mRNA_H-paniculata_contig40377.10450.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40377.10450.1
Unique NamemRNA_H-paniculata_contig40377.10450.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40377.10450.1 vs. uniprot
Match: A0A6H5JR35_9PHAE (Riboflavin kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR35_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 6.630e-25
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    4 VTFNAMFGNLWNQAAALERAAEILEESGRIVISHPLGRDFVRQLKGKDDTVVPHELPDQDELLQLV 201
            V FNA+FGNLW+Q AALERAA ILEE G++VISHPLGRDFV +LK  DDTVVPHELP+QD L +LV
Sbjct:  222 VVFNAVFGNLWDQGAALERAANILEEGGKVVISHPLGRDFVSRLKAVDDTVVPHELPEQDALERLV 287
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BLAST of mRNA_H-paniculata_contig40377.10450.1 vs. uniprot
Match: A0A7S2XYQ3_9STRA (Riboflavin kinase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYQ3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.840e-15
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    4 VTFNAMFGNLWNQAAALERAAEILEESGRIVISHPLGRDFVRQLKGKDDTVVPHELPDQDELLQLV 201
            + FNA+FGNLW+Q AAL    E+L   G +VISHP+G  FV+ LK KD+ +VPH LP Q++L  +V
Sbjct:  294 IFFNAVFGNLWDQPAALAHCCELLPTGGNVVISHPMGSTFVKMLKKKDNRLVPHLLPTQEQLEAMV 359
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BLAST of mRNA_H-paniculata_contig40377.10450.1 vs. uniprot
Match: A0A7S3ETG7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ETG7_9EUKA)

HSP 1 Score: 73.9 bits (180), Expect = 2.410e-14
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 VVTFNAMFGNLWNQAAALERAAEILEESGRIVISHPLGRDFVRQLKGKDDTVVPHELPDQDELLQL 198
            VV FNA FGN+++Q AAL  AA +L   G   ISHPLG  FVR+L   D +VVPHELP  + L+ L
Sbjct:   62 VVVFNACFGNMFDQRAALAHAAALLRPGGSAFISHPLGSSFVRELHASDPSVVPHELPSLEALIDL 127
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BLAST of mRNA_H-paniculata_contig40377.10450.1 vs. uniprot
Match: A0A1D2A067_AUXPR (Riboflavin kinase n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A067_AUXPR)

HSP 1 Score: 71.2 bits (173), Expect = 6.790e-13
Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    4 VTFNAMFGNLWNQAAALERAAEILEESGRIVISHPLGRDFVRQLKGKDDTVVPHELPDQDELLQLV 201
            V FNA+FGNL++Q AAL RA ++++  G I ISHPLGR ++++ + ++  VVPHELPD+  L +L+
Sbjct:  179 VFFNAVFGNLYDQHAALLRATQLIQPGGYISISHPLGRAWLQEFRQREPEVVPHELPDEVALQRLI 244
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BLAST of mRNA_H-paniculata_contig40377.10450.1 vs. uniprot
Match: UPI00189416F7 (class I SAM-dependent methyltransferase n=1 Tax=Nocardia transvalensis TaxID=37333 RepID=UPI00189416F7)

HSP 1 Score: 68.6 bits (166), Expect = 1.590e-12
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   13 NAMFGNLWNQAAALERAAEILEESGRIVISHPLGRDFVRQLKGKDDTVVPHELPDQDELLQL 198
            N MFGN+W+Q AAL R AE+L  +GR+VISHPLGR FV  L      +  H LPD   L  L
Sbjct:  125 NGMFGNVWDQEAALGRCAELLSAAGRVVISHPLGRQFVEGLHAAQPEITRHTLPDDRGLATL 186
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BLAST of mRNA_H-paniculata_contig40377.10450.1 vs. uniprot
Match: A0A6G9ZAQ3_9NOCA (Methyltransferase domain-containing protein n=2 Tax=Nocardia terpenica TaxID=455432 RepID=A0A6G9ZAQ3_9NOCA)

