mRNA_H-paniculata_contig4058.10489.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4058.10489.1 vs. uniprot
Match: D8LMD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD1_ECTSI) HSP 1 Score: 111 bits (278), Expect = 2.960e-23 Identity = 82/321 (25.55%), Postives = 159/321 (49.53%), Query Frame = 1
Query: 1 RAACIWVTLLGSLVVYTTWSIVDALALRENPSVNLRIKDERYEFPDISICLEANEIIGYGCDD--PNQDC-----------AHTTSIFSIGGTGFVNLSTTDIATANQRFPGRCVDAYLSNITYDPRYNDEE-DREASPPQLSLKIAW----VTSQNDSAITVRQISHSVFVYMTDSKLDPMAEKSTFIGQVAYTRVPANTQAKEVTHVSVAMRVTESIDFRKNSAKLYEAASISTTTIEDSRGDLSAKSPSQVNEGLLLIDFYQPVLSYSIQEEIDPVQWTVLVGNIGGVWEIILVIWSVLFVAARVEDPNLKARNLVKS 909
RA +W L+G ++ Y+++ + A+ RENP ++ + + +E+PDI +CL + YGCD+ +C ++++++ GG + T N G CV+ S IT R+ D E D + L L + W + + +++ + +H+ ++Y+ + DP +E+ + QV Y+ + + + T+V + + + + + + +A S+ST T++D K +Q++ + F Q S I E+DP+ + GN+GG W++++++W + FVAA +DP+LK RN KS
Sbjct: 86 RAVALWTILIGGIIFYSSYLLYTAVRKRENPDASIELSNTVFEYPDIWVCL----YVAYGCDEWELENECMTSATGNRTGWGNSSAVYYPGGVYEQEIHVEGKLTPNN---GWCVEFQTSKIT---RFLDRERDAKYYLDYLLLDMYWYPGGLEADSNTCVVEGWKTHNQWMYVFLN--DPESERVSTGIQVPYSCITNVSSSHSFTYVGIGVTIEDKLG--QEPIVNNKALSVSTATVKDEVNPAIVKPYAQLS-----LQFQQEPNSLEIITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPRNFTKS 387
BLAST of mRNA_H-paniculata_contig4058.10489.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI) HSP 1 Score: 103 bits (258), Expect = 6.550e-21 Identity = 86/320 (26.88%), Postives = 148/320 (46.25%), Query Frame = 1
Query: 1 RAACIWVTLLGSLVVYTTWSIVDALALRENPSVNLRIKDERYEFPDISICLEANEIIGYGCD--DPNQDC---------AHTTSIFSIGGTGFVNLSTTDIATANQRFPGRCVDAYLSNITYDPRYNDEEDREASPPQLSLKIAW----VTSQNDSAITVRQISHSVFVY--MTDSKLDPMAEKSTFIGQVAYTRVPANTQAKEVTHVSVAMRVTESIDFRKNSAKLYEAASISTTTIEDSRGDLSAKSPSQVNEGLLLIDFYQPVLSYSIQEEIDPVQWTVLVGNIGGVWEIILVIWSVLFVAARVEDPNLKARNLVKS 909
RA +W L+G +++Y++ + AL R NPSV+ + + YE+PDI +CL YGCD + ++C +T+++F GG + + T G CV+ S I+ E + L L + W S +++ + HS ++Y + DS ST I QV Y+ + + + T+V + + + E + + +A S+ST T +D K +Q++ + F Q S + E DP + GN+GG W++++++W + FVAA +DP+LK RN KS
Sbjct: 14 RAVALWTVLIGGIILYSSLILYQALGKRNNPSVSFEVSNTVYEYPDIWVCLYGE----YGCDSWELEEECMESAQLTGWGNTSAVFYPGGEYEQTIPGVGMLTPED---GWCVEFETSTISQ--FLGQERNASYYLDYLLLDMYWYPGGTESDSNTCVVEGWEPHSEWMYVKLKDSGYPESGLVSTGI-QVPYSCITNVSSSHSFTYVGMGVTIEERLG--EEPVATNKALSVSTATHKDKVNAAIDKPYAQLS-----LQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPRNFKKS 316
BLAST of mRNA_H-paniculata_contig4058.10489.1 vs. uniprot
