ATGCCGACATATGTGCGAATGAGGCAGTCGTGCTCTGTCTGTTGAGGAGT
GTTTCCGTTTTGTGACGGCGACACCTCCTCGTGTATCTGTCAGGGTGTGT
TGGGTCATGAAGGACAACCTGCTGTACGGTCAAGGCAGATGGGTTCATGC
GAAACTTACTGTACCTCCCACGACCCTCAGTTTCGACTGATCACATGTAC
TGTGGAGCCTGATGTGGTGCTGTCTCGCACCCAGCGCTGAAGGTTTGAGA
ATCGTTGCAACACCGCAACAGTTTGACTGGCTTTGCGGTGTGAAGATTGG
TCTTGTTGCACGTGGCACTGCCCTGTATTCTAGTTCTACTGTTACACGCT
ATCGTGCTTTAGTCAATTGACTCTATTTAGGTAGGTAATTTTCGCTGGAC
ACCTTTGGGCGGGCTGCCGTCATTTCTCGAAACTGGGACCACGGTAAAGC
GCGCCACTCTGCCGTAGAGAAGCTAGTGGGACTTGAGACATCAACTCTTG
GTGCGCCCGTGGCTGTTTCGGAACCAACAACTTAAACTGACAAAAGAATA
TTCAACTGCAGATGCTTCACGGCAGCTTCATGGCCAACTAACTCCTTGTT
TGTGCCGATGTACCGGTTTTGTATCAGCTGTCTGAGAACAGCGGCAGCTC
CTTGTCCCGGCAATATGGTTATAAGTAGGCGTTGCCTTTTCCTTATTTTT
AGGACGAGGTTCGGTGGAGACTGGCGCTCTAAGAGTTAGGGATGGTTAGG
GAGGGGTACAGTACATGAAATGTATATTAATCTCGTATTAGTTGTGTACG
AGTACCACATGATCCTATTTCGGCATTTTTCTGTTTTTGGAACAAAAATG
TATCCGATATCCCGTCATGTGGCAGGCGTCGTTTTTAAGTAGGGGGGTCA
AGGTTTCGGCCGTTTTGGATGATGAGCGAGGATTTTTATAGCGGTGGCAT
GGCTCCTAGATTGATTGTTGGAAACTTGGTTTTTGTCACGCATTAAAACC
AAGTGCTTTCCATTACCATGCATCGAAAACCATCGTAAAATCGAAAACTT
GTACTTTTTTCACGTCTGAAAAACAACCAAAGTTTCCGATGCAGCTGGAT
TTCTTTTTGCCCCATTTGACATTTTGGCAAGAATTCTCTTGCGAAAAAAA
TGTCGTGAGAAGCGGGAAATTAGTAAATCGCTCTTCGTGAAGCAATAGGT
AGCTCTGGAGGAATATGGCATGAACAACTGCGTCTCCCGGATCAAAAACC
TTTGGAAATGTTCAAAATTAAGTTTTCGGCGCTCACAAAATTTGTCCTCA
GCTACCCTCGTTTGTCCAACCATCGAATTCTAACCGCTAACTACTGTAAT
TTCCCTGTGACATCGCGTGAAAGTTGTGGCCATCCAACTAATTCCCCCTG
CGCCAAAGGGAGGCCGACGAAACAATCCAAGAAGGAAATTTATCCGAACA
AAAGCGACTAATGGGCTGGCTGCATGGCTCGCGGGCGTGTAGTATCTTTG
TCAACAGGCCGCTAGCATGGCTTGATGGTTCCCATCCAAGTCGTGGCTTA
GTAAGGACGTGATTCGTTTAATTATTTGCCCTCGTTTATTGATTTATTGT
ATAAATATATAACTGCAAATTATGATGAAAAACATTTAAAAGAAATAATA
CCAATAAAAAAAAAATGTTTAAAATAATATTTCATCACCTATTTTAATAA
ACATATATATGCACTCATTTGACGATTGGGTAGAAAAAAAAGGGATGTTT
TGTTTAATTAACAACCCCCCATTTTTAATTTAACAGAGTATAAACAGAAT
GGGTTTAATTCGAAAATCTTGAATAAAAGCCTAATGTATTAATAGGAAAA
AACAAGTGTTTTATTCTAGGTGTGACAATGATTTTATAATCGGCGTAGAG
