mRNA_H-paniculata_contig40631.10499.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40631.10499.1
Unique NamemRNA_H-paniculata_contig40631.10499.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig40631.10499.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 6.080e-42
Identity = 81/137 (59.12%), Postives = 100/137 (72.99%), Query Frame = 2 
Query:  896 GEIISYLKRTKDLGFMFERGSALHLSVYVDADYADRSNWRCSVSGVAVMLGGSVVSTTSKTQHCVALSTSEAEYVAMAQGVKTTLFTRAVLELLQPQHSGREVMMFEDNQAAITTAENPTSTGRSKHIDVKYHFIRE 1306
            G I+SYL  T DLG  + RGS L L VYVDA YADR   R SV+G+AV +GG+VVS  SKTQ  V+LSTSEAEY+A  +GVK  LF RAVL  + P+ SG ++ + EDNQ AI+  +NP S+ RSKHIDV++HFIRE
Sbjct:  192 GSILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRE 328
[Close]
BLAST of mRNA_H-paniculata_contig40631.10499.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 5.620e-39
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2 
Query:  899 EIISYLKRTKDLGFMFERGSALHLSVYVDADYADRSNWRCSVSGVAVMLGGSVVSTTSKTQHCVALSTSEAEYVAMAQGVKTTLFTRAVLELLQPQHSGREVMMFEDNQAAITTAENPTSTGRSKHIDVKYHFIRE 1306
            +I+SYL  T DLG  + RGS L L VYVDA YADR   R SV+G+AV +GG+VVS  SKTQ  V+LSTSEAEY+A  +GVK  LF RAVL  + P+ SG ++ + EDNQ AI+  +NP S+ RSKHIDV++HFIRE
Sbjct: 1068 QILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRE 1203
[Close]
BLAST of mRNA_H-paniculata_contig40631.10499.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 6.290e-39
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2 
Query:  899 EIISYLKRTKDLGFMFERGSALHLSVYVDADYADRSNWRCSVSGVAVMLGGSVVSTTSKTQHCVALSTSEAEYVAMAQGVKTTLFTRAVLELLQPQHSGREVMMFEDNQAAITTAENPTSTGRSKHIDVKYHFIRE 1306
            +I+SYL  T DLG  + RGS L L VYVDA YADR   R SV+G+AV +GG+VVS  SKTQ  V+LSTSEAEY+A  +GVK  LF RAVL  + P+ SG ++ + EDNQ AI+  +NP S+ RSKHIDV++HFIRE
Sbjct: 1621 QILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRE 1756
[Close]
BLAST of mRNA_H-paniculata_contig40631.10499.1 vs. uniprot
Match: A0A6H5J853_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J853_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.760e-38
Identity = 75/135 (55.56%), Postives = 98/135 (72.59%), Query Frame = 2 
Query:  899 EIISYLKRTKDLGFMFERGSALHLSVYVDADYADRSNWRCSVSGVAVMLGGSVVSTTSKTQHCVALSTSEAEYVAMAQGVKTTLFTRAVLELLQPQHSGREVMMFEDNQAAITTAENPTSTGRSKHIDVKYHFIR 1303
            +I+ YLK T+DLG  ++RGS L L+VYVDA YAD  + R SVSG+A  +GG+VVS  SKTQ  V LS++EAEY+A  +GVK  LF R VL  + P+ SG  + + EDNQ AI   +NP S+GR+KHIDV++HFIR
Sbjct:  115 KILGYLKETRDLGITYQRGSGLGLAVYVDASYADTEDKR-SVSGLATTVGGTVVSHGSKTQKIVCLSSTEAEYIAAGEGVKEALFVREVLSFVAPETSGSSIQVLEDNQGAIVLVQNPLSSGRTKHIDVRFHFIR 248
[Close]
BLAST of mRNA_H-paniculata_contig40631.10499.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 8.250e-38
Identity = 107/278 (38.49%), Postives = 155/278 (55.76%), Query Frame = 3 
Query:  111 GECDKAKARLVARGFSQQHDVDFLEAFAPMVAASSVKLVIAVAQ--------LDVKQAFIQASLDFEVSMKLPEGCGDTSGRIVRLSKATCGLKQAGRMW----SKRLVEVPGMAQSKSDPCVFRLEKRGVADMILCVHVDDVIVSGKSVECDSLLAALRTGFQTTR-GELKWY------LDEKISGLH-SRPAFCENLFSPRLRETSGNSIKHHGVSYSTAGYPFVLLLCDSPEGIFQEACALGCGELIWLSGMTRPDIASAVQAVERQAHNPTDRH 884
