mRNA_H-paniculata_contig4040.10456.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4040.10456.1
Unique NamemRNA_H-paniculata_contig4040.10456.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4040.10456.1 vs. uniprot
Match: D7G445_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G445_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.960e-19
Identity = 47/96 (48.96%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:   40 EYESVGCLVDRASSRIMRAGFFSQEP--MSAEICFDLCNDGVNTHFATQYGFECFCGV--ATDVSSPVDDSQCNVKCLGTAGENCGGFNRSSTYVI 315
            ++  VGC  D  S RIM   F  Q    MSA+IC+DLCNDG NTHF TQ+G EC+CG+  A      +D   C++ C GT GENCGGF++ + Y I
Sbjct:   30 DFVLVGCYADSRSLRIM---FDKQSKPIMSADICYDLCNDGTNTHFGTQFGRECWCGIHPALATHGELDIDSCDMACKGTGGENCGGFDKMTVYDI 122
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BLAST of mRNA_H-paniculata_contig4040.10456.1 vs. uniprot
Match: A0A6H5KUX7_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.750e-14
Identity = 45/115 (39.13%), Postives = 58/115 (50.43%), Query Frame = 1 
Query:   40 EYESVGCLVDRASSRIMRAGFFSQEPMSA---------------------EICFDLCNDGVNTHFATQYGFECFCGVATDVS--SPVDDSQCNVKCLGTAGENCGGFNRSSTYVI 315
            +Y  VGC  D  S RIM     S++ MSA                     +ICFDLCNDG NTHF TQYG EC+CG+   ++    +D   C+  C G   E CGGF++ + Y I
Sbjct:   21 DYVLVGCYADSQSGRIM-FNKQSEDVMSASVSCTVLLLRTLAFWIGAWRAQICFDLCNDGTNTHFGTQYGEECWCGIHPALARHGELDIDSCDFPCAGNEEETCGGFDKMTVYDI 134
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BLAST of mRNA_H-paniculata_contig4040.10456.1 vs. uniprot
Match: A0A6H5JN62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN62_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 6.000e-14
Identity = 45/115 (39.13%), Postives = 58/115 (50.43%), Query Frame = 1 
Query:   40 EYESVGCLVDRASSRIMRAGFFSQEPMSA---------------------EICFDLCNDGVNTHFATQYGFECFCGVATDVS--SPVDDSQCNVKCLGTAGENCGGFNRSSTYVI 315
            +Y  VGC  D  S RIM     S++ MSA                     +ICFDLCNDG NTHF TQYG EC+CG+   ++    +D   C+  C G   E CGGF++ + Y I
Sbjct:   21 DYVLVGCYADSQSGRIM-FNKQSEDVMSASVSCTVLLLRTLAFWIGAWRAQICFDLCNDGTNTHFGTQYGEECWCGIHPALARHGELDIDSCDFPCAGNEEETCGGFDKMTVYDI 134
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BLAST of mRNA_H-paniculata_contig4040.10456.1 vs. uniprot
Match: D7FK39_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK39_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.380e-12
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:   40 EYESVGCLVDRASSRIMRAGFFSQEPMSAEICFDLCNDGVNTHFATQYGFECFCGVATDVSSPVDD---SQCNVKCLGTA-GENCGGFNRSSTYVI 315
            ++  VGC  D    RI+ +      PMSAE+C+  C+DGVNTHF  QY  EC+CG+  +++   ++    +C+  C GT  GE CGGF + S + I
Sbjct:   39 DFSFVGCYADSVGKRILNSRG-QHNPMSAEMCYMFCDDGVNTHFGMQYSGECWCGIHPELNQNGEELAAGECDFLCAGTTTGEICGGFLKMSVFEI 133
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BLAST of mRNA_H-paniculata_contig4040.10456.1 vs. uniprot
Match: D7FTE6_ECTSI (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE6_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.440e-12
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:   40 EYESVGCLVDRASSRIMR-------AGFFSQEPMSAEICFDLCNDGVNTHFATQYGFECFCGVATDVSS---PVDDSQCNVKCLGTA-GENCGGFNRSSTYVI 315