GGGTCAAGGCACCCTCGTCTTGGGGTTTGTTTGGTATGCGCACGGCTGCA
CAGTCCGCAACCGGTGTCATTTAGAGTGTAGTTTGTGCTTTGCACTCCTA
CCTGGCGCGGTAGTCGTGGTCCAAAGAACTATGTCGACGCTCGTCTGTGC
TGAATTTTCCTGTCTGTACCGAGCTGTCTGAACAGCAGCGTTTTTCTATT
CAAGTAATCACGTAGCAAGGAAGCGTTGTCTCGAAAAAAAAATCCAGTTT
GTTTTTCTCTGTTTTGAATGGCAAGACTGGCGCCCATAACATAAATCTTG
TGCATAAGACAGTAAAAAGACGTATCACTGTATACAAAAGCCATGCACTA
TTTTCCTACCTTATTCCGCACGAACTGCACGGTACGTTCACGTTGATTAC
CTCTAGTTCCCCATGGCAGTCAACGTAGCACCAACAGTATGCAAACGGCG
CCTTTGCACGTGCCTTTCACTTCCCCAGCATACACACACAGTGAAGCCGC
AACGCGCGATAAAAGAGAAAAAATAGGTGGATTACTATTAGGAGCAATTC
AATGGCAGTTCCGCTGGCGTAATTTTCGATTTTTTTCTCTTGCAGCATTG
TGCAAAGCCCATAATCCATGCGTAATGATGGGTTGCGGTCCCAAAGGTTG
TGTGGTTCCCGTTGCAAAAAAAAATCCATGTATCATGTGACAGCTCTGCT
AGAACCACCTTGTACAGAGTGTGACGAGTGTTCGGAGGCGTGAGGTCAAG
GGCTTCCTAAATGTACCTCTTTCGATGGACCTGTTTGTAGCATGCAAAAA
TGCGCAACGAGCCAATTTCATGATTTCGGTACAGGGAAATGAGGAATTCG
ATGCACCACATGGTTTCTGTAAATGTGTGGTTGGTCACAGCCGGTCTCTA
GATTTTTCACCAGTCGATCGATTTGACTATAAGAGCAGTCATTATTCGCT
CTGAATAATTATGTTGACTTCGTGCTAATTTGCCTTCTCTGGTGCTTGCT
GCGTGCGTTCGTGACCGTTTGGTGTGGCTCGGCGTCACCTCTTTGACATC
GCCACCTTCCGACAGAACAAATGGCGCGAGGGCGGCAAATGCAGGGGTAG
TGCGCATGTCCTCTGGGTTACCTCCCGACTTCGATCCTTTGTCGCCCAGC
CTGGACCATTTATCCATCATCGACGCGGCTAGCCAGGGGCGTGCTCAGCC
AAGGGTAAGCTCTTATCCTCCATGACGTACATGGTCGGAAGCATACACGA
GGCTTTGTGCCGACGTGCGCTGCCAACACCATCTTTCGGCCTCGAGAATC
AACAACGTTCGACCTTTTCCATTGAAAATATGCTGTCAAGTTAGTTGGAA
AGTGAGCCCTTTGGGCAGGTTTGTGTAGTTGAATGTTTTCTGTCCATTTT
AATCGCTGAAAATCTACGCCAGGGGTGGTGTGTGATGCATATTAATACCT
GCCACAGTGGGAATCGGTGGGGAGCACCTGGAGTCAAGGCTGTCTTCCCG
ATTCCGTAGCGTACGCGCCCGCTTGATAAGTGTCCACGTTGATCGCTCGT
GCGTGAATGCCGGCACCGTCAAGCCAAGCGCTGCAATCCATGAAAGTTTT
CGTTTTTGAACGCTAAGCTGATTAATGACGGTCACGATACATCGATAACC
TTTGCAATTCCAGCGTAGCCTACGTGACCCTTGTGTAAAACTCCCATTTC
CTCTTCGTAGCTGTCTTCAACTTGTCTGTTCTCAAGAAAACCCATGACTG
GGAGCTTGCGAGTAGACCGTTGTGTCCACAGATCTTGACTAAATAGATCT
AACGTTGCAAGTTCCAGAGCACCCTGCACCGCGACTTCAATTACCAAACT
CAATAATTCGAAATTTACGAAGAAGGGAGGCTATTTTCCGTACAGCATAC
TTGAGCAACGAAACTAGCCACCACGGTCAAACCCTCAATTTCACACGTCA