            G+ D  KARLVARGFSQ  +VD+  + +P  +++S+KL++AVA          DVKQA+  A+LD EV +KLP GCGD S +I +  +A  GLKQ+GR W    +  LVE  G  Q K+DPCVFR     V  MI+ ++VDD++V+G   +C+ LLA+L   F T   GE +W+       D +   L  S+ A+ +++   R    S + I       +T G        D   G +    A+G   ++W+S  +RPD++ AV+AV R AH P  RH
Sbjct:  796 GKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVE-NGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVE-RFDVKSTSRIP------ATPGADLGPKREDEEGGEWPVREAIG--SMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1063
[Close]
BLAST of mRNA_H-paniculata_contig40631.10499.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 8.990e-38
Identity = 107/278 (38.49%), Postives = 155/278 (55.76%), Query Frame = 3 
Query:  111 GECDKAKARLVARGFSQQHDVDFLEAFAPMVAASSVKLVIAVAQ--------LDVKQAFIQASLDFEVSMKLPEGCGDTSGRIVRLSKATCGLKQAGRMW----SKRLVEVPGMAQSKSDPCVFRLEKRGVADMILCVHVDDVIVSGKSVECDSLLAALRTGFQTTR-GELKWY------LDEKISGLH-SRPAFCENLFSPRLRETSGNSIKHHGVSYSTAGYPFVLLLCDSPEGIFQEACALGCGELIWLSGMTRPDIASAVQAVERQAHNPTDRH 884
            G+ D  KARLVARGFSQ  +VD+  + +P  +++S+KL++AVA          DVKQA+  A+LD EV +KLP GCGD S +I +  +A  GLKQ+GR W    +  LVE  G  Q K+DPCVFR     V  MI+ ++VDD++V+G   +C+ LLA+L   F T   GE +W+       D +   L  S+ A+ +++   R    S + I       +T G        D   G +    A+G   ++W+S  +RPD++ AV+AV R AH P  RH
Sbjct: 1175 GKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVE-NGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVE-RFDVKSTSRIP------ATPGADLGPKREDEEGGEWPVREAIG--SMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1442
[Close]
BLAST of mRNA_H-paniculata_contig40631.10499.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 9.090e-38
Identity = 107/278 (38.49%), Postives = 155/278 (55.76%), Query Frame = 3 
Query:  111 GECDKAKARLVARGFSQQHDVDFLEAFAPMVAASSVKLVIAVAQ--------LDVKQAFIQASLDFEVSMKLPEGCGDTSGRIVRLSKATCGLKQAGRMW----SKRLVEVPGMAQSKSDPCVFRLEKRGVADMILCVHVDDVIVSGKSVECDSLLAALRTGFQTTR-GELKWY------LDEKISGLH-SRPAFCENLFSPRLRETSGNSIKHHGVSYSTAGYPFVLLLCDSPEGIFQEACALGCGELIWLSGMTRPDIASAVQAVERQAHNPTDRH 884
            G+ D  KARLVARGFSQ  +VD+  + +P  +++S+KL++AVA          DVKQA+  A+LD EV +KLP GCGD S +I +  +A  GLKQ+GR W    +  LVE  G  Q K+DPCVFR     V  MI+ ++VDD++V+G   +C+ LLA+L   F T   GE +W+       D +   L  S+ A+ +++   R    S + I       +T G        D   G +    A+G   ++W+S  +RPD++ AV+AV R AH P  RH
Sbjct: 1195 GKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVE-NGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVE-RFDVKSTSRIP------ATPGADLGPKREDEEGGEWPVREAIG--SMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1462
[Close]
BLAST of mRNA_H-paniculata_contig40631.10499.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 9.210e-38
Identity = 107/278 (38.49%), Postives = 155/278 (55.76%), Query Frame = 3 
Query:  111 GECDKAKARLVARGFSQQHDVDFLEAFAPMVAASSVKLVIAVAQ--------LDVKQAFIQASLDFEVSMKLPEGCGDTSGRIVRLSKATCGLKQAGRMW----SKRLVEVPGMAQSKSDPCVFRLEKRGVADMILCVHVDDVIVSGKSVECDSLLAALRTGFQTTR-GELKWY------LDEKISGLH-SRPAFCENLFSPRLRETSGNSIKHHGVSYSTAGYPFVLLLCDSPEGIFQEACALGCGELIWLSGMTRPDIASAVQAVERQAHNPTDRH 884
            G+ D  KARLVARGFSQ  +VD+  + +P  +++S+KL++AVA          DVKQA+  A+LD EV +KLP GCGD S +I +  +A  GLKQ+GR W    +  LVE  G  Q K+DPCVFR     V  MI+ ++VDD++V+G   +C+ LLA+L   F T   GE +W+       D +   L  S+ A+ +++   R    S + I       +T G        D   G +    A+G   ++W+S  +RPD++ AV+AV R AH P  RH
