mRNA_H-paniculata_contig4061.10495.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4061.10495.1
Unique NamemRNA_H-paniculata_contig4061.10495.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4061.10495.1 vs. uniprot
Match: A0A6H5KHN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.020e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:   52 TSSAEVPVKA---REDLLSEWKRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLDSYVFLDVGWLAKVLEPVLNHK 273
            T+ AE  V A    EDL ++W+ A+     + +TV NP++ALEGAL+IRE++G+V+  +++VFLDV WLAK+L+P+LNHK
Sbjct:   17 TAGAEAQVYAGITAEDLRTKWQEAVEKLAKRKITVVNPDNALEGALSIREFDGSVVRHETFVFLDVVWLAKILKPLLNHK 96
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BLAST of mRNA_H-paniculata_contig4061.10495.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 9.140e-14
Identity = 33/66 (50.00%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   85 EDLLSEWKRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLDSYVFLDVGWLAKVLEPVLNHK 273
            E+L ++W   +R+   + + V NPE+ALEGAL+IRE++G+++  + +VFLDV WLA+VL+P+LNHK
Sbjct:  402 EELKAKWNETVRELAKRDIAVTNPENALEGALSIREFDGSLVRHEMFVFLDVVWLARVLKPLLNHK 467
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BLAST of mRNA_H-paniculata_contig4061.10495.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.260e-13
Identity = 33/67 (49.25%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:   82 REDLLSEWK---RAIRDKGLTVPNPESALEGALTIREYEGTVLSLDSYVFLDVGWLAKVLEPVLNHK 273
            R DL ++W     A+ + G+++ NP+ ALEGAL IRE+EG+++  ++YVFLDV WLA++L+P+LNH+
Sbjct:  540 RADLSTKWNDVVAALEEDGVSIVNPDHALEGALLIREHEGSLVRHETYVFLDVTWLAQILKPLLNHR 606
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BLAST of mRNA_H-paniculata_contig4061.10495.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.290e-13
Identity = 32/66 (48.48%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:   85 EDLLSEWKRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLDSYVFLDVGWLAKVLEPVLNHK 273
            E+L ++W+  + +   +G+TV N ++ALEGAL+IRE++G+++  D +VFLDV WLA++L+P+LNHK
Sbjct:  142 EELGTKWQGTVDELERRGITVTNAKNALEGALSIREFDGSLVRRDKFVFLDVVWLARILKPLLNHK 207
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BLAST of mRNA_H-paniculata_contig4061.10495.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.300e-13
Identity = 32/66 (48.48%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   85 EDLLSEWKRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLDSYVFLDVGWLAKVLEPVLNHK 273
            E+L + W+  + +   +G+TV N E+ALEGAL+IRE++G+++  + +VFLDV WLA++L+P+LNHK
Sbjct:  459 EELSARWQGTVDELGRRGITVTNAENALEGALSIREFDGSLVCHEKFVFLDVVWLARILKPLLNHK 524
[Close]
BLAST of mRNA_H-paniculata_contig4061.10495.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.400e-13
Identity = 32/66 (48.48%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   85 EDLLSEWKRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLDSYVFLDVGWLAKVLEPVLNHK 273
            E+L ++W+  +     +G+TV N E+ALEGAL+IRE++G+++  + +VFLDV WLA++L+P+LNHK
Sbjct:  628 EELSAKWQETVDGLGRRGITVTNAENALEGALSIREFDGSLVPHEKFVFLDVVWLARILKPLLNHK 693
[Close]
BLAST of mRNA_H-paniculata_contig4061.10495.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 8.110e-13
Identity = 30/66 (45.45%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   85 EDLLSEWKRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLDSYVFLDVGWLAKVLEPVLNHK 273
            E+L ++W+  + +   +G+TV N ++ALEGAL++RE++G+++  +++VFLDV WLA++L+P+LNHK
Sbjct:  315 EELGTKWQETVDELERRGITVTNAKNALEGALSVREFDGSLVRRENFVFLDVVWLARILKPLLNHK 380
[Close]
