mRNA_H-paniculata_contig4050.10479.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4050.10479.1
Unique NamemRNA_H-paniculata_contig4050.10479.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4050.10479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4050contigH-paniculata_contig4050:9837..10324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930240.5681727-CDS-H-paniculata_contig4050:9836..99621622930240.5681727-CDS-H-paniculata_contig4050:9836..9962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4050 9837..9962 +
1691481205.9276981-CDS-H-paniculata_contig4050:9836..99621691481205.9276981-CDS-H-paniculata_contig4050:9836..9962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4050 9837..9962 +
1622930240.5879502-CDS-H-paniculata_contig4050:10240..103241622930240.5879502-CDS-H-paniculata_contig4050:10240..10324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4050 10241..10324 +
1691481205.9379773-CDS-H-paniculata_contig4050:10240..103241691481205.9379773-CDS-H-paniculata_contig4050:10240..10324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4050 10241..10324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4050.10479.1prot_H-paniculata_contig4050.10479.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4050 9837..10324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4050.10479.1

>prot_H-paniculata_contig4050.10479.1 ID=prot_H-paniculata_contig4050.10479.1|Name=mRNA_H-paniculata_contig4050.10479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MSGLGLVDESVMRVRGRSRAKEKKCLVVTDNGLPEGSVGTSEGIRKILGV
KTEKDKLLVVRPALFPPPR*
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mRNA from alignment at H-paniculata_contig4050:9837..10324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4050.10479.1 ID=mRNA_H-paniculata_contig4050.10479.1|Name=mRNA_H-paniculata_contig4050.10479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=488bp|location=Sequence derived from alignment at H-paniculata_contig4050:9837..10324+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGGTCTGGGGCTGGTCGACGAGAGCGTTATGCGGGTGAGAGGCAG
ATCCAGGGCCAAGGAGAAAAAGTGCCTGGTCGTAACGGACAATGGGCTGC
CCGAGGGCTCTGTCGGTACTAGCGAGGTAAATATGGCAAATATGATAGTA
CTTCGCTTTACTTTAGAACTAAATTTATCCATTAGCATCTTGCGCTTTTT
TTTGTTTTTGATTTTTTTGGGATATGGTTTGTTCTGCGGTGTTGTTTTTT
CGGTTTGTGCTCTTTAGTTGCTTTTCGTGTTGCACCCCTCCAGAACAAAT
GCGTCCACGCTGTTCAATCCCTTCTCGTGTTCGATTCGGGGTTGTGGTCT
CCTCCATCCGATTGCTTTTCCTCTTCTGTTTTATGTGCCCGTGTTAAACT
GCAGGGTATCCGCAAGATATTGGGCGTCAAGACTGAGAAGGACAAGCTTT
TAGTTGTGCGACCTGCTCTCTTCCCCCCGCCAAGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4050:9837..10324+

>mRNA_H-paniculata_contig4050.10479.1 ID=mRNA_H-paniculata_contig4050.10479.1|Name=mRNA_H-paniculata_contig4050.10479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig4050:9837..10324+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGGTCTGGGGCTGGTCGACGAGAGCGTTATGCGGGTGAGAGGCAG
ATCCAGGGCCAAGGAGAAAAAGTGCCTGGTCGTAACGGACAATGGGCTGC
CCGAGGGCTCTGTCGGTACTAGCGAGATGTCGGGTCTGGGGCTGGTCGAC
GAGAGCGTTATGCGGGTGAGAGGCAGATCCAGGGCCAAGGAGAAAAAGTG
CCTGGTCGTAACGGACAATGGGCTGCCCGAGGGCTCTGTCGGTACTAGCG
AGGGTATCCGCAAGATATTGGGCGTCAAGACTGAGAAGGACAAGCTTTTA
GTTGTGCGACCTGCTCTCTTCCCCCCGCCAAGGTAGGGTATCCGCAAGAT
ATTGGGCGTCAAGACTGAGAAGGACAAGCTTTTAGTTGTGCGACCTGCTC
TCTTCCCCCCGCCAAGGTAG
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