HSP 1 Score: 67.8 bits (164), Expect = 2.980e-12
Identity = 32/62 (51.61%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   13 NAMFGNLWNQAAALERAAEILEESGRIVISHPLGRDFVRQLKGKDDTVVPHELPDQDELLQL 198
            N MFGN+W+Q AAL R AE+L   GR+VISHPLGR FV  L      +  H LP  + L  L
Sbjct:  120 NGMFGNVWDQEAALRRCAELLSAEGRVVISHPLGRQFVEGLHAAQPEITRHTLPIDESLTTL 181
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BLAST of mRNA_H-paniculata_contig40377.10450.1 vs. uniprot
Match: A0A2W4K6T9_9BACT (Methyltranfer_dom domain-containing protein n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A2W4K6T9_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 2.230e-11
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    4 VTFNAMFGNLWNQAAALERAAEILEESGRIVISHPLGRDFVRQLKGKDDTVVPHELPDQDEL 189
            V FNA FGNL++Q  AL++   +L   G I+ISHPLG+ FV+ L   D ++VP  LP++D+L
Sbjct:  120 VFFNACFGNLFDQKMALQKTQALLRAGGSIIISHPLGKRFVKALHDSDPSIVPFFLPEKDQL 181
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BLAST of mRNA_H-paniculata_contig40377.10450.1 vs. uniprot
Match: A0A836Q1M4_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A836Q1M4_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.200e-10
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    4 VTFNAMFGNLWNQAAALERAAEILEESGRIVISHPLGRDFVRQLKGKDDTVVPHELPDQDEL 189
            V FNA FGNL++Q  AL++   +L   G I+ISHPLG+ FV+ L   D  +VP  LP++++L
Sbjct:  120 VFFNACFGNLFDQKMALQKTGALLRSGGCIIISHPLGKRFVKALHDSDPAIVPFFLPEKEQL 181
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BLAST of mRNA_H-paniculata_contig40377.10450.1 vs. uniprot
Match: A0A7S0TD25_9STRA (Riboflavin kinase n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TD25_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.930e-10
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   10 FNAMFGNLWNQAAALERAAEILEESGRIVISHPLGRDFVRQLKGKDDTVVPHELP 174
            FNA FGNL++Q A+L  AA ++   G ++ +HPLG DFV +L+ +D +VVPH LP
Sbjct:  175 FNACFGNLFDQRASLAAAAAVVRPGGVVLATHPLGADFVDELRARDASVVPHSLP 229
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BLAST of mRNA_H-paniculata_contig40377.10450.1 vs. uniprot
Match: W7TGE0_9STRA (Riboflavin kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGE0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.490e-10
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    4 VTFNAMFGNLWNQAAALERAAEILEESGRIVISHPLGRDFVRQLKGKDDTVVPHELP 174
            V FNA FGN+++QA AL    +++++ GR+VISHPLG DFV +L+ +  +VV  +LP
Sbjct:   46 VFFNACFGNVFDQARALREVGKLVKKGGRVVISHPLGADFVEELRRRSPSVVLADLP 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40377.10450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JR35_9PHAE6.630e-2575.76Riboflavin kinase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S2XYQ3_9STRA4.840e-1553.03Riboflavin kinase n=1 Tax=Fibrocapsa japonica TaxI... [more]
A0A7S3ETG7_9EUKA2.410e-1454.55Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A1D2A067_AUXPR6.790e-1350.00Riboflavin kinase n=1 Tax=Auxenochlorella protothe... [more]
UPI00189416F71.590e-1253.23class I SAM-dependent methyltransferase n=1 Tax=No... [more]
A0A6G9ZAQ3_9NOCA2.980e-1251.61Methyltransferase domain-containing protein n=2 Ta... [more]
A0A2W4K6T9_9BACT2.230e-1148.39Methyltranfer_dom domain-containing protein n=1 Ta... [more]
A0A836Q1M4_9BACT1.200e-1046.77Class I SAM-dependent methyltransferase n=1 Tax=Ca... [more]
A0A7S0TD25_9STRA1.930e-1050.91Riboflavin kinase n=1 Tax=Chrysocystis fragilis Ta... [more]
W7TGE0_9STRA6.490e-1049.12Riboflavin kinase n=1 Tax=Nannochloropsis gaditana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40377contigH-paniculata_contig40377:1000..1681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue5.3e-18
Seed eggNOG ortholog2880.D8LGN9
Preferred nameRFK
KEGG rclassRC00002,RC00017
KEGG koko:K00861
KEGG ReactionR00549
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006771,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008531,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009124,GO:0009156,GO:0009161,GO:0009165,GO:0009231,GO:0009259,GO:0009260,GO:0009398,GO:0009893,GO:0009987,GO:0012501,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0033860,GO:0033864,GO:0034641,GO:0034654,GO:0042364,GO:0042726,GO:0042727,GO:0043085,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046444,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0050789,GO:0050790,GO:0051186,GO:0051188,GO:0051341,GO:0051353,GO:0055086,GO:0065007,GO:0065009,GO:0071704,GO:0072593,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.riboflavin kinase activity
EggNOG OGsCOG0196@1,KOG3110@2759
EC2.7.1.26
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size201
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40377.10450.1prot_H-paniculata_contig40377.10450.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40377 1018..1681 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930235.7859988-UTR-H-paniculata_contig40377:999..10171622930235.7859988-UTR-H-paniculata_contig40377:999..1017Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40377 1000..1017 +
1691481203.6840422-UTR-H-paniculata_contig40377:999..10171691481203.6840422-UTR-H-paniculata_contig40377:999..1017Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40377 1000..1017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930235.8046432-CDS-H-paniculata_contig40377:1017..10771622930235.8046432-CDS-H-paniculata_contig40377:1017..1077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40377 1018..1077 +
1691481203.7125192-CDS-H-paniculata_contig40377:1017..10771691481203.7125192-CDS-H-paniculata_contig40377:1017..1077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40377 1018..1077 +
1622930235.8196402-CDS-H-paniculata_contig40377:1558..16811622930235.8196402-CDS-H-paniculata_contig40377:1558..1681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40377 1559..1681 +
1691481203.7216637-CDS-H-paniculata_contig40377:1558..16811691481203.7216637-CDS-H-paniculata_contig40377:1558..1681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40377 1559..1681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40377.10450.1