Sbjct: 1338 GKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVE-NGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVE-RFDVKSTSRIP------ATPGADLGPKREDEEGGEWPVREAIG--SMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1605
[Close]
BLAST of mRNA_H-paniculata_contig40631.10499.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.550e-37
Identity = 75/135 (55.56%), Postives = 99/135 (73.33%), Query Frame = 2 
Query:  899 EIISYLKRTKDLGFMFERGSALHLSVYVDADYADRSNWRCSVSGVAVMLGGSVVSTTSKTQHCVALSTSEAEYVAMAQGVKTTLFTRAVLELLQPQHSGREVMMFEDNQAAITTAENPTSTGRSKHIDVKYHFIR 1303
            +I++YLK T+DLG  ++RGS L L VYVDA YAD  + R SVSG+A  +GG+V+S  SKTQ  V+LS++EAEY+A  +GVK  LF RAVL  + P+ SG  + + EDNQ A+   +NP S+ RSKHIDV+YHFIR
Sbjct:  204 KILAYLKETRDLGITYKRGSGLGLEVYVDASYADAEDRR-SVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIR 337
[Close]
BLAST of mRNA_H-paniculata_contig40631.10499.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.690e-37
Identity = 75/135 (55.56%), Postives = 97/135 (71.85%), Query Frame = 2 
Query:  899 EIISYLKRTKDLGFMFERGSALHLSVYVDADYADRSNWRCSVSGVAVMLGGSVVSTTSKTQHCVALSTSEAEYVAMAQGVKTTLFTRAVLELLQPQHSGREVMMFEDNQAAITTAENPTSTGRSKHIDVKYHFIR 1303
            +I+ YLK T+DLG  ++RGS L L+VYVDA YAD  + R SVSG+A  +GG+VVS  SKTQ  V+LS +EAEY+A   GVK  LF RAV   + P+ SG  + + EDNQ AI   +NP S+GR+KHIDV++HFIR
Sbjct:   81 KILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIR 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40631.10499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9K6_9PHAE6.080e-4259.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKS3_9PHAE5.620e-3958.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE6.290e-3958.82Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J853_9PHAE1.760e-3855.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE8.250e-3838.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE8.990e-3838.49Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE9.090e-3838.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE9.210e-3838.49Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5L589_9PHAE1.550e-3755.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPN5_9PHAE1.690e-3755.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40631contigH-paniculata_contig40631:323..1855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score94.4
Seed ortholog evalue7.6e-17
Seed eggNOG ortholog6334.EFV48939
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,40FC4@6231,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
Exons4
Model size1306
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40631.10499.1prot_H-paniculata_contig40631.10499.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40631 742..1658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930243.1164653-UTR-H-paniculata_contig40631:322..7411622930243.1164653-UTR-H-paniculata_contig40631:322..741Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40631 323..741 -