Match: A0A6H5JN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN97_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 3.000e-18 Identity = 85/322 (26.40%), Postives = 153/322 (47.52%), Query Frame = 1
Query: 1 RAACIWVTLLGSLVVYTTWSIVDALALRENPSVNLRIKDERYEFPDISICLEANEIIGYGCDDPNQDCAHTTSIFSIGGTGFVNLSTT---------DIATANQRFP--GRCVDAYLSNITYDPRYNDEEDREASP--PQLSLKIAWVTS--QNDSAITV----RQISHSVFVYMTDSKLDPMAEKSTFIGQVAYTRVPANTQAKEVTHVSVAMRVTESIDFRKNSAKLYEAASISTTTIEDSRGDLSAKSPSQVNEGLLLIDFYQPVLSYSIQEEIDPVQWTVLVGNIGGVWEIILVIWSVLFVAARVEDPNLKARNLVKS 909
RA +W L+G ++ Y+++ + A+ R+ P ++ + + +E+PDI +CL A+ YGCD+ + TS + TG+ N S +I + P G CV+ S IT R+ EE R+AS L L + W + DS V + + ++V++ D L ++ + V Y+ + + + T+V + + T I + +A S+ST T++ K +Q++ + Q S+ E+DP+ + GN+GG W+++++IW + FVAA +DP+LK RN +S
Sbjct: 14 RAVALWAILIGGIIFYSSYLLHKAVRKRDAPESSIELSNTVFEYPDIWVCLYAD----YGCDELELEEECMTSA-TANMTGWGNSSAVYYPGGEYEQEIHVEGRETPDHGWCVEFQTSKIT---RFLGEE-RDASRFLDHLLLDMYWYPGGLETDSTTCVIEGWKTHNQWMYVFLNDPALGQVSTRVP----VPYSCITNVSSSHSFTYVGIGL--TTEIKLGQEPIVSNKALSVSTATVKHEVNPAIVKPYAQLS-----LQVQQAPNSHECITEVDPLDLAEMFGNVGGFWDLLMIIWPIFFVAASRQDPHLKPRNFKES 315
BLAST of mRNA_H-paniculata_contig4058.10489.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 5.400e-17 Identity = 87/342 (25.44%), Postives = 157/342 (45.91%), Query Frame = 1
Query: 1 RAACIWVTLLGSLVVYTTWSIVDALALRENPSVNLRIKDERYEFPDISICLEANEIIGYGCDDP--NQDCAHT---------TSIFSIGGTGFVNLSTTDIATANQRFPGRCVDAYLSNITYDPRYNDEEDREASPPQLSLKIAWVTSQNDSAITV--------RQISHSVFVYMTDSKLDPMAEKSTFIGQVAYTRVPANTQAKEVTHVSVAMRVTESIDFRKNSAKLYEAASISTTTIEDSRGDLSAKSPSQVNEGLLLIDFYQPVLSYSIQEEIDPVQWTVLVGNIGGVWEIILVIWSVLFVAARVEDPNLKARNLVKSARRARERAVRQAARLSSMSL 969
RA +++TL+ +++ Y+ + +A+ +NPS + + + Y +PD +CL +GCDD + CA + T++F+ GG ++TT T + G CV S + D ED + L + W +A T S SVF+++ DS ++ QVAY+ + + + + T++ + + T+ ++ Y+A S+ +D R D S L ++ Q S EI+P++ L GN+GG W+++L++W + F++A +DP+LK RN KS R E V + R++S S+
Sbjct: 14 RAVTLFITLIVAILAYSGLLVYNAVKKSKNPSTSFVLSNNVYRYPDTYVCLYNF----FGCDDMALEEFCASSVFDTEGGSSTAVFNPGGDLEQEIATTAYLTDER---GWCVSFETSAVDIVDGERDPED------YILLNMYWYPGGTANASTTCISEEGEWESHSESVFMFLRDSDTGILSAGI----QVAYSCMTSESSSHVFTYMGIGL--TKEDKLYEDDTASYKALETSSAIYKDKRTDNITGIASPY--AWLSMEIAQTTDSLEEITEINPLEIAELFGNVGGFWDLLLMLWPIFFISASRQDPHLKVRNFKKSVTRGSEVVVDLSRRVNSASI 334
BLAST of mRNA_H-paniculata_contig4058.10489.1 vs. uniprot
Match: D7FXH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 9.150e-16 Identity = 86/341 (25.22%), Postives = 149/341 (43.70%), Query Frame = 1
