mRNA_H-paniculata_contig40639.10500.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40639.10500.1
Unique NamemRNA_H-paniculata_contig40639.10500.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40639.10500.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.860e-21
Identity = 56/115 (48.70%), Postives = 75/115 (65.22%), Query Frame = 1 
Query:   10 GRTSQNAVNHLRYNADMVMLAHNDPGDGAGFTCNKRVQVDDLNGKSSGSVREALPLMNDIPVESAKTDIPPRCCLFLVNRYSNMREAVISLGAESNQIMETALDRARKVEVFVAS 354
            GR    A NHL+ + DMV+L HN   +GA FTCNKRV VDD  G  S +   ++ LM D+  E A TDI  R   FL+NRY++  + V SL AE + ++E AL+R+R+VEVFVA+
Sbjct:  437 GRPPIRAENHLKNHLDMVLLIHN---EGATFTCNKRVTVDDPFGFGSDA-SPSMQLMTDVEYEGAATDIVMRPLHFLINRYTHAGDTVASLSAERHNVVEAALERSRRVEVFVAN 547
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BLAST of mRNA_H-paniculata_contig40639.10500.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 9.590e-7
Identity = 37/112 (33.04%), Postives = 53/112 (47.32%), Query Frame = 1 
Query:   61 VMLAHNDPGDGAG--FTCNKRVQVDDLNGK-----SSGSV-------REALPLMNDIPVESAKTDIPPRCCLFLVNRYSNMREAVISLGAESNQIMETALDRARKVEVFVAS 354
            ++  HN  GDG G  FTCN  V      GK     S GS        R   PLM D+P +            F + R++   + V+S+ AES+ ++E AL+  RKVE F+ +
Sbjct:  744 IVAHHNASGDGGGMNFTCNDTVTPQSFTGKLSAGSSDGSTWSTASGRRIPSPLMGDVPHKGVTRGYHDNVVQFAIQRWTKAGDTVVSMHAESDGVVEGALNLGRKVEAFLVA 855
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BLAST of mRNA_H-paniculata_contig40639.10500.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.330e-6
Identity = 36/112 (32.14%), Postives = 53/112 (47.32%), Query Frame = 1 
Query:   61 VMLAHNDPGDGAG--FTCNKRVQVDDLNGK-----SSGSV-------REALPLMNDIPVESAKTDIPPRCCLFLVNRYSNMREAVISLGAESNQIMETALDRARKVEVFVAS 354
            ++  HN  GDG G  FTCN  V      G+     S GS        R   PLM D+P +            F + R++   + V+S+ AES+ ++E AL+  RKVE F+ +
Sbjct:  243 IVAHHNGCGDGGGMNFTCNDTVTPQSFTGRRSAGSSDGSTWSTASGRRIPSPLMGDVPRKGVTRGYHDNVVQFAIQRWTKAGDTVVSMHAESDGVVECALNLGRKVEAFLVA 354
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40639.10500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LBJ9_9PHAE1.860e-2148.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK41_9PHAE9.590e-733.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ29_ECTSI2.330e-632.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40639contigH-paniculata_contig40639:125..828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930243.2731397-CDS-H-paniculata_contig40639:124..3721622930243.2731397-CDS-H-paniculata_contig40639:124..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40639 125..372 +
1691481207.1098814-CDS-H-paniculata_contig40639:124..3721691481207.1098814-CDS-H-paniculata_contig40639:124..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40639 125..372 +
1622930243.2946875-CDS-H-paniculata_contig40639:722..8281622930243.2946875-CDS-H-paniculata_contig40639:722..828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40639 723..828 +
1691481207.1211047-CDS-H-paniculata_contig40639:722..8281691481207.1211047-CDS-H-paniculata_contig40639:722..828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40639 723..828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40639.10500.1prot_H-paniculata_contig40639.10500.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40639 125..828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40639.10500.1

>prot_H-paniculata_contig40639.10500.1 ID=prot_H-paniculata_contig40639.10500.1|Name=mRNA_H-paniculata_contig40639.10500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MRAGRTSQNAVNHLRYNADMVMLAHNDPGDGAGFTCNKRVQVDDLNGKSS
GSVREALPLMNDIPVESAKTDIPPRCCLFLVNRYSNMREAVISLGAESNQ
IMETALDRARKVEVFVAS
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mRNA from alignment at H-paniculata_contig40639:125..828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40639.10500.1 ID=mRNA_H-paniculata_contig40639.10500.1|Name=mRNA_H-paniculata_contig40639.10500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=704bp|location=Sequence derived from alignment at H-paniculata_contig40639:125..828+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACGTTACAA
TGCAGACATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGCT
TCACGTGCAACAAACGTGTACAGGTGGACGATCTCAACGGCAAAAGCAGC
GGTTCCGTCAGAGAAGCCCTCCCATTGATGAACGACATACCTGTGGAGAG
TGCCAAGACGGATATACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGGT
GAAAATAGTTGTTACAACTTAAACAGGGTTGTGGTTCATGTTTGCACATT
CTTCATTTTAAGGTTGCATGTTTTTCTCTTCTATGTGATTGTTGTTGTTA
TTGGAGCGCTCTACAACCATCACGAGCATAATAGTAAGTAACTAGAGAAT
TGATGTTGGGGCATCATTGTGACCATCTAAACAAAGTCTTGTGTTGACAC
GCCATACAGACACCACCACGAGATACCTACTATATGACAATGAGGTATAC
TGGTTAGTCTTTGGTCATGTACTTGACAAAAATCCCTTCTTTTTGCCAAC
TTATCGTCAGTACTGCTGATAATGCCTTGTTCTTATTTGGTATGGCAGGT
ACTCCAACATGAGAGAGGCAGTCATATCGCTGGGCGCTGAGAGTAATCAA
ATTATGGAGACGGCGCTTGATCGTGCGAGAAAGGTTGAGGTCTTCGTGGC
TTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig40639:125..828+

>mRNA_H-paniculata_contig40639.10500.1 ID=mRNA_H-paniculata_contig40639.10500.1|Name=mRNA_H-paniculata_contig40639.10500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig40639:125..828+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACGTTACAA
TGCAGACATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGCT
TCACGTGCAACAAACGTGTACAGGTGGACGATCTCAACGGCAAAAGCAGC
GGTTCCGTCAGAGAAGCCCTCCCATTGATGAACGACATACCTGTGGAGAG
TGCCAAGACGGATATACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGAT
GAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACGTTACAATG
CAGACATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGCTTC
ACGTGCAACAAACGTGTACAGGTGGACGATCTCAACGGCAAAAGCAGCGG
TTCCGTCAGAGAAGCCCTCCCATTGATGAACGACATACCTGTGGAGAGTG
CCAAGACGGATATACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGGTAC
TCCAACATGAGAGAGGCAGTCATATCGCTGGGCGCTGAGAGTAATCAAAT
TATGGAGACGGCGCTTGATCGTGCGAGAAAGGTTGAGGTCTTCGTGGCTT
CTGTACTCCAACATGAGAGAGGCAGTCATATCGCTGGGCGCTGAGAGTAA
TCAAATTATGGAGACGGCGCTTGATCGTGCGAGAAAGGTTGAGGTCTTCG
TGGCTTCT
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