AGGTTCTCGTGGTGTTAGATGAGCTCTCAACCTGAAGGTAGACGCTGTCG
TCACCAAGTGTTGTGCTTGTCGTGTTTCACTGTTGTATCACAATTCTCCA
CGTGACCTTCGACGCTTCTAAAACCAGAGCTTTGCAAAACCAGGGGTACT
TGGCATTCCCCAACCATGGTTACCTTCATTCTTGATGTTGTTTGCCACGT
ACGACACGACGTTAAAGCTTTTTTGTCGTCCATTTCGTATGTTGTGTATT
ATGCCCGGTATCGTTATCCGCGCTACGTGACGCGTTGCAGATGATCGGAG
GGGCAGGCGGCGTGTCAGCCGACGGACACCACCGTGACTCGGACGGGGCC
AGGGTCGGGCCTCCACCCGACCTGCCGTCTCTTCTGCTGCACAACCGTAT
CGTGTACTTGGGCATGCCCCTCGTACCCGCGGTTACGGAGCTCATCATCG
CCGAGGTGAGCACCCCACTACTGGCATTGTGTGCGACGTGGGGGTCATAC
TACTAATTTTTACGTCTAGGTGTGGAATCAGTCACTCAGCAATTTTAACA
GGGCTGAGGATACCTCTATTGTAGATTATCGAATTATGGTTGTAGGTGTT
TGTGCAACAGGCCCCCTTGCTGTCCTTGGATCATTTCCCGTGGCGTTCCT
GTTTTGGAAAAGTATATGAGGGGTGATATTACCTGTCAATAGTCAGCTCG
CTAGACTGCAATAGGTGGAGAGCAAATCAAGTAACGCCCTCTCGGATTGT
ATGTCTACCGCAGCATGCCTGGAATTATTTGCGTGATGTAGTAGCGCCCC
TGCACTCTGATGGCTACTCATCCGTCTGGAAGAAGGTCGGCCTTGTGTGA
CGCGGAAAACTGTGAATGACGAACGCCTGTGTCAACAATGGTTACCCATG
CATTTTCCGTGGTTTCTATTTTTGCCAGCTGTTGTACCGAAATTACGACC
CTTGAATTGCAAAGGTATTGTTTTTGTTCCTCCCAGTCTTGCAGAAATTG
GTGGCACGATTACAATCGGTTGTACAGTATTTTTTATTTGCCCACGTACG
TCCCGTGAATTTTTGTTGAGCAAGCTGTTGTACCTGAACTACGAGTCGGC
GACTAAGCCGGTGTACATGTATATCAACACGCCGGGAACCTCGACGCCGG
ACGGGAGAGCGATCGGGTTCGAGACGGAAGCGTTTGCCATCAGCGACACT
ATGAACTACATCAAGCCGCCGGTGTACACTATTGGGGTGGGACAGGTGCG
ATGAAACAAGCGGGAGACTGCCAACTCTCGGACGTTTTCTGCGTTTGTTG
CTCTCTTTTCGTCCAAGATTTTGTAGTTTTATTTTGTCGTAATGTATTCC
GCTTGTGTCGTCATTTTGTTCGTCGTTGTGACAGATTTTCTCCCCTCTCT
CAGTGCCAGTATGTGCAAGGCACTGATGAACACGCGACAGCTTTTATTTT
TGCTGAAGCTGGTGTCTAGCACATTATACTCATCTTTGAGCATGCCCCCA
TTTGTTGCCCTGCCCCCATCTCGACCAGGCGTTCGGGCTAGGAGCCATGC
TTCTAGCTTCGGGGCAAAAGGGACACCGCTCGGCGCTGCCCAACGCGAGT
ATCATGCTGCAGCAGCCGCGCAGTATGGCCAGAGGACAGGCATCAGATAT
CGCCATTAAGGCCAAAGAGGTTAGTAAACCAAACCTGCTCATCTTCTTGC
CACCATCGCCGAGCAAAATATGGATATTTTTACCGACCGTAACGGACTTG
AGTGATCATGCCCTGTAGATGCCCTTGGTGATGGTGGGGGGGGGGGCAAT
CTCCATCATATCACGCTGCGTAACTCAGGGACAGTCCTGACCCGCGTGTG
CCGTTACACGGTGGTGGATATCCGCATTCGAAAAGTCCAAGGGGCGATTC