1691481207.0380788-UTR-H-paniculata_contig40631:322..7411691481207.0380788-UTR-H-paniculata_contig40631:322..741Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40631 323..741 -
1622930243.2201216-UTR-H-paniculata_contig40631:1658..18551622930243.2201216-UTR-H-paniculata_contig40631:1658..1855Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40631 1659..1855 -
1691481207.098144-UTR-H-paniculata_contig40631:1658..18551691481207.098144-UTR-H-paniculata_contig40631:1658..1855Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40631 1659..1855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930243.1327403-CDS-H-paniculata_contig40631:741..8951622930243.1327403-CDS-H-paniculata_contig40631:741..895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40631 742..895 -
1691481207.048467-CDS-H-paniculata_contig40631:741..8951691481207.048467-CDS-H-paniculata_contig40631:741..895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40631 742..895 -
1622930243.1543677-CDS-H-paniculata_contig40631:953..10891622930243.1543677-CDS-H-paniculata_contig40631:953..1089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40631 954..1089 -
1691481207.060821-CDS-H-paniculata_contig40631:953..10891691481207.060821-CDS-H-paniculata_contig40631:953..1089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40631 954..1089 -
1622930243.1739364-CDS-H-paniculata_contig40631:1236..15941622930243.1739364-CDS-H-paniculata_contig40631:1236..1594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40631 1237..1594 -
1691481207.0693824-CDS-H-paniculata_contig40631:1236..15941691481207.0693824-CDS-H-paniculata_contig40631:1236..1594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40631 1237..1594 -
1622930243.1996636-CDS-H-paniculata_contig40631:1616..16581622930243.1996636-CDS-H-paniculata_contig40631:1616..1658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40631 1617..1658 -
1691481207.0815325-CDS-H-paniculata_contig40631:1616..16581691481207.0815325-CDS-H-paniculata_contig40631:1616..1658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40631 1617..1658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40631.10499.1

>prot_H-paniculata_contig40631.10499.1 ID=prot_H-paniculata_contig40631.10499.1|Name=mRNA_H-paniculata_contig40631.10499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
MVAASSVKLVIAVAQLDVKQAFIQASLDFEVSMKLPEGCGDTSGRIVRLS
KATCGLKQAGRMWSKRLVEVPGMAQSKSDPCVFRLEKRGVADMILCVHVD
DVIVSGKSVECDSLLAALRTGFQTTRGELKWYLDEKISGLHSRPAFCENL
FSPRLRETSGNSIKHHGVSYSTAGYPFVLLLCDSPEGIFQEACALGCGEL
IWLSGMTRPDIASAVQAVERQAHNPTDRH*
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mRNA from alignment at H-paniculata_contig40631:323..1855-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40631.10499.1 ID=mRNA_H-paniculata_contig40631.10499.1|Name=mRNA_H-paniculata_contig40631.10499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1533bp|location=Sequence derived from alignment at H-paniculata_contig40631:323..1855- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTTTGAGGGCTTGGAGAGCCTCAAAGCTTGGAATTATGTTGACAATGT
GCGAAAGGGTTCCAAGGTGGTCAGTGCTAGGTGGATATTTGCATGGAAAA
ATGATGAGCAGGGGAATGCGACAAAGCTAAGGCAAGGCTCGTAGCTCGAG
GGTTTAGCCAGCAACATGACGTTGATTTTCTCGAGGCGTTTGCTCCTATG