BLAST of mRNA_H-paniculata_contig4061.10495.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 8.110e-13
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:   85 EDLLSEWKRAI---RDKGLTVPNPESALEGALTIREYEGTVLSLDSYVFLDVGWLAKVLEPVLNHK 273
            EDL  +W+  +      G+TV N ++ALEGAL IRE++G+++  + ++FLDV WLAK+L+P+LNHK
Sbjct:  480 EDLSIKWQETVDGLERSGVTVTNAKNALEGALLIREFDGSLIRYEKFIFLDVVWLAKILKPLLNHK 545
[Close]
BLAST of mRNA_H-paniculata_contig4061.10495.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 8.180e-13
Identity = 32/66 (48.48%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   85 EDLLSEWKRA---IRDKGLTVPNPESALEGALTIREYEGTVLSLDSYVFLDVGWLAKVLEPVLNHK 273
            EDL ++W+ A   +  + +TV N ++ALEGAL IRE++G+++  +++VFLDV WLA++L+P+LNHK
Sbjct:  624 EDLRTKWQEAAVGLAGRDITVTNADNALEGALAIREFDGSLVRHETFVFLDVVWLARILKPLLNHK 689
[Close]
BLAST of mRNA_H-paniculata_contig4061.10495.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.110e-12
Identity = 31/66 (46.97%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:   85 EDLLSEWKRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLDSYVFLDVGWLAKVLEPVLNHK 273
            EDL  +W++ + +   +G+ V N ++ALEGAL+IRE++G+++  +++VFLDV WLA++L+P+LNHK
Sbjct:  430 EDLSKKWQKIVDELERRGIIVTNAKNALEGALSIREFDGSLVRHETFVFLDVLWLARILKPLLNHK 495
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4061.10495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5KHN7_9PHAE1.020e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L846_9PHAE9.140e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL89_ECTSI1.260e-1349.25LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L0H4_9PHAE4.290e-1348.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L650_9PHAE4.300e-1348.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJS7_ECTSI4.400e-1348.48LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K1K4_9PHAE8.110e-1345.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSZ8_9PHAE8.110e-1348.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUD0_ECTSI8.180e-1348.48LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7G431_ECTSI1.110e-1246.97LRR-GTPase of the ROCO family, incomplete sequence... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4061contigH-paniculata_contig4061:8054..10068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue6.6e-12
Seed eggNOG ortholog2880.D7FL89
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930242.7749043-CDS-H-paniculata_contig4061:8053..82321622930242.7749043-CDS-H-paniculata_contig4061:8053..8232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4061 8054..8232 +
1691481206.9532065-CDS-H-paniculata_contig4061:8053..82321691481206.9532065-CDS-H-paniculata_contig4061:8053..8232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4061 8054..8232 +
1622930242.7910428-CDS-H-paniculata_contig4061:9968..100681622930242.7910428-CDS-H-paniculata_contig4061:9968..10068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4061 9969..10068 +
1691481206.9630668-CDS-H-paniculata_contig4061:9968..100681691481206.9630668-CDS-H-paniculata_contig4061:9968..10068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4061 9969..10068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4061.10495.1prot_H-paniculata_contig4061.10495.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4061 8054..10068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4061.10495.1

>prot_H-paniculata_contig4061.10495.1 ID=prot_H-paniculata_contig4061.10495.1|Name=mRNA_H-paniculata_contig4061.10495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