CTCCCTCCCCCTCCCCCCCGTTTTCCCGTTTCGATTTTATTTCATTACTG
TATAAGGTCCCAATTTGCAACGTACTTCGCGTTTGCACCTTTGAATTCTC
ATGCTGCGGTACAAATTGCATTTCAAATATCATCCATGACTCTGAAAGGA
GATTACGCTGTGAGGGCATTTGCTCAAGAGAGGTGTGAGTATTTTTGGGT
GCAATCAAGGGGACTCGCATCTCAGTTCTGAAGCCATGAACCTCGAACCG
TTTTTAGCCTCAAAAAAGAGGGGTAGAGGGGATAATATGGCCCGTACCCC
CCTTTTTTTATACATGCATGATTTATAAAATACCATTTTTATTCACTTAC
GTGGGCTGTATACGGCACTATTTGTGGGAAGCGGCAAGCTTGTGATAGCG
GGTCTGAGCGACTAGTGTGTTGACAAATAAGATCTCGTCGCGTGCACAGA
TGCCTGCGCAGCCATCTGTTGGCTGTTTCTGGAGGGTATCCCATGCTATA
CAGTACAATATTGAAGTAAGTGCTCAAATAAGTAGTTATTAATCCTCGCC
GCCTGCTGCAGGATGCTTGTAACTGAGTTTCGGATGATATGACCGATATA
GCTTACCTGCGGTGGGCTTGCCCGCGAGCATTAGCCAATACTGTCAAGAC
GGTGAAGAAACCGATTTTAGCTCCGAAAAGTGAGCGGAGAGGGGGTAGTG
CGCATCGTCTCAGAAAAAAAGTCATCGTCCCCCTCGCCGCAATTCCAAGT
TTCTGTCAACACGAATCTCGCCCCGTTTTCATTTCTCAGAAATCTGTTTG
GATGCATGTGCTCCGCGAAGAACATTCACACTTTTTGTCGGTGTTACATG
CCTTTAAAAGGTGGGAATCAGGGAACACAGTTTTTCCGGTGTGCGAACGA
CAACCTGGATACGGAAAAAAAAAAAAATCGGGCGTTACTAAAAGCGCCCC
TACAAGAGAGACTTCATACATCAGCAGCTACGTCTGCGGTGTTTTCATCC
ATGACACGATGGCTTGAGTATATATCTACCTATCGTGGACACACAAACAT
GGTGCGCAGTTGCTTCACACGTTGAGCATGTACTGATATATACTGGTTTT
TGTCGGGACGATGTTTGGCGTTGGATTCTTGTCTCAGGTGATGTCCAACA
GGAAGACTGCCACGCAGATGCTTGCGGAGGCGTGCGGGAAGCCCTTCGAT
GAGGTGCTGATAGACTCATCAAGAACCTTTTACATGTCGCCTGACGAGGC
CGTCACATACGGACTCATCGACAGGGTAAGGAATTGGTCACTATTAGGGT
TGAGCCGCACCTGAAGCAATATGTTCGTCCAAGTAATTTCTGTCGAAGAA
TTCTTGCTTTCGGAAGTGAAGGGTATTCCTGGTCACTGCTCTTCGGGGCA
AGAGCGACGAGGGGGGGATAACTTTGTCAGCACCTCGTTTGAAACCGACT
CTTGATATTTCATGTATCTGTGATGTATTGCTCTAATGATTGTGGTGTAT
TTGCGAGGTGATGGATTCATTACTTCGAGGGGAAGTGGGCAAATGTTTCT
TGAAACCAACTCATTGTACAGGCTGGGTCTACCAACAGAGACCAACAACA
TCTCATGGGCATTTCTCGCTTGGTGTTTTTTAAAGTTTAGACCTGAAAAT
TTTAGGGTAGGTGCGTGTCAAAATTACGGAGACTTCTGTTGATATTACCT
TCTAAATAACTTTTTCCCGAAAATAATGGCTCTTGAATGAATTCAAGGTT
CAAAGATCCCTATTTATCTTCGAAAAAAATAATGAATCAAAGGGTATCAT
CATTGGAGGCCTTAAAAAAATTGATGCGCACCTACCCTTCATAATTTCAG
GTCCAAACCCCAAAAAACCGAGTGAGAAATGCCCGTTTTGTAGAAGTACT
ATGTACGTCCTAATCCCATCCGAAAGTGTTAATATTATACCTCCATTTTG
