mRNA_H-paniculata_contig40495.10475.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40495.10475.1
Unique NamemRNA_H-paniculata_contig40495.10475.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40495.10475.1 vs. uniprot
Match: D7FP33_ECTSI (E3 ubiquitin-protein ligase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP33_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.210e-44
Identity = 88/197 (44.67%), Postives = 129/197 (65.48%), Query Frame = 1 
Query:   16 WFEDP-TFTSELTSSDIARHTTVFFIDVDQSIEGIGEEIVDAKLPYAVRTLVSGEEVIIPMNNMILTMDEFTGLTADGSNARAERTFHQASTTTTASDVWYWDGETYEGVEISLMYLEMMIGKFEYTKIKEIDPVDPWAIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSVRTPALLIGRRLSTTSSRIS 603
            W+E   TF  E+   + A+  + + IDV+  +E +  + VD KLPYA     +  E+   +N+M++ + EF G+  +G+    +RT+ Q++TT T +  WYW  ET E +E +L+ +++ I KFEYT I E+DPVD W+IIGAIGG+WQ +  GFG FFV+SVKQ+PDRK+RN  KSV  PA ++ +RLST  SR S
Sbjct:  186 WYESADTFDPEIYPIN-AQFLSAYLIDVEAGVEPLEGKSVDVKLPYARIEPTTATELTTTVNHMVMGLTEFAGIDDNGNREERQRTYSQSTTTGTQN--WYWTEETIE-LEFALIMVDVSIPKFEYTSIVEVDPVDGWSIIGAIGGIWQFVVTGFGLFFVYSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSS 378
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BLAST of mRNA_H-paniculata_contig40495.10475.1 vs. uniprot
Match: D7FP34_ECTSI (Similar to neural cell expressed, developmentally down-regulated 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP34_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.590e-43
Identity = 84/179 (46.93%), Postives = 113/179 (63.13%), Query Frame = 1 
Query:   79 VFFIDVDQSIEGIGEEIVDAKLPYAVRTLVSGEEVIIPMNNMILTMDEFTGLTADGSNARAERTFHQASTTTTASDVWYWDGETYEGVEISLMYLEMMIGKFEYTKIKEIDPVDPWAIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSVRTPALLIGRRLS--TTSSRISQQ 609
            ++ I  D SIE      VDAK+PY+   L +       +N+M+L + EFTG+  +G+    +R+F QA  T T  + W+W  E Y+ VE     +E+ IGKFE+T I+E+DPVD W+IIGAIGG+WQ +  GFG FFVFS KQ+PDRK+RN  KS+  PA    +RLS   TSSR S Q
Sbjct:  200 MYLIPPDSSIESFTSASVDAKVPYSRLNLTTDTAFEATINHMVLGVTEFTGINENGNKKEKQRSFSQA--TITGVEHWWWGAEDYDSVEFGFFMVELSIGKFEFTSIEEVDPVDGWSIIGAIGGIWQFVVTGFGLFFVFSEKQSPDRKMRNFRKSIGKPAEFANKRLSILNTSSRSSNQ 376
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BLAST of mRNA_H-paniculata_contig40495.10475.1 vs. uniprot
Match: A0A6H5JSI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI3_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 5.180e-41
Identity = 90/202 (44.55%), Postives = 128/202 (63.37%), Query Frame = 1 
Query:   16 WFEDPTF----TSELTSSDIARHT---TVFFIDVDQSIEGIGEEIVDAKLPYAVRTLVSGEEVIIPMNNMILTMDEFTGL-TADGSNARAERTFHQASTTTTASDVWYWDGETYEGVEISLMYLEMMIGKFEYTKIKEIDPVDPWAIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSVRTPALLIGRRLSTTSSR 597
            W EDP        EL S  ++ +T    +FF+DVD  +E IGEE+ DAKLPY   +  +   ++  M++M++ M +F  + T+ G     +RTF Q+ST+ T +  WY + +  E  E++ +   M I KFEYT I+++DPVD WAIIGAIGGVWQ + + FG FFVFS KQ PD+K+RN +KSV  PA ++ R LS+ SSR
Sbjct:  218 WDEDPHDDFDPAVELASRGVSINTQFVNLFFVDVDLGVEAIGEELTDAKLPYNRLSPTTNGSMVGTMSHMVIEMTQFQPISTSSGEKQDPQRTFTQSSTSATVN--WY-NPDFNE--ELAALLFNMFIPKFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVKRHLSSASSR 414
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BLAST of mRNA_H-paniculata_contig40495.10475.1 vs. uniprot
Match: D8LQB8_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB8_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.020e-38
Identity = 87/211 (41.23%), Postives = 127/211 (60.19%), Query Frame = 1 
Query:   16 WFEDPTF----TSELTSSDIARHT---TVFFIDVDQSIEGIGEEIVDAKLPYAVRTLVSGEEVIIPMNNM---------ILTMDEFTGL-TADGSNARAERTFHQASTTTTASDVWYWDGETYEGVEISLMYLEMMIGKFEYTKIKEIDPVDPWAIIGAIGGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSVRTPALLIGRRLSTTSSR 597
            W EDP        EL S+ ++ +T    +FF+DVD  +E IGEE+ DAKLPY   +  +   ++  M++M         ++ M +F  + T+ G     +RTF Q+ST+ T +    W    ++  E++ +   M I KFEYT I+++DPVD WAIIGAIGGVWQ + + FG FFVFS KQ PD+K+RN +KSV  PA ++ R LS+ +SR
Sbjct:  178 WDEDPHDDFDPAVELASTGVSINTQFVNLFFVDVDLGVEAIGEELTDAKLPYDRLSPTTSGSMVGTMSHMKSCWATTGQVIEMTQFQPISTSSGQKQDPQRTFTQSSTSATVN----WYNPDFDE-ELAALLFNMFIPKFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVNRHLSSANSR 383
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BLAST of mRNA_H-paniculata_contig40495.10475.1 vs. uniprot
Match: A0A6H5JZ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ12_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.850e-31
Identity = 78/207 (37.68%), Postives = 116/207 (56.04%), Query Frame = 1 
Query:    4 EQASWFEDPTFTSELTSSDIARHTTVFFIDVDQSIEGIGEEIVDAKLPYAVRTLVSGEEVIIPMNNMILTMDEFTGLTADGSNARAERTFHQASTTTTASDVWYWDGETYEGVEISLMYLEMMIGKFEYTKI------KEIDPVDPWAIIGAI-GGVWQIICVGFGAFFVFSVKQAPDRKLRNLEKSVRTPALLIGRRLSTTSSRIS 603
            EQ  W+E        T +  A+  + + IDV+  +E +  + VD KLPYA    ++  E     N+M++ + EF G+  +G+    +RT+ Q++TT T +  WYW  ETY+  E +LM +++ I KFEYT I      +  + V PW  +        + +  GFG FFVFSVKQ+PDRK+RN  KSV  PA ++ +RLST  SR S
Sbjct:  205 EQFLWYESADTFDRATYNINAQFLSTYLIDVEAGVEPLEGKSVDVKLPYARIEPITDTEFTAIANHMVVGLTEFAGIDDNGNREERQRTYSQSTTTGTQN--WYWTDETYD-FEFALMIVDVSIPKFEYTFIAVSMNQRSKEEVSPWFALPPFKDSAAEFVVTGFGLFFVFSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSS 408
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40495.10475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FP33_ECTSI1.210e-4444.67E3 ubiquitin-protein ligase, putative n=1 Tax=Ecto... [more]
D7FP34_ECTSI2.590e-4346.93Similar to neural cell expressed, developmentally ... [more]
A0A6H5JSI3_9PHAE5.180e-4144.55WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LQB8_ECTSI1.020e-3841.23WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JZ12_9PHAE1.850e-3137.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40495contigH-paniculata_contig40495:488..1555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue6.2e-39
Seed eggNOG ortholog2880.D7FP33
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0940@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size609
Cds size609
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40495.10475.1prot_H-paniculata_contig40495.10475.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40495 488..1555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930239.4759443-CDS-H-paniculata_contig40495:487..8111622930239.4759443-CDS-H-paniculata_contig40495:487..811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40495 488..811 -
1691481205.2625837-CDS-H-paniculata_contig40495:487..8111691481205.2625837-CDS-H-paniculata_contig40495:487..811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40495 488..811 -
1622930239.4922848-CDS-H-paniculata_contig40495:973..10541622930239.4922848-CDS-H-paniculata_contig40495:973..1054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40495 974..1054 -
1691481205.2735074-CDS-H-paniculata_contig40495:973..10541691481205.2735074-CDS-H-paniculata_contig40495:973..1054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40495 974..1054 -
1622930239.5213037-CDS-H-paniculata_contig40495:1351..15551622930239.5213037-CDS-H-paniculata_contig40495:1351..1555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40495 1352..1555 -
1691481205.2821062-CDS-H-paniculata_contig40495:1351..15551691481205.2821062-CDS-H-paniculata_contig40495:1351..1555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40495 1352..1555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40495.10475.1

>prot_H-paniculata_contig40495.10475.1 ID=prot_H-paniculata_contig40495.10475.1|Name=mRNA_H-paniculata_contig40495.10475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp
MEQASWFEDPTFTSELTSSDIARHTTVFFIDVDQSIEGIGEEIVDAKLPY
AVRTLVSGEEVIIPMNNMILTMDEFTGLTADGSNARAERTFHQASTTTTA
SDVWYWDGETYEGVEISLMYLEMMIGKFEYTKIKEIDPVDPWAIIGAIGG
VWQIICVGFGAFFVFSVKQAPDRKLRNLEKSVRTPALLIGRRLSTTSSRI
SQQ
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mRNA from alignment at H-paniculata_contig40495:488..1555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40495.10475.1 ID=mRNA_H-paniculata_contig40495.10475.1|Name=mRNA_H-paniculata_contig40495.10475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig40495:488..1555- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACAGGCCTCCTGGTTTGAAGACCCAACTTTTACGTCGGAACTAAC
CAGCTCGGATATCGCTCGACACACTACTGTGTTCTTCATCGACGTTGATC
AGTCCATAGAAGGCATCGGAGAAGAAATCGTGGACGCCAAGCTTCCATAC
GCTGTACGAACACTCGTTTCTGGGGAGGAAGTTATTATTCCCATGAATAA
CATGGTGAGTGAATGAGTGAGTGCTGTATTCGACTTGCCTGGTACTCTGT
GCAATACATGTCTACCTTTGACCAGGGTGAGAATTGTTATTTTTTCCCCC
TAGTGCAGTAGTATCAGAAGTTATGTTTGGTATTCTTGGTCGAATGCTCA
AGCTTCGTTCGTTTCTCGTGTTGACAGCACTACAGGCGCAATTAGTCCTT
GCCGTTCTGCTGCGCCTCGATTTTGATGTGATTTCTGTATTACAGCTCCC
AACCTCACGATGTCCCGTCTTTTTCCTGTTTGAACATCACGCCTTCTCTA
GATATTGACGATGGACGAATTTACAGGGCTTACGGCTGACGGGTCTAATG
CGCGGGCAGAGAGGACCTTCCATCAGGCAAGTGTTCACCAAACGAGCAGG
GTGGTCGGTCGGGCGGGGTTTACCGGTGCTCTGGATGTGTAGTTTTACCT
CAGACTCGTCGTTCACGCTCGCCCACCCGTTCGCTTTCGGTTCTCATCGT
CTGTTGATGCATCTGTTATATTCCATAATTGTTATTTCTCTCAGACGACG
ACGACCGCGTCAGATGTGTGGTACTGGGACGGCGAGACGTATGAAGGTGT
AGAAATTTCCCTGATGTATTTGGAGATGATGATTGGCAAGTTCGAGTACA
CGAAGATCAAAGAGATCGATCCCGTGGATCCGTGGGCCATTATTGGGGCA
ATCGGCGGGGTTTGGCAGATCATATGTGTAGGCTTTGGAGCGTTCTTCGT
GTTCTCCGTGAAGCAGGCACCAGATCGCAAGCTGAGAAACTTGGAGAAGA
GTGTAAGAACTCCGGCGCTTCTAATCGGAAGGAGGCTTTCAACTACAAGC
TCCAGGATCTCACAACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig40495:488..1555-

>mRNA_H-paniculata_contig40495.10475.1 ID=mRNA_H-paniculata_contig40495.10475.1|Name=mRNA_H-paniculata_contig40495.10475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig40495:488..1555- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACAGGCCTCCTGGTTTGAAGACCCAACTTTTACGTCGGAACTAAC
CAGCTCGGATATCGCTCGACACACTACTGTGTTCTTCATCGACGTTGATC
AGTCCATAGAAGGCATCGGAGAAGAAATCGTGGACGCCAAGCTTCCATAC
GCTGTACGAACACTCGTTTCTGGGGAGGAAGTTATTATTCCCATGAATAA
CATGATGGAACAGGCCTCCTGGTTTGAAGACCCAACTTTTACGTCGGAAC
TAACCAGCTCGGATATCGCTCGACACACTACTGTGTTCTTCATCGACGTT
GATCAGTCCATAGAAGGCATCGGAGAAGAAATCGTGGACGCCAAGCTTCC
ATACGCTGTACGAACACTCGTTTCTGGGGAGGAAGTTATTATTCCCATGA
ATAACATGATATTGACGATGGACGAATTTACAGGGCTTACGGCTGACGGG
TCTAATGCGCGGGCAGAGAGGACCTTCCATCAGGCAAGTATATTGACGAT
GGACGAATTTACAGGGCTTACGGCTGACGGGTCTAATGCGCGGGCAGAGA
GGACCTTCCATCAGGCAAGTACGACGACGACCGCGTCAGATGTGTGGTAC
TGGGACGGCGAGACGTATGAAGGTGTAGAAATTTCCCTGATGTATTTGGA
GATGATGATTGGCAAGTTCGAGTACACGAAGATCAAAGAGATCGATCCCG
TGGATCCGTGGGCCATTATTGGGGCAATCGGCGGGGTTTGGCAGATCATA
TGTGTAGGCTTTGGAGCGTTCTTCGTGTTCTCCGTGAAGCAGGCACCAGA
TCGCAAGCTGAGAAACTTGGAGAAGAGTGTAAGAACTCCGGCGCTTCTAA
TCGGAAGGAGGCTTTCAACTACAAGCTCCAGGATCTCACAACAGACGACG
ACGACCGCGTCAGATGTGTGGTACTGGGACGGCGAGACGTATGAAGGTGT
AGAAATTTCCCTGATGTATTTGGAGATGATGATTGGCAAGTTCGAGTACA
CGAAGATCAAAGAGATCGATCCCGTGGATCCGTGGGCCATTATTGGGGCA
ATCGGCGGGGTTTGGCAGATCATATGTGTAGGCTTTGGAGCGTTCTTCGT
GTTCTCCGTGAAGCAGGCACCAGATCGCAAGCTGAGAAACTTGGAGAAGA
GTGTAAGAACTCCGGCGCTTCTAATCGGAAGGAGGCTTTCAACTACAAGC
TCCAGGATCTCACAACAG
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