RHTVPSTLAEDQVPSQQTSSAEVPVKAREDLLSEWKRAIRDKGLTVPNPE
SALEGALTIREYEGTVLSLDSYVFLDVGWLAKVLEPVLNHKGV
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mRNA from alignment at H-paniculata_contig4061:8054..10068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4061.10495.1 ID=mRNA_H-paniculata_contig4061.10495.1|Name=mRNA_H-paniculata_contig4061.10495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2015bp|location=Sequence derived from alignment at H-paniculata_contig4061:8054..10068+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCACACTGTCCCTTCAACGTTGGCGGAAGATCAAGTGCCATCACAGCA
GACGTCGAGCGCCGAAGTCCCCGTCAAGGCGCGCGAGGACCTGCTAAGTG
AGTGGAAGCGTGCGATTAGAGACAAAGGGCTGACTGTCCCGAACCCCGAG
AGCGCGTTGGAAGGGGCGCTTACCATCAGGTCTGATTTAAGTTCATGTCA
TGGGTACCGTATCCACGTAAGGTATCAATCTATGAAGGATATAGGCACAA
TTAATTTTCTATTCAGTTGAGCGTGACGCCCCGCAATGGTTCAATGGCGC
TGTACTGGGTGATGTGGGAATTGCGCCGAACGGTAGGAACAAGCTCGGGT
GATGGTCAAAATACACCACGGAGCAGACTAAATCCAAATATGTGCAATTT
CGAGCTTTTACCTGGGCAAGGGGCATATTATATACACGGAACAGGTAGCA
GCGGAGGTTTTGCAGTGCTGTTTTGGTGGCAAAGTCGTGGACAATTTGTT
GGTTTTAACAGCGAAATCTCTCTCAATTTTCCGCGACTACGTCTGAATTC
AGAGCACTCACCTATGATACGACGTTCGACGGACAATTGTCCAAATGTAT
CACATAGTTATTCCAACCGCGACCGAGAAAATGGCAAAAGAAATGGTTGC
TTGGTCGTTTTCTGTGTGATGGCTTTTACTCGACAATTCCCGATGAACAC
GTTGAAACGTGCGACAAATGGTTACTCTTCTCCACTACTAGAAGCGTGCG
TTTTTCTTATTTTGGAGAAACCCTCGTTGTCGAGGCAACGCCGTATTTTT
GTTGTCGTATTTTGGAACCAAACGCAGGGTATGCCCTAGAACTTGTCCCC
GGAGTAACATGTCAAATCGGTAAGCCAGGAAATCCACTAGAACGGTTTGA
AGCGTTCCAAGTTGTGCGTCCGTTTGCTGCGCATTATTTACGTGAGTTCG
GCTTGCTCGAAGTGATTTCAATGCTTCGACGAGTGAACCTCACCTCGTGG
GATGCTTTACCGGCAGAACGAAAAGGGGGAAACTGTAACTTCTGCACACG
ACGTGTCCAGACACGATAACCTCTGCTCTGCGTTGTCCAAATCTGACCAT
AGTTGTCAGCCACTGTCGTAAGCTAATTGTCTCATATTCTGTCAGTACTG
TAGCGAACAAGCAAAGTGATCAGCTGCTGCGTGAACGATACTATATATCA
AGCGTGTACTGTGCACATTTTACTTTTGATTATGCGTTGCAATGGGATGG
CGTAACGGGTCTGATACTAGGTCGGAGTTGCGCAAGTCCTTATAGCAAAT
TGCCGCATTAAACAGCTTCGATTCACGTGATGAAGGTTTCTGTGACCCCG
ATGGAGATGAACCCTGAGCGGAACTAGTACGTCATTAAAGAGCTGAGATT
TGTTGGGGTTGAACAAGCCCAGCTACGGTGATCCAGTTTTCCTGTACATG
CCCCCATTCCGGCTACTAGCATCGCGCGACGGTTGCTCATGATGGATGCT
CCGATTTGTACCTTCTCGTTCCGTTGCCAAGAGTCATCAGTTACTTCGGA
ACAGGTGCAGTTTAGACCGGTATTGCACAATTCCTTTGGTGCCAAATATG
TGGACCTTGAAGGGCTGCACTATGGACACATGATACGAATGTCTGTTGAA
GTTTGAGAATGAATTGACGCTGTGACCGATTTCCTTCATGTACCGCTGCG
TACATGTGGTTCCATATGTGTGGACAGTATCGTCAACAGAGGAATGGCTC
CATCGAGGCGGAATCTGGGCTGACACTCTGTCGCGGACACTGTTGCATAT
CCATTTTTGACCGCGTACATGCGAGTCGGGGTTGGTGGCATCGGATATTA
TTAATTATACGTTCCTCTGGATTTGTGTGGAATATCTGATTTTGGGAACT
TGTTTGCTACTGCAGGGAATACGAGGGGACAGTGCTGTCGCTCGACAGTT
ACGTTTTCCTCGATGTGGGTTGGTTGGCGAAGGTGCTCGAGCCGGTGCTG
AATCACAAGGGTGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig4061:8054..10068+

>mRNA_H-paniculata_contig4061.10495.1 ID=mRNA_H-paniculata_contig4061.10495.1|Name=mRNA_H-paniculata_contig4061.10495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig4061:8054..10068+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCACACTGTCCCTTCAACGTTGGCGGAAGATCAAGTGCCATCACAGCA
GACGTCGAGCGCCGAAGTCCCCGTCAAGGCGCGCGAGGACCTGCTAAGTG
AGTGGAAGCGTGCGATTAGAGACAAAGGGCTGACTGTCCCGAACCCCGAG
AGCGCGTTGGAAGGGGCGCTTACCATCAGAGGCACACTGTCCCTTCAACG
TTGGCGGAAGATCAAGTGCCATCACAGCAGACGTCGAGCGCCGAAGTCCC
CGTCAAGGCGCGCGAGGACCTGCTAAGTGAGTGGAAGCGTGCGATTAGAG
ACAAAGGGCTGACTGTCCCGAACCCCGAGAGCGCGTTGGAAGGGGCGCTT
ACCATCAGGGAATACGAGGGGACAGTGCTGTCGCTCGACAGTTACGTTTT
CCTCGATGTGGGTTGGTTGGCGAAGGTGCTCGAGCCGGTGCTGAATCACA
AGGGTGTTGGAATACGAGGGGACAGTGCTGTCGCTCGACAGTTACGTTTT
CCTCGATGTGGGTTGGTTGGCGAAGGTGCTCGAGCCGGTGCTGAATCACA
AGGGTGTT
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