GTAGCCGCTTCAAGTGTCAAGCTGGTGATTGCTGTTGCTGTTGAAAACGA
CTGGAGACTAGCAATTAGATGTGAAACAGGCCTTTATTCAGGCGAGTTTA
GATTTCGAGGTGTCCATGAAGCTTCCAGAGGGTTGCGGAGACACAAGCGG
TAGAATAGTTAGGCTGAGTAAGGCCACGTGTGGGCTCAAGCAGGCTGGAA
GGATGTGGTCAAAGCGCCTCGTAGAAGTACCTGGCATGGCGCAATCGAAG
TCTGACCCTTGCGTGTTCAGGCTGGAGAAACGTGGAGTGGCAGACATGAT
TCTGTGTGTTCATGTAGATGATGTGATTGTTTCTGGTAAGAGTGTGGAGT
GTGATTCCCTGCTTGCAGCGTTAAGGACGGGGTTCCAAACCACGCGAGGC
GAGCTCAAGTGGTACCTAGGTAGCACATTTTGATGTGACATGGTGAGGGG
GGTTGTTCGCATCATGCAATGGACATTCATTGATACTGTCATCAAAAGTT
TTGGCGTAGAAACCGAGTCTGACCTTCCTACATCTCAGCAGGCAGAACTT
GGTCCTAGGAGGGTAGATGAGAAGATCTCTGGATTGCATTCTCGCCCTGC
CTTCTGCGAAAATCTATTTTCCCCTAGACTCAGAGAAACGTCCGGAAATA
GTATTAAGCACCACGGGGTTTCATATTCTACTGCAGGATATCCATTTGTT
TTGTAACTTTTACTATGCTATATAAACACCATAATCGGAACTCATATGCT
TGATTCTCAGACTCCTGTGCGACTCCCCAGAGGGAATTTTCCAAGAAGCC
TGTGCGCTCGGTTGTGGGGAGTTGATATGGTTAAGTGGCATGACGAGACC
TGATATAGCCAGTGCGGTACAAGCAGTAGAGAGGCAAGCCCACAATCCTA
CGGACAGGCACTGAAAAGCGGCGGTGAAATAATCTCGTATCTCAAAAGAA
CGAAAGACTTGGGGTTCATGTTCGAAAGGGGTAGTGCGCTTCATCTGTCA
GTCTATGTAGACGCAGATTATGCAGACAGGTCCAACTGGAGGTGTTCGGT
GTCAGGCGTGGCAGTAATGTTAGGGGGGAGTGTAGTAAGCACTACTAGCA
AAACACAACACTGCGTGGCACTTTCCACTAGTGAGGCAGAGTACGTAGCT
ATGGCGCAAGGGGTTAAGACAACACTTTTCACAAGAGCCGTGCTAGAGTT
GTTGCAGCCACAACATTCTGGTAGGGAGGTTATGATGTTTGAAGACAACC
AGGCGGCAATTACTACGGCTGAAAATCCCACTAGTACAGGCAGGAGCAAG
CACATAGATGTAAAGTATCATTTCATTCGAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig40631:323..1855-

>mRNA_H-paniculata_contig40631.10499.1 ID=mRNA_H-paniculata_contig40631.10499.1|Name=mRNA_H-paniculata_contig40631.10499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig40631:323..1855- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGCCGCTTCAAGTGTCAAGCTGGTGATTGCTGTTGCTATGGTAGC
CGCTTCAAGTGTCAAGCTGGTGATTGCTGTTGCTCAATTAGATGTGAAAC
AGGCCTTTATTCAGGCGAGTTTAGATTTCGAGGTGTCCATGAAGCTTCCA
GAGGGTTGCGGAGACACAAGCGGTAGAATAGTTAGGCTGAGTAAGGCCAC
GTGTGGGCTCAAGCAGGCTGGAAGGATGTGGTCAAAGCGCCTCGTAGAAG
TACCTGGCATGGCGCAATCGAAGTCTGACCCTTGCGTGTTCAGGCTGGAG
AAACGTGGAGTGGCAGACATGATTCTGTGTGTTCATGTAGATGATGTGAT
TGTTTCTGGTAAGAGTGTGGAGTGTGATTCCCTGCTTGCAGCGTTAAGGA
CGGGGTTCCAAACCACGCGAGGCGAGCTCAAGTGGTACCTAGCAATTAGA
TGTGAAACAGGCCTTTATTCAGGCGAGTTTAGATTTCGAGGTGTCCATGA
AGCTTCCAGAGGGTTGCGGAGACACAAGCGGTAGAATAGTTAGGCTGAGT
AAGGCCACGTGTGGGCTCAAGCAGGCTGGAAGGATGTGGTCAAAGCGCCT
CGTAGAAGTACCTGGCATGGCGCAATCGAAGTCTGACCCTTGCGTGTTCA
GGCTGGAGAAACGTGGAGTGGCAGACATGATTCTGTGTGTTCATGTAGAT
GATGTGATTGTTTCTGGTAAGAGTGTGGAGTGTGATTCCCTGCTTGCAGC
GTTAAGGACGGGGTTCCAAACCACGCGAGGCGAGCTCAAGTGGTACCTAG
ATGAGAAGATCTCTGGATTGCATTCTCGCCCTGCCTTCTGCGAAAATCTA
TTTTCCCCTAGACTCAGAGAAACGTCCGGAAATAGTATTAAGCACCACGG
GGTTTCATATTCTACTGCAGGATATCCATTTGTTTTATGAGAAGATCTCT
GGATTGCATTCTCGCCCTGCCTTCTGCGAAAATCTATTTTCCCCTAGACT
CAGAGAAACGTCCGGAAATAGTATTAAGCACCACGGGGTTTCATATTCTA
CTGCAGGATATCCATTTGTTTTACTCCTGTGCGACTCCCCAGAGGGAATT
TTCCAAGAAGCCTGTGCGCTCGGTTGTGGGGAGTTGATATGGTTAAGTGG
CATGACGAGACCTGATATAGCCAGTGCGGTACAAGCAGTAGAGAGGCAAG
CCCACAATCCTACGGACAGGCACTGAACTCCTGTGCGACTCCCCAGAGGG
AATTTTCCAAGAAGCCTGTGCGCTCGGTTGTGGGGAGTTGATATGGTTAA
GTGGCATGACGAGACCTGATATAGCCAGTGCGGTACAAGCAGTAGAGAGG
CAAGCCCACAATCCTACGGACAGGCACTGA
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