            +Y   GC  D    RIM             Q PMSAE C+ +C+DG+NTHF  +Y  EC+C V  D++     +D  +C+  C GT   E CGGFN+ S Y I
Sbjct:   31 DYSPRGCFADSTIDRIMPNIRLVHLQEMTQQGPMSAETCYFICDDGLNTHFGMEYSTECWCAVEPDLTKHGPELDPIECDHLCFGTTTDEYCGGFNKMSVYEI 133
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BLAST of mRNA_H-paniculata_contig4040.10456.1 vs. uniprot
Match: A0A6J8C164_MYTCO (WSC domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8C164_MYTCO)

HSP 1 Score: 58.9 bits (141), Expect = 4.150e-6
Identity = 33/100 (33.00%), Postives = 47/100 (47.00%), Query Frame = 1 
Query:   43 YESVGCLVDRAS---SRIMRAGFFSQEPMSAEICFDLCNDGVN----THFATQYGFECFCGVATDVSSPV----DDSQCNVKCLGTAGENCGGFNRSSTY 309
            Y   GC  ++     +R++  G +S  PMSA IC+  C  G       +F TQ   EC+CG   ++ S        S+CN KC G   E CG  + +S Y
Sbjct:   10 YTDAGCYENKVRERRNRLLSDGPYSDNPMSAVICYKKCTKGTIRDRFNYFGTQNRSECYCGEVANIDSHYGLKQSKSECNRKCNGNKDEKCGSKHNASLY 109
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BLAST of mRNA_H-paniculata_contig4040.10456.1 vs. uniprot
Match: UPI001D0446E9 (WSC domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D0446E9)

HSP 1 Score: 58.5 bits (140), Expect = 7.440e-6
Identity = 33/96 (34.38%), Postives = 47/96 (48.96%), Query Frame = 1 
Query:   25 PVSSVEYESVGCLVDRASSRIMRAGFFSQEPMSAEICFDLCNDGVNTHFATQYGFECFCGVATDVSSP-VDDSQCNVKCLGTAGENCGGFNRSSTY 309
            P +  +Y  VGC  +   +R +     + E M+   C + C    + +F T+YG EC+CG A DVSS      +C + C G   E CG  NR S Y
Sbjct:  917 PAAVGDYVLVGCRTEGNGTRALAGKATAVEGMTNAKCGEFCKG--SKYFGTEYGHECYCGDALDVSSKEAPQKECGMLCGGNPLEFCGASNRLSVY 1010
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4040.10456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G445_ECTSI2.960e-1948.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUX7_9PHAE1.750e-1439.13WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JN62_9PHAE6.000e-1439.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK39_ECTSI2.380e-1239.58WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTE6_ECTSI2.440e-1239.81WSC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6J8C164_MYTCO4.150e-633.00WSC domain-containing protein n=1 Tax=Mytilus coru... [more]
UPI001D0446E97.440e-634.38WSC domain-containing protein n=1 Tax=Hirsutella r... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4040contigH-paniculata_contig4040:7304..10635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue8.3e-16
Seed eggNOG ortholog2880.D7G445
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size920
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4040.10456.1prot_H-paniculata_contig4040.10456.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4040 7391..10036 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930236.75937-UTR-H-paniculata_contig4040:7303..73901622930236.75937-UTR-H-paniculata_contig4040:7303..7390Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4040 7304..7390 +
1691481204.1445582-UTR-H-paniculata_contig4040:7303..73901691481204.1445582-UTR-H-paniculata_contig4040:7303..7390Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4040 7304..7390 +
1622930236.825613-UTR-H-paniculata_contig4040:10036..106351622930236.825613-UTR-H-paniculata_contig4040:10036..10635Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4040 10037..10635 +