CTCCAGCCATAACTTTGGAACGGTGGCAAGTTGGGAGCTCAAACCGGTAT
CGCGGTTTTCGTCGTGATATGAGTAATACGCACACCCATTTTGATAACAA
TCGGGCATATATGTGACATACTTGACTTTTATAACAACACGTTTGGAAAA
TAACCGCTAGCAGTTCATATTTCGTATCGTCATATACTTTGAATGTTTGA
AAGTACCCGGATTGCCAATCAGAGCGCGCGGCGCACTCCGTGGTTCTTCC
ATGGTTGCAGGTAGTCTCACGTTTGTGGTAGCTTTCGCTATGGATGGTGA
CATTTGGCCTGGGGAACGTTTCGGTCATAGCCGGATCCCAACCGTCGTGC
TATACTATTATCGTTCGACATGGTCCTGAATCAAGCGCCTTGAAAAAGAT
CCGCATGCCAAGCAGCCCCTGATGGATTTCCACTGCCTCCTATCCATGTG
ACGTGGTGTGTATGCTGTTCGTTTACAGGTGATGAAGCCAAAAACGCGCG
TCGCTGATACGCCTAGCTTCCTCGACGCCTTGTCTGTGGGTCCATCGGGG
AAGAACGCGCGCTACTACGAAGACTAAAATAAAAATGCTCCATGCACAAG
ATTGGCAAATAAATATAGTACCTGCTGGGCGTCCTTGCGGCTTCTCTCAT
CAATAGCAGTGGCTGCCATATCTTCGTTCTTGGGTGTAAGACGGCAATTT
GGTGACTTTTGGGTTCAGATTTGGCCCGGCACTCGAATGAACGTGGCTTT
CGTTATTTTGAATACCTGTAGCGTTTCATCCCATGAGTGATGGAGATTGG
GGATGTGGGAATTGTCATTATACACTTTGGGGATGTGGGATTTGTCATTA
TACACTTTAATGTGTTGCAGGGGTTGTGTTCGCGGCTGCGGTGAAGGGGG
TGCGTTTGGGATCGGCTGTTGCCGCTTAGAACTGGCGTGGAGTAGATTGG
ATCGTGACTAATTGGATGGGGGATGAGTCGTGCTGTAGAAATTGAAAGGC
AGAAGTTGCTTGCACGGTGCGAAGATGGTATGGTAGACGGTATGGATTCG
ATAAGAATCAATGTTGAGGTTTGCGTTGCCGAACAGGAAGTCCAGGCGCG
TGTGAGAGGGAAGAGTCCGCTGGATTATGTATCTTAACCTCTTGTTTTCA
ATGGCCGCTTTCCGTACCCATATTATTTGTCAGGGCTACATCCCTAGAGA
CTAATTTTTGTTCATGGACTTTTGCTCTTTACAATCGATCGACACGCGTT
CGTTTTTGTTTTTTTTTAACCCCCGGAAGGTCGAGGCAAAAACCTTTTCC
TCTGCTTCCACTCTCGGAAGATTACTGAGTGTCTGCATTTCCTTTATAAT
GGATCAGAGTTATTTGTTCCTCTGCGGTGTAGGCGCCACCACCAGGTAGG
CAGTGTAGGAGTTTCACCTACTAAAAGACCTCTGACTAGACTTCCAGTCA
CGCGTTCGTACACTAAATTCTCGTGACCACGATGAATATTTCACCCTCGG
CTAGGGGATACTTTCACTAATCACGCGGATCTCGACCGATAAAGTAGAAA
TAAGAACGATACA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig407:12976..22538-

>mRNA_H-paniculata_contig407.10513.1 ID=mRNA_H-paniculata_contig407.10513.1|Name=mRNA_H-paniculata_contig407.10513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at H-paniculata_contig407:12976..22538- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAAACAAGACGAACAACGTCTTGTTGTGGTGTGGTCGTAGCGAC