Query: 1 RAACIWVTLLGSLVVYTTWSIVDALALRENPSVNLRIKDERYEFPDISICLEANEIIGYGCDDPNQD--CAHTTSIFSIGGTG--FVNLSTTDIATANQ-----------------RFPGRCVDAYLSNITYDPRYNDEEDREASPPQLSLKIAWVTSQNDSAITVRQIS-------HSVFVYMTDSKLDPMAEKSTFIGQVAYTRVPANTQAKEVTHV--SVAMRVTESIDFRKNSAKLYEAASISTTTIEDSRGDLSAKSPSQVNEGLLLIDFYQPVLSYSIQEEIDPVQWTVLVGNIGGVWEIILVIWSVLFVAARVEDPNLKARNLVKSARRARERA 933
RA +W ++ +V Y W + + ++P+ ++ + + Y +PD+ +C N+ YGCDD + C ++ G F N TD + + G CV+ S T E D + + L + W S N++ + + H +VY + + + ST + Q++Y+ + + +HV SV + +T I + + Y+A SI++ +D + D P L ++ Q S+ I E DP ++ ++GNIGG W++IL++W + FVAA +PNLK RN KS R ERA
Sbjct: 14 RARVLWAIMMVGIVTYVGWLVYKTVERTKSPNTSVELSNVVYTYPDLWVC-PYNQ---YGCDDITLELGCVESSWETEAGPPNAIFYNSEGTDQNATDPLEIEATWVDTSAIEGIVKGRGLCVEFKTSAAT--AFVGQERDPDEYLDYILLDMYWYPSGNETTDSTTCVEDGEEWEPHREWVYAFLTDPEDVTMVSTAV-QLSYSCITS----ASTSHVFNSVGIGLTNQIKYAADDVSSYKAVSINSGVYKD-QADADITKP----YARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFAKSVTRTVERA 338
BLAST of mRNA_H-paniculata_contig4058.10489.1 vs. uniprot
Match: A0A6H5K474_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 4.270e-15 Identity = 78/313 (24.92%), Postives = 145/313 (46.33%), Query Frame = 1
Query: 31 GSLVVYTTWSIVDALALRENPSVNLRIKDERYEFPDISICLEANEIIGYGCDD--PNQDC-----------AHTTSIFSIGGTGFVNLSTTDIATANQRFPGRCVDAYLSNITYDPRY-NDEEDREASPPQLSLKIAWVTS--QNDSAITV----RQISHSVFVYMTDSKLDPMAEKSTFIGQVAYTRVPANTQAKEVTHVSVAMRVTESIDFRKNSAKLYEAASISTTTIEDSRGDLSAKSPSQVNEGLLLIDFYQPVLSYSIQEEIDPVQWTVLVGNIGGVWEIILVIWSVLFVAARVEDPNLKARNLVKS 909
S V +++ + A+ R NP ++ + + +E+PD+ +CL + YGCD+ ++C H+++++ GG + + T N G CV+ S IT R+ E D + L L + W + DS V + ++V++ D L + ST I QV Y+ + + + T+V + + + + + +A S+ST T++D K +Q++ + Q S + E+DP+ + GN+GG W++++++W + FVAA +DP+LK RN KS
Sbjct: 64 ASFSVNSSYLLYKAVRKRNNPDASIELSNTVFEYPDVWVCL----YVDYGCDEWELEEECMTSATANRTGWGHSSAVYYPGGVYEQEIHVEEKLTPNN---GWCVEFQTSKIT---RFLGRERDAKYYLDYLLLDMYWYPGGLEVDSTTCVVEGWKTHKQWMYVFLNDPVL---GQVSTGI-QVPYSCITNVSSSHSHTYVGIGVTTEDKLG--QEPIVNNKALSVSTATVKDEVNPAIVKPYAQLS-----LQVQQEPNSLEVITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPRNFKKS 355
BLAST of mRNA_H-paniculata_contig4058.10489.1 vs. uniprot
Match: A0A6H5JND4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND4_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 8.720e-11 Identity = 88/345 (25.51%), Postives = 144/345 (41.74%), Query Frame = 1