1691481204.1862514-UTR-H-paniculata_contig4040:10036..106351691481204.1862514-UTR-H-paniculata_contig4040:10036..10635Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4040 10037..10635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930236.7774346-CDS-H-paniculata_contig4040:7390..74321622930236.7774346-CDS-H-paniculata_contig4040:7390..7432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4040 7391..7432 +
1691481204.1567156-CDS-H-paniculata_contig4040:7390..74321691481204.1567156-CDS-H-paniculata_contig4040:7390..7432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4040 7391..7432 +
1622930236.792577-CDS-H-paniculata_contig4040:8338..84011622930236.792577-CDS-H-paniculata_contig4040:8338..8401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4040 8339..8401 +
1691481204.1692605-CDS-H-paniculata_contig4040:8338..84011691481204.1692605-CDS-H-paniculata_contig4040:8338..8401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4040 8339..8401 +
1622930236.8112867-CDS-H-paniculata_contig4040:9907..100361622930236.8112867-CDS-H-paniculata_contig4040:9907..10036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4040 9908..10036 +
1691481204.1778698-CDS-H-paniculata_contig4040:9907..100361691481204.1778698-CDS-H-paniculata_contig4040:9907..10036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4040 9908..10036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4040.10456.1

>prot_H-paniculata_contig4040.10456.1 ID=prot_H-paniculata_contig4040.10456.1|Name=mRNA_H-paniculata_contig4040.10456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MRAGFFSQEPMSAEICFDLCNDGVNTHFATQYGFECFCGVATDVSSPVDD
SQCNVKCLGTAGENCGGFNRSSTYVIV*
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mRNA from alignment at H-paniculata_contig4040:7304..10635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4040.10456.1 ID=mRNA_H-paniculata_contig4040.10456.1|Name=mRNA_H-paniculata_contig4040.10456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3332bp|location=Sequence derived from alignment at H-paniculata_contig4040:7304..10635+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCACCCCAGCTCCGACCCTTCCTCCCGTGTCGAGTGTGGAGTACGAATC
AGTGGGATGCTTGGTCGACAGAGCGTCGTCCAGGATCATGCGTGCAGGCT
TCTTTTCGCAGGAGCCCATGTCGGCCGAGGTTGGTGCTGTAAATGAATAG
ACAGCGTGTCGGTGTTGTTGTTGGTTGCTGTTTCGAACACGACGGGGAAG
TTTATAGGCCAAAAGATTGAGTACCCCTCTCCCCCCTGTGCATTCTGGAA
GGGGAATTTTCAGATGGTGTGGTCCCAGAAGTTTTGAAAACCTCTGCAAT
TCGTGGCCCATGTGTTATCATGTATGTTGAGGTTTTTTCAACTGCTTAGT
CCCATCAGTTCCCGTGCAATTGCTCGCTAAGACCTCTGCTACCGCTTGGT
ACGACCAAAGGTTGGACCAGCGCAGGATTCCCTCAATTTATCCTCCGCTC
CCTCCTTGCTGTACGCGTTGGTCCATCAATTGATCGGCATGCGCAGTCTG
AATGCTGGAAGAGTGATGTCCTCAAATACCTTGTATTAACGCATGCATTT
AGCACGAACCCGACTTCCTCACTCCAGGCCAGCAACAATGATTGTGTGCA
CTTGGTTACGTCGCGTAGAATCTGTAGACTTCTTAATGCTCAAAAATATT
TTTAACTAATATTTATGCCTTGTGGTCTACTATAGTTTGCAGAGTTTGTG
CCCCCCCACCTCGGTGATAGCGGTTCGACGCGGTCAAAAGCATCACCAGG
AATAGTACTTTCGCGGGGAGGGCGAGTATTCGTCAACACCGGCGATGGCT
TGCCATCTTGGTTTTGGGTGCTACCATCCCCTCTGCACGGATAATCATGG
GGGGCGGATAATACCATGCATTCATGCGATTTGGGTTGTACCCACACTTC
GTGTGAGGACGACAAGGGCCGATCACATAAACGGTTGCCGCAGTAACGCT
ATCAAACAGCTCTAACCGCAGACGCTTCCCTATTTTACCCCCCTCCGTGC