TTGGTGCACCTTGTTAGTGGGCGGTGCCGAGGGCTTCATGGTGCCGCCGC
GGGCGTTCAGGGCAACCAGATGGTGAAAACAAGACGAACAACGTCTTGTT
GTGGTGTGGTCGTAGCGACTTGGTGCACCTTGTTAGTGGGCGGTGCCGAG
GGCTTCATGGTGCCGCCGCGGGCGTTCAGGGCAACCAGAACAAATGGCGC
GAGGGCGGCAAATGCAGGGGTAGTGCGCATGTCCTCTGGGTTACCTCCCG
ACTTCGATCCTTTGTCGCCCAGCCTGGACCATTTATCCATCATCGACGCG
GCTAGCCAGGGGCGTGCTCAGCCAAGGAACAAATGGCGCGAGGGCGGCAA
ATGCAGGGGTAGTGCGCATGTCCTCTGGGTTACCTCCCGACTTCGATCCT
TTGTCGCCCAGCCTGGACCATTTATCCATCATCGACGCGGCTAGCCAGGG
GCGTGCTCAGCCAAGGATGATCGGAGGGGCAGGCGGCGTGTCAGCCGACG
GACACCACCGTGACTCGGACGGGGCCAGGGTCGGGCCTCCACCCGACCTG
CCGTCTCTTCTGCTGCACAACCGTATCGTGTACTTGGGCATGCCCCTCGT
ACCCGCGGTTACGGAGCTCATCATCGCCGAGATGATCGGAGGGGCAGGCG
GCGTGTCAGCCGACGGACACCACCGTGACTCGGACGGGGCCAGGGTCGGG
CCTCCACCCGACCTGCCGTCTCTTCTGCTGCACAACCGTATCGTGTACTT
GGGCATGCCCCTCGTACCCGCGGTTACGGAGCTCATCATCGCCGAGCTGT
TGTACCTGAACTACGAGTCGGCGACTAAGCCGGTGTACATGTATATCAAC
ACGCCGGGAACCTCGACGCCGGACGGGAGAGCGATCGGGTTCGAGACGGA
AGCGTTTGCCATCAGCGACACTATGAACTACATCAAGCCGCCGGTGTACA
CTATTGGGGTGGGACAGCTGTTGTACCTGAACTACGAGTCGGCGACTAAG
CCGGTGTACATGTATATCAACACGCCGGGAACCTCGACGCCGGACGGGAG
AGCGATCGGGTTCGAGACGGAAGCGTTTGCCATCAGCGACACTATGAACT
ACATCAAGCCGCCGGTGTACACTATTGGGGTGGGACAGGCGTTCGGGCTA
GGAGCCATGCTTCTAGCTTCGGGGCAAAAGGGACACCGCTCGGCGCTGCC
CAACGCGAGTATCATGCTGCAGCAGCCGCGCAGTATGGCCAGAGGACAGG
CATCAGATATCGCCATTAAGGCCAAAGAGGCGTTCGGGCTAGGAGCCATG
CTTCTAGCTTCGGGGCAAAAGGGACACCGCTCGGCGCTGCCCAACGCGAG
TATCATGCTGCAGCAGCCGCGCAGTATGGCCAGAGGACAGGCATCAGATA
TCGCCATTAAGGCCAAAGAGGTGATGTCCAACAGGAAGACTGCCACGCAG
ATGCTTGCGGAGGCGTGCGGGAAGCCCTTCGATGAGGTGCTGATAGACTC
ATCAAGAACCTTTTACATGTCGCCTGACGAGGCCGTCACATACGGACTCA
TCGACAGGGTGATGTCCAACAGGAAGACTGCCACGCAGATGCTTGCGGAG
GCGTGCGGGAAGCCCTTCGATGAGGTGCTGATAGACTCATCAAGAACCTT
TTACATGTCGCCTGACGAGGCCGTCACATACGGACTCATCGACAGGGTGA
TGAAGCCAAAAACGCGCGTCGCTGATACGCCTAGCTTCCTCGACGCCTTG
TCTGTGGGTCCATCGGGGAAGAACGCGCGCTACTACGAAGACTAAGTGAT
GAAGCCAAAAACGCGCGTCGCTGATACGCCTAGCTTCCTCGACGCCTTGT
CTGTGGGTCCATCGGGGAAGAACGCGCGCTACTACGAAGACTAA
back to top