mRNA_H-paniculata_contig1162.1047.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1162.1047.1
Unique NamemRNA_H-paniculata_contig1162.1047.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1162.1047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1162contigH-paniculata_contig1162:18420..19359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size942
Cds size609
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.370698-CDS-H-paniculata_contig1162:18419..190281622928872.370698-CDS-H-paniculata_contig1162:18419..19028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1162 18420..19028 +
1691480651.9258678-CDS-H-paniculata_contig1162:18419..190281691480651.9258678-CDS-H-paniculata_contig1162:18419..19028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1162 18420..19028 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.3850973-UTR-H-paniculata_contig1162:19028..193591622928872.3850973-UTR-H-paniculata_contig1162:19028..19359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1162 19029..19359 +
1691480651.9346175-UTR-H-paniculata_contig1162:19028..193591691480651.9346175-UTR-H-paniculata_contig1162:19028..19359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1162 19029..19359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1162.1047.1prot_H-paniculata_contig1162.1047.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1162 18420..19028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1162.1047.1

>prot_H-paniculata_contig1162.1047.1 ID=prot_H-paniculata_contig1162.1047.1|Name=mRNA_H-paniculata_contig1162.1047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp
KGSVGGRPPAAAAADASAASAAAGRDAKASKASKKRKEHSRGTEQISGGG
DGSGIGGSSGSSGKTSKKQKTTPTKGNGSHGKKQAKTKAGNEQGINSKSN
NDADADADDGHNRKSSTKSTPKESTGKVVVVGTKKKKGGKKPACEEPNAP
DRKTARTAATKKKPRKVMLQTTVKVVASALPVGGGGRTTRSKKKSKGEAG
EA*
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mRNA from alignment at H-paniculata_contig1162:18420..19359+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1162.1047.1 ID=mRNA_H-paniculata_contig1162.1047.1|Name=mRNA_H-paniculata_contig1162.1047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=940bp|location=Sequence derived from alignment at H-paniculata_contig1162:18420..19359+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGGTCGGTTGGTGGACGACCGCCTGCCGCGGCGGCGGCCGATGCTTC
TGCTGCTTCTGCTGCTGCAGGAAGAGATGCAAAAGCTTCGAAGGCTAGTA
AGAAACGGAAGGAGCATTCGAGGGGGACAGAACAGATCAGCGGTGGCGGC
GACGGCAGCGGTATCGGGGGCAGTAGCGGTAGCAGCGGCAAGACCTCAAA
AAAACAGAAGACGACCCCGACAAAGGGAAATGGCAGTCATGGCAAAAAGC
AAGCGAAAACTAAGGCAGGCAATGAGCAAGGCATCAACAGCAAGAGCAAC
AATGACGCTGACGCCGATGCCGACGATGGCCACAACCGGAAATCCAGCAC
AAAGAGTACCCCGAAAGAGTCCACGGGAAAGGTCGTGGTTGTTGGGACAA
AAAAGAAGAAGGGTGGTAAGAAGCCAGCATGTGAGGAACCGAATGCCCCC
GATCGAAAAACCGCCAGGACAGCGGCGACGAAGAAGAAACCTCGCAAGGT
CATGCTCCAGACGACGGTGAAAGTAGTGGCCTCGGCGCTCCCTGTCGGCG
GCGGCGGGCGCACCACCAGAAGCAAGAAGAAAAGTAAAGGCGAAGCTGGT
GAAGCGTAATGGCGGGCCCACAACATCCCAGCATCGATTGCCCCTGGGAG
AATACTCCCTCGCGTTGCTTATTGCCCAGCGTCTCTCTCTCTCATTGGTG
CGGACGGCGATATGTAGATGTGCGTTTGCTTTTTTACCGAGATAGTGCTG
AGGGGCGGAGGACTTTCGTCGTCCGTAGTGGGGGACTGGGCGGCGGCGGC
GGGTGCAAGAAGTCATATCAAGTTCAGAACCCCCTCCCGACGTCTGCCAA
GAAGAAGCGCATAAAGCGAAAGGCAAGGTGATTTTTGTTGGGGGCGTTCA
AGGTGGCGGCCAAACGATGTGGGAGGGAACAGGTGGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1162:18420..19359+

>mRNA_H-paniculata_contig1162.1047.1 ID=mRNA_H-paniculata_contig1162.1047.1|Name=mRNA_H-paniculata_contig1162.1047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig1162:18420..19359+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGGTCGGTTGGTGGACGACCGCCTGCCGCGGCGGCGGCCGATGCTTC
TGCTGCTTCTGCTGCTGCAGGAAGAGATGCAAAAGCTTCGAAGGCTAGTA
AGAAACGGAAGGAGCATTCGAGGGGGACAGAACAGATCAGCGGTGGCGGC
GACGGCAGCGGTATCGGGGGCAGTAGCGGTAGCAGCGGCAAGACCTCAAA
AAAACAGAAGACGACCCCGACAAAGGGAAATGGCAGTCATGGCAAAAAGC
AAGCGAAAACTAAGGCAGGCAATGAGCAAGGCATCAACAGCAAGAGCAAC
AATGACGCTGACGCCGATGCCGACGATGGCCACAACCGGAAATCCAGCAC
AAAGAGTACCCCGAAAGAGTCCACGGGAAAGGTCGTGGTTGTTGGGACAA
AAAAGAAGAAGGGTGGTAAGAAGCCAGCATGTGAGGAACCGAATGCCCCC
GATCGAAAAACCGCCAGGACAGCGGCGACGAAGAAGAAACCTCGCAAGGT
CATGCTCCAGACGACGGTGAAAGTAGTGGCCTCGGCGCTCCCTGTCGGCG
GCGGCGGGCGCACCACCAGAAGCAAGAAGAAAAGTAAAGGCGAAGCTGGT
GAAGCGTAAAAGGGGTCGGTTGGTGGACGACCGCCTGCCGCGGCGGCGGC
CGATGCTTCTGCTGCTTCTGCTGCTGCAGGAAGAGATGCAAAAGCTTCGA
AGGCTAGTAAGAAACGGAAGGAGCATTCGAGGGGGACAGAACAGATCAGC
GGTGGCGGCGACGGCAGCGGTATCGGGGGCAGTAGCGGTAGCAGCGGCAA
GACCTCAAAAAAACAGAAGACGACCCCGACAAAGGGAAATGGCAGTCATG
GCAAAAAGCAAGCGAAAACTAAGGCAGGCAATGAGCAAGGCATCAACAGC
AAGAGCAACAATGACGCTGACGCCGATGCCGACGATGGCCACAACCGGAA
ATCCAGCACAAAGAGTACCCCGAAAGAGTCCACGGGAAAGGTCGTGGTTG
TTGGGACAAAAAAGAAGAAGGGTGGTAAGAAGCCAGCATGTGAGGAACCG
AATGCCCCCGATCGAAAAACCGCCAGGACAGCGGCGACGAAGAAGAAACC
TCGCAAGGTCATGCTCCAGACGACGGTGAAAGTAGTGGCCTCGGCGCTCC
CTGTCGGCGGCGGCGGGCGCACCACCAGAAGCAAGAAGAAAAGTAAAGGC
GAAGCTGGTGAAGCGTAA
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