ACCTGCCTGATGTTGTCTGCTGCACCGCAAAATAGATCTGCTTCGACCTC
TGCAACGACGGCGTCAACACTCACTTCGCCACCCAGTATGGCTTCGAGGC
AAGATCTTGACAGATCACATTTATCTATATAGTGTGGCACTTACTCAAGG
ATGGCCGATAACACTAATTGTATGTAGAATAATTCTTGTTGCTGTTTTTT
TTTTACAGTGTTTTCGTCTGTGGGGTTTGTACTGAACGGTGATGTATGTC
TTGTTTTTGCAACTAGTGGAGATAGTCACACGGATCGTTTTGGTGTTCAT
CGCAGCAAAATCCCATTGGCCGTGCATAGCTATTTCGCACAAGGTGGAGG
CGAGTTGATTCTTCGGAGGTTGTATCGTCATTTTTCACCGGCCGAACGAC
CTCCGGCGTCTCTCGTGTGTTGCCGACGCTGGCCATGAATGATCAATGGA
TTTGAGTTGCGGGATCATGAGCGATTCCCGAAATCAAAGTGGTAATGCTA
GGTTTTGATTTTGTGCCAGTTTTACCTTACCAGCTTAAGCTGACTATTAT
AACTGTAACACTGACTGATACTATAACACACCCAGTAATCCAGTTATGTT
CCCACATTCACCCGCCCGGCTCGCTGAAGCCTCCACCACGTCTCAAACAA
TATCCAGTATCCAATGATTGCGAAGTATTTTCGACAATTTTATGAAGCGA
TATAGAGCCAGAAGGCATGGTTTTTGTGCCTTCGGCGGGGCACCTCCAGC
GGGGGCCCCGCATCAGTCGGGGGTGACGTTGCGGCTTCGCCGCTCCCGGT
TAATCGGTCAACTGATTTTCCAATCAGTTCAATCCCATGCAGTGCTGACT
CACACGAACTACGTCCCACGCGTTTTGTAAAACGATTGATGAGTACCTCC
AACTATTCGTATCGTTTGAATATATCTGACTGTGCCTTAACTACGTTTTA
CTATCGTCGTGGTCATGCTTTTGTAGATAAGGCATCAACTTGTCGCCTAT
ATTGTTTTTATATCCACTGATGCCTCGTGTATAGCTGTGAGTGCAAAGTG
GATACCATGGCGTGACATTTTCCCAGTCCTGCGTTATAATCATCATACAG
ACATGTGCTGTAAACACTTGGCAAACTTATATTTCCATGCAGGCTAACGG
TTCTTTTGGGGTTCTTGTGTGGACAGGGGTCTATTCGCCCGTCAGAGTTT
TCGCTGCCGTTTGTACTTTACAGTGGTCCAGCTGTACTCCCTGTTACATG
TAATAGTCGTCTCGTTATTTCCTTCTCGAGCTATTCGATCAGTCCAGGTA
CTCTGCCTTCCTTGGGGCGAGTCGCATGCTATATTACGCAATCGACGTCC
ACGTATGAATGAACGTAGTAGGTGATTGTTTATGCAGTATACTTTTAAGA
TCTAAGTCGTAAGTAATCGCTTTTTGAATGACCATATTTGTCCGTTGGAT
GTGGGCGAATATGTGTCTATGACATGTGATAGAATCGACTGGCGAGCCTG
CACTTGTGCATACACAGATCTTCCCTCCGTCTCCCCCCCCTCTTCCCCCG
CCCTCCTCGCCGCTCCCGATCCTCAAATTCACGGTCAACGTCCATCCAAC
CCAGTGCTTCTGTGGAGTTGCCACCGACGTTTCGTCGCCGGTAGACGACT
CTCAATGCAACGTTAAATGTTTGGGCACTGCAGGGGAGAACTGCGGTGGA
TTCAACCGGTCGTCAACGTACGTGATCGTGTAACGTGATAATAAAGGAAT
AGTTGGAGTTGTGTGCGGGGGTGTTTCTTTATTTCGGAAAAGAGGACGTA
CGTAAGGCAGGTTCTCTAAGCACTGCTAGTGTGTTGTGGTTATCAGCGAT
GATGGTGTCGGGGGAGAGACTGCAACCACCGCACACTGCAGTTTGAAGGC
GACGCAGAATCGATTGATTGGCCCCCGGGCCTACTTCGAGAGTTTCCCTG
CTCGATTTCAGATGTTTTCATCTTCACACACCGAGGACACGGCCCATTGC
TGTGTAATGTATGCCGTCAGCTGGAAGGCATCTTGGACAAACACACGTTG
TTGTTCGTGGTAAAGAATTTGGTCTATAGGGTAGGGTAGGGCGAGCACGA
GATGCATTGGTGACATTTTCTTGTGCACACCTTAGAGAAGCCCCGTGAGT
TCGTTTTTGGTTTATACGTACTAGAGAGTAAGGTCAAGTATGGCCGCAGT
GTTTTTGTGATTGGTCGAAGGTTTCGTAGACACTTTGTTTTTCCCCTCTC
CGCTTCATGTAGCATCCCGTGTGAGACTTTATCTGAAAAACAATTTTTTG
TTGTTTTCGCCAGTATTTTTGTACCACTAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4040:7304..10635+

>mRNA_H-paniculata_contig4040.10456.1 ID=mRNA_H-paniculata_contig4040.10456.1|Name=mRNA_H-paniculata_contig4040.10456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig4040:7304..10635+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTGCAGGCTTCTTTTCGCAGGAGCCCATGTCGGCCGAGATGCGTGC
AGGCTTCTTTTCGCAGGAGCCCATGTCGGCCGAGATCTGCTTCGACCTCT
GCAACGACGGCGTCAACACTCACTTCGCCACCCAGTATGGCTTCGAGATC
TGCTTCGACCTCTGCAACGACGGCGTCAACACTCACTTCGCCACCCAGTA
TGGCTTCGAGTGCTTCTGTGGAGTTGCCACCGACGTTTCGTCGCCGGTAG
ACGACTCTCAATGCAACGTTAAATGTTTGGGCACTGCAGGGGAGAACTGC
GGTGGATTCAACCGGTCGTCAACGTACGTGATCGTGTAATGCTTCTGTGG
AGTTGCCACCGACGTTTCGTCGCCGGTAGACGACTCTCAATGCAACGTTA
AATGTTTGGGCACTGCAGGGGAGAACTGCGGTGGATTCAACCGGTCGTCA
ACGTACGTGATCGTGTAA
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