Query: 1 RAACIWVTLLGSLVVYTTWSIVDALALRENPSVNLRIKDERYEFPDISICLEANEIIGYGCDDPN----QDCAHTTSIFSIGGTGFV----NLSTTDIA---------------TANQRFPGR----CVDAYLSNITYDPRYNDEEDREASPPQLSLKIAWVTS---QNDSAITVRQI------SHSVFVYMTDSKLDPMAEKSTFIGQVAYTRVPANTQAKEVTHVSVAMRVTESIDFRKNSAKLYEAASI-STTTIEDSRGDLSAKSPSQVNEGLLLIDFY--QPVLSYSIQEEIDPVQWTVLVGNIGGVWEIILVIWSVLFVAARVEDPNLKARNLVKSARR 918
R +W L+ ++ Y W++ +PS + + +E Y +PD +CL GCD + + C +++ G + LS TD + + RF G CV +S I Y + +E +E +L++AW S +NDS + S SV +++ D D +A QVAYT +++ T V +A+ T+ +D + + Y A +I S + D G+ S + ID Q S E PV L+G+IGG W+++L++W V FV +DP LK R+ KS +R
Sbjct: 14 RYILLWTILIAGILAYIGWALSRLHHQYLDPSTSFSLSNEVYRYPDFGVCLYKEN----GCDSLDGHIAEGCVTSSNSTEFGPSTAEYRGQELSPTDGVWIPDTAEEWDKRQDISVDPRFTGPEKKYCVLFNMSEIEY--KLGEERVQENYLDYTNLRMAWYPSGSKENDSNTCTTDLASLVPHSMSVVIHLFDEVTDTIANGF----QVAYTCRTNTSKSHMFTDVVLALTETKKLDGTTD--RSYRAETIYSNPYVSDQVGE----DISNITRPYAFIDLRIKQGPNSLEFITEDSPVSIGELLGDIGGFWDVLLLLWPVFFVVVSQQDPTLKPRDFRKSLQR 342
BLAST of mRNA_H-paniculata_contig4058.10489.1 vs. uniprot
Match: A0A6H5JF84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF84_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 8.660e-9 Identity = 52/162 (32.10%), Postives = 87/162 (53.70%), Query Frame = 1
Query: 454 VFVYMTDSKLDPMAEKSTFIGQVAYTRVPANTQAKEVTHV--SVAMRVTESIDFRKNSAKLYEAASISTTTIEDSR-GDLSAKSPSQVNEGLLLIDFYQPVLSYSIQEEIDPVQWTVLVGNIGGVWEIILVIWSVLFVAARVEDPNLKARNLVKSARRARER 930
V+ ++TD + + ST I Q++Y+ + + + + HV SV + +T I + + Y+A SI++ +D GD++ L ++ Q S+ I E DP ++ ++GNIGG W++IL++W + FVAA +PNLK RN KS R ER
Sbjct: 11 VYAFLTDP--EDLTMVSTAI-QLSYSCITSTSTS----HVFNSVGIGLTNQIKYTGDIISSYKAVSINSGVYKDQADGDITKPY------ARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFAKSFTRTVER 159
BLAST of mRNA_H-paniculata_contig4058.10489.1 vs. uniprot
Match: A0A6H5L518_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L518_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 2.290e-8 Identity = 84/347 (24.21%), Postives = 143/347 (41.21%), Query Frame = 1
Query: 1 RAACIWVTLLGSLVVYTTWSIVDALALRENPSVNLRIKDERYEFPDISICLEANEIIGYGCDDPN--QDCAHT--TSIFSIGGTGF---VNLSTTDIATANQRFPGRCVDAYLSNITYDPRYNDEED------------------REASPPQ----LSLKIAWVTSQNDSAIT------VRQISHSVFVYMTDSKLDPMAEKSTFIGQVAYTRVPANTQAKEVTHVSVAMRVTESIDFRKNSAKLYEAASISTTTIEDSRGDLSAKSPSQVNEGLLLIDFYQPVLSYSIQEEIDPVQWTVLVGNIGGVWEIILVIWSVLFVAARVEDPNLKARNLVKSARRARERAV 936
