mRNA_H-paniculata_contig40408.10457.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40408.10457.1
Unique NamemRNA_H-paniculata_contig40408.10457.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40408.10457.1 vs. uniprot
Match: D7G789_ECTSI (Alpha-glucosidase II alpha subunit, family GH31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G789_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.520e-20
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:   10 RWDHLKSSAPMLLSMSVAGLPFVGADVGGFFGDPSAELFLRWMQ 141
            +WDHL +SAPMLLSMS+AGLPFVGADVGGFFGDPSAELFLRWMQ
Sbjct:  240 KWDHLAASAPMLLSMSLAGLPFVGADVGGFFGDPSAELFLRWMQ 283
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BLAST of mRNA_H-paniculata_contig40408.10457.1 vs. uniprot
Match: A0A835Z3X1_9STRA (Alpha-glucosidase II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3X1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.060e-16
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   13 WDHLKSSAPMLLSMSVAGLPFVGADVGGFFGDPSAELFLRWMQ 141
            W+HL+ + PMLLS+S+AG+PF GADVGGFFGDPS ELF RWMQ
Sbjct:  564 WEHLRIATPMLLSISIAGVPFAGADVGGFFGDPSPELFTRWMQ 606
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BLAST of mRNA_H-paniculata_contig40408.10457.1 vs. uniprot
Match: A0A1E5RFL0_9ASCO (Glucosidase 2 subunit alpha n=1 Tax=Hanseniaspora osmophila TaxID=56408 RepID=A0A1E5RFL0_9ASCO)

HSP 1 Score: 77.4 bits (189), Expect = 2.050e-15
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 SHIRWDHLKSSAPMLLSMSVAGLPFVGADVGGFFGDPSAELFLRWMQ 141
            +H  W HLK+S PM++S++VAG+PFVGADVGGFFGDP+ EL +RW Q
Sbjct:  671 NHATWRHLKASMPMIMSLNVAGMPFVGADVGGFFGDPTPELMVRWNQ 717
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BLAST of mRNA_H-paniculata_contig40408.10457.1 vs. uniprot
Match: A0A6A7G7H0_9CRUS (Alpha-glucosidase II n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G7H0_9CRUS)

HSP 1 Score: 77.4 bits (189), Expect = 2.050e-15
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   13 WDHLKSSAPMLLSMSVAGLPFVGADVGGFFGDPSAELFLRWMQ 141
            W HLK++ PMLLS S+AGLPFVGADVGGFFG+P AEL LRW Q
Sbjct:  658 WSHLKATTPMLLSHSIAGLPFVGADVGGFFGNPDAELLLRWYQ 700
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BLAST of mRNA_H-paniculata_contig40408.10457.1 vs. uniprot
Match: A0A7M5U253_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5U253_9CNID)

HSP 1 Score: 77.0 bits (188), Expect = 2.800e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   13 WDHLKSSAPMLLSMSVAGLPFVGADVGGFFGDPSAELFLRWMQ 141
            W HLK+S PMLLSM++AGLPFVGADVGGFFG+P  EL +RW Q
Sbjct:  622 WSHLKASIPMLLSMNIAGLPFVGADVGGFFGNPDVELLVRWYQ 664
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BLAST of mRNA_H-paniculata_contig40408.10457.1 vs. uniprot
Match: T2MDP9_HYDVU (Neutral alpha-glucosidase AB (Fragment) n=3 Tax=Hydra vulgaris TaxID=6087 RepID=T2MDP9_HYDVU)

HSP 1 Score: 76.6 bits (187), Expect = 3.830e-15
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   10 RWDHLKSSAPMLLSMSVAGLPFVGADVGGFFGDPSAELFLRWMQ 141
            +W HLK+S PMLLSM+VAGLPFVGAD+GGFFG+P  EL +RW Q
Sbjct:  604 QWSHLKASIPMLLSMNVAGLPFVGADIGGFFGNPDGELCVRWWQ 647
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BLAST of mRNA_H-paniculata_contig40408.10457.1 vs. uniprot
Match: A0A8J2SDJ4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDJ4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.150e-15
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   10 RWDHLKSSAPMLLSMSVAGLPFVGADVGGFFGDPSAELFLRWMQ 141
            +W HLK +APMLLSMSV GL FVGAD GGFFGDP AEL  RW+Q
Sbjct:  605 QWSHLKQAAPMLLSMSVCGLIFVGADAGGFFGDPDAELMARWIQ 648
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BLAST of mRNA_H-paniculata_contig40408.10457.1 vs. uniprot
Match: A0A7S4E7N2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7N2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.160e-15
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   10 RWDHLKSSAPMLLSMSVAGLPFVGADVGGFFGDPSAELFLRWMQ 141
            +W HLK +APMLLSMSV GL FVGAD GGFFGDP AEL  RW+Q
Sbjct:  605 QWSHLKQAAPMLLSMSVCGLIFVGADAGGFFGDPDAELMARWIQ 648
[Close]
BLAST of mRNA_H-paniculata_contig40408.10457.1 vs. uniprot
Match: A0A6B2FW47_MYXSQ (Neutral alpha-glucosidase AB (Trinotate prediction) (Fragment) n=1 Tax=Myxobolus squamalis TaxID=59785 RepID=A0A6B2FW47_MYXSQ)

HSP 1 Score: 75.9 bits (185), Expect = 7.160e-15
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   13 WDHLKSSAPMLLSMSVAGLPFVGADVGGFFGDPSAELFLRWMQ 141
            W+HLK + PMLLS+SVAG+PFVGADV GFF DPS ELFLRW Q
Sbjct:  353 WEHLKITIPMLLSLSVAGIPFVGADVAGFFKDPSDELFLRWYQ 395
[Close]
BLAST of mRNA_H-paniculata_contig40408.10457.1 vs. uniprot
Match: A0A0C2J353_THEKT (Neutral alpha-glucosidase AB n=1 Tax=Thelohanellus kitauei TaxID=669202 RepID=A0A0C2J353_THEKT)

HSP 1 Score: 74.7 bits (182), Expect = 8.920e-15
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   13 WDHLKSSAPMLLSMSVAGLPFVGADVGGFFGDPSAELFLRWMQ 141
            WDHLK + PMLLS+S+AG+PFVGADV GFF DP  ELF+RW Q
Sbjct:   39 WDHLKITIPMLLSLSIAGIPFVGADVAGFFKDPEPELFVRWYQ 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40408.10457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G789_ECTSI3.520e-2090.91Alpha-glucosidase II alpha subunit, family GH31 n=... [more]
A0A835Z3X1_9STRA8.060e-1674.42Alpha-glucosidase II n=1 Tax=Tribonema minus TaxID... [more]
A0A1E5RFL0_9ASCO2.050e-1565.96Glucosidase 2 subunit alpha n=1 Tax=Hanseniaspora ... [more]
A0A6A7G7H0_9CRUS2.050e-1576.74Alpha-glucosidase II n=1 Tax=Hirondellea gigas Tax... [more]
A0A7M5U253_9CNID2.800e-1574.42Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
T2MDP9_HYDVU3.830e-1572.73Neutral alpha-glucosidase AB (Fragment) n=3 Tax=Hy... [more]
A0A8J2SDJ4_9STRA7.150e-1575.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4E7N2_9STRA7.160e-1575.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6B2FW47_MYXSQ7.160e-1576.74Neutral alpha-glucosidase AB (Trinotate prediction... [more]
A0A0C2J353_THEKT8.920e-1572.09Neutral alpha-glucosidase AB n=1 Tax=Thelohanellus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40408contigH-paniculata_contig40408:222..362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1e-16
Seed eggNOG ortholog2880.D7G789
Preferred nameROT2
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K01187,ko:K05546
KEGG ReactionR00028,R00801,R00802,R05980,R05981,R06087,R06088
KEGG Pathwayko00052,ko00500,ko00510,ko01100,ko04141,map00052,map00500,map00510,map01100,map04141
KEGG ModuleM00073,M00074
Hectar predicted targeting categorysignal peptide
GOsGO:0000271,GO:0000902,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006073,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009250,GO:0009272,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009826,GO:0009987,GO:0010035,GO:0010038,GO:0010383,GO:0012505,GO:0015926,GO:0016043,GO:0016049,GO:0016051,GO:0016787,GO:0016798,GO:0017177,GO:0019538,GO:0030243,GO:0030244,GO:0030587,GO:0031288,GO:0031974,GO:0032502,GO:0032989,GO:0032991,GO:0033692,GO:0033919,GO:0034406,GO:0034637,GO:0034645,GO:0036211,GO:0040007,GO:0042221,GO:0042546,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043687,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048589,GO:0048856,GO:0048869,GO:0050896,GO:0051273,GO:0051274,GO:0051278,GO:0051703,GO:0051704,GO:0051707,GO:0060560,GO:0070013,GO:0070085,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071966,GO:0090599,GO:0090600,GO:0090702,GO:0098542,GO:0099120,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.alpha-1,3-glucosidase activity
EggNOG OGsCOG1501@1,KOG1066@2759
EC3.2.1.20,3.2.1.84
COG Functional cat.G
CAZyGH31
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930236.8656557-CDS-H-paniculata_contig40408:221..3621622930236.8656557-CDS-H-paniculata_contig40408:221..362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40408 222..362 +
1691481204.1952891-CDS-H-paniculata_contig40408:221..3621691481204.1952891-CDS-H-paniculata_contig40408:221..362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40408 222..362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40408.10457.1prot_H-paniculata_contig40408.10457.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40408 222..362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40408.10457.1

>prot_H-paniculata_contig40408.10457.1 ID=prot_H-paniculata_contig40408.10457.1|Name=mRNA_H-paniculata_contig40408.10457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
SHIRWDHLKSSAPMLLSMSVAGLPFVGADVGGFFGDPSAELFLRWMQ
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mRNA from alignment at H-paniculata_contig40408:222..362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40408.10457.1 ID=mRNA_H-paniculata_contig40408.10457.1|Name=mRNA_H-paniculata_contig40408.10457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig40408:222..362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCATATCAGGTGGGACCATTTGAAGTCTTCGGCGCCCATGTTGCTGTC
CATGAGCGTTGCGGGCCTGCCCTTTGTTGGGGCGGATGTTGGAGGCTTTT
TCGGAGATCCGTCGGCGGAGCTTTTTCTCCGCTGGATGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig40408:222..362+

>mRNA_H-paniculata_contig40408.10457.1 ID=mRNA_H-paniculata_contig40408.10457.1|Name=mRNA_H-paniculata_contig40408.10457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig40408:222..362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCATATCAGGTGGGACCATTTGAAGTCTTCGGCGCCCATGTTGCTGTC
CATGAGCGTTGCGGGCCTGCCCTTTGTTGGGGCGGATGTTGGAGGCTTTT
TCGGAGATCCGTCGGCGGAGCTTTTTCTCCGCTGGATGCAGTCTCATATC
AGGTGGGACCATTTGAAGTCTTCGGCGCCCATGTTGCTGTCCATGAGCGT
TGCGGGCCTGCCCTTTGTTGGGGCGGATGTTGGAGGCTTTTTCGGAGATC
CGTCGGCGGAGCTTTTTCTCCGCTGGATGCAG
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