>prot_H-paniculata_contig40377.10450.1 ID=prot_H-paniculata_contig40377.10450.1|Name=mRNA_H-paniculata_contig40377.10450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MFGNLWNQAAALERAAEILEESGRIVISHPLGRDFVRQLKGKDDTVVPHE
LPDQDELLQLV
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mRNA from alignment at H-paniculata_contig40377:1000..1681+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40377.10450.1 ID=mRNA_H-paniculata_contig40377.10450.1|Name=mRNA_H-paniculata_contig40377.10450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=682bp|location=Sequence derived from alignment at H-paniculata_contig40377:1000..1681+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTGACGTTTAATGCTATGTTCGGGAACCTGTGGAACCAAGCGGCGGC
TTTGGAACGTGCTGCGGAAATTTTGGAGGTGCTAGTATTGAGTGGGAACA
GGCTCTTGTTTTTCTTCTTTTTTTTCTTTTTTTTTTTCTTTTTTTTTCTG
TCTTTATTGTCGTTTTTGGTGTTTGCCTTGTTTGCCTTGTTTGTCTCGTT
TTGTCTCGTTTTGTCTCGTTTGTTTGTCCGTCCTTCTGTCTGTCTGTAGG
TCGCCTTCCCTCTTCTCAGAACACATTGCATTCGTTAAGTCTGCGTGTGT
TTAGTTAGCTCCACGCAACAAGATTTGTACTGCAAAACGTGTTGCTCCTC
GAATCTGGTTTGATCTCTCGCTTTCTATATTTTCGAATTCATTTTTTTTG
GTACTCCTCAAGACTGATGATGGTGGTGATGATGATGGCGTTGCTTTCGG
AACAATTTCCATTATCATTCCAACCGTTTTTTTTTTTTTTTTCTGAAGTG
TAACCACGCCACTGATACTTACGTACACACTATTTGACAAACAATCGTGT
TGTTTCCAGGAAAGTGGCAGGATCGTGATATCGCACCCTCTCGGGAGGGA
CTTCGTTCGCCAGTTGAAGGGTAAGGACGACACGGTCGTGCCGCACGAAC
TTCCGGATCAAGACGAGTTGCTGCAGTTGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig40377:1000..1681+

>mRNA_H-paniculata_contig40377.10450.1 ID=mRNA_H-paniculata_contig40377.10450.1|Name=mRNA_H-paniculata_contig40377.10450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig40377:1000..1681+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGGGAACCTGTGGAACCAAGCGGCGGCTTTGGAACGTGCTGCGGA
AATTTTGGAGATGTTCGGGAACCTGTGGAACCAAGCGGCGGCTTTGGAAC
GTGCTGCGGAAATTTTGGAGGAAAGTGGCAGGATCGTGATATCGCACCCT
CTCGGGAGGGACTTCGTTCGCCAGTTGAAGGGTAAGGACGACACGGTCGT
GCCGCACGAACTTCCGGATCAAGACGAGTTGCTGCAGTTGGTAGAAAGTG
GCAGGATCGTGATATCGCACCCTCTCGGGAGGGACTTCGTTCGCCAGTTG
AAGGGTAAGGACGACACGGTCGTGCCGCACGAACTTCCGGATCAAGACGA
GTTGCTGCAGTTGGTA
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