RA +W + +++ Y W A + P + + +E Y+FPD+ ICL N YGCD+ + C ++ T+ + F V L T Q ++A N D N ED +E P + + L + W T V H +VY S D + ST + ++Y+ + NT T ++ + +T+ F + Y+A + + + + + +P L ++ Q S+ I E +P ++ + GNIGG W+++L++W + FVAA +DP+LK R+ KS R ERA
Sbjct: 50 RAVVVWTVSVAAILSYCGWLFYKAAEKAKAPDTSFLLTNEVYKFPDLWICLYVN----YGCDELELEEKCVNSAWTTEGGVPNAVFYPRVQLDQEQEITTEQLQ----IEAIPENTDVDSEGNSLEDGRGKCVIFRTSAATAFVGQERDPHEFLDYILLDMYWNPGGTSGKSTTCVPDGVEWTDHREWVYGFLSDPDDPSAISTGV-HLSYSCI-TNTSNTH-TFNTMGIGLTQQKKFMDDDKSSYKAL-FTNFGVHKNVVNPNITTP----YAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAAAQQDPHLKPRSFKKSVVRGAERAA 380
BLAST of mRNA_H-paniculata_contig4058.10489.1 vs. uniprot
Match: A0A6H5JSG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG4_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 3.660e-7 Identity = 51/180 (28.33%), Postives = 85/180 (47.22%), Query Frame = 1
Query: 367 ASPPQLSLKIAWVTSQNDSAITVRQISHSVFVYMTDSKLDPMAEKSTFIGQVAYTRVPANTQAKEVTHVSVAMRVTESIDFRKNSAKLYEAASISTTTIEDSRGDLSAKSPSQVNEGLLLIDFYQPVLSYSIQEEIDPVQWTVLVGNIGGVWEIILVIWSVLFVAARVE-DPNLKARNLV 903
+S + ++ + W+ S D+A T + V V + S P E +F+ V Y R E+ V + + T +S ++ A +ISTTT L + + ++ G L + Q S + EE+ P+ GN+GG WE++LV+W +LF A R + P L+ARN +
Sbjct: 53 SSDLRATISMNWLAS--DTADTATIYTEQVAVTASASDDLPEVEDISFV-YVPYDRYTTADPIDELNTVDLTIGKTTKKMLDGSSTTVFPALTISTTTTVIQETSLPSSTYAEYALGYLKLMVRQGPFSLTSVEEVSPLDVGSFFGNLGGFWELLLVLWGLLFFATRQDRTPQLRARNFI 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4058.10489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4058.10489.1 >prot_H-paniculata_contig4058.10489.1 ID=prot_H-paniculata_contig4058.10489.1|Name=mRNA_H-paniculata_contig4058.10489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=427bp RAACIWVTLLGSLVVYTTWSIVDALALRENPSVNLRIKDERYEFPDISICback to top mRNA from alignment at H-paniculata_contig4058:7696..13814+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4058.10489.1 ID=mRNA_H-paniculata_contig4058.10489.1|Name=mRNA_H-paniculata_contig4058.10489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6119bp|location=Sequence derived from alignment at H-paniculata_contig4058:7696..13814+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4058:7696..13814+ >mRNA_H-paniculata_contig4058.10489.1 ID=mRNA_H-paniculata_contig4058.10489.1|Name=mRNA_H-paniculata_contig4058.10489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2562bp|location=Sequence derived from alignment at H-paniculata_contig4058:7696..13814+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |