mRNA_H-paniculata_contig4034.10444.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4034.10444.1 vs. uniprot
Match: A0A6H5JHV6_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV6_9PHAE) HSP 1 Score: 399 bits (1025), Expect = 1.500e-121 Identity = 300/696 (43.10%), Postives = 357/696 (51.29%), Query Frame = 1
Query: 76 AVAGRNKLIGVCRISSTQLRHLGSSTVPADLYLRDPKGAWLWGRRGTIRVAVSLERLQANIVKTALHPSKAPI-GVPLGAGVGAGGVALAAQKEAKGEDS-PPAELSCKVLWNGQDFSTPSRWDKVFCITADNNQLWLDIRLHDPNLPRPTPSSYISAMQAAGPEDECEGQRHAPPPSRARSVASVIFKDARPYSRKDAGAAGYKDRRDRVAVMELSIGAAGGEEGGRRRGSGGRGSSYPSPAALSNGISDISTAGEGDDEVLGVASADATEGSPAYPTNEASLTRQRSDASADDSFVVVNATEAASPHPREELGTRA--------GSLAVASSPCAAPPNLSPLRYDLLPMSRALGVPACAGAAAASQAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAVATAGVGALXXXXXXXXXXXXXXXXVKTSSRSGERDGPAAVASEGVREDAMFTGKSPVAAMAAAVVAAGTSAVRSRIMPKQTSAVTECWDIDRSCILKMGGLLTLSTFDAQGIADMLNSREESMERMANTKEWHEMGFRVHWDSTKRRFAILNVSRASFVLRGSCSSMATELLGFGKGDYVSSPVAEALLDPQHPSDPPRRHMAVVGDLIPPPLLRPQWMRTAWGPPAMEIFRGGELRVQVWARQPAASILRPIHRRRRRRSVIGKLVQADDGSWLVGTALLDAAEVGR 2133
AV G ++LIGVCRISS++LR LGSSTVPADL LRDP+G W RGTIR+AVSLERLQANI++ AL P++A + GVP G V A EAKGE++ PP ELSCKVLWNG DFS+PSRWDKVFC+TA NNQLWLDIR P S+ + ++ R PPP A A V+ +S G A R + +A +E +S AG + + ++ SP + + A REE TR G + P A PN R D PA A A S ++ TA XXXXXXXXXXXXXXX +G AVA R A R ++ + V W RSCIL +G LSTFDAQG+ADMLNS E+S ERMA TKEWHE GFR+HWD +RRF ILNVSR SFVLRG+CSS+AT LLGF + D+ S PVAEA+LDPQHPSDPPRRHM + GD +P PLLRP WMR WGPPAMEI RGGELRVQVW+RQP LR + RRRRRRS IG Q++DG+ LVGTA+LD+AEV R
Sbjct: 164 AVIGGDRLIGVCRISSSELRRLGSSTVPADLKLRDPRGLWWGSSRGTIRIAVSLERLQANIIRAALPPNRASVLGVPEG-------VTRTASGEAKGEETAPPTELSCKVLWNGHDFSSPSRWDKVFCMTAANNQLWLDIRA----APDLVNSAGLRPARS----------RKGPPPVDAVDGADVLVPPPEGHSTAVEGTAAAVRRSEAIAPVETVAXXX---------------XXXXXXXXXXXXXXVVSPAG------TPLETLESPAASPLSGQRQRXXXXXXXXXXXXXXXXXXGSEPARRISEREEGETREHKTEAARKGRRGARAIPSAGTPNP---RED----------PAGASEEARSSSE--------------------------------------TAAAAVAPXXXXXXXXXXXXXXXXXXXXXXXXLEGVLAVARSAARPAAR------------------------REHRRRAAVVDNTWAGSRSCILTVGLAYHLSTFDAQGLADMLNSEEKSTERMAGTKEWHEKGFRLHWDPVRRRFTILNVSRRSFVLRGACSSLATALLGFREKDHFSKPVAEAVLDPQHPSDPPRRHMGITGDTVPLPLLRPHWMRIVWGPPAMEITRGGELRVQVWSRQPTGPTLRSLQRRRRRRSSIGCAGQSEDGASLVGTAVLDSAEVSR 742
BLAST of mRNA_H-paniculata_contig4034.10444.1 vs. uniprot
Match: D7FSM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM2_ECTSI) HSP 1 Score: 343 bits (880), Expect = 2.330e-105 Identity = 249/692 (35.98%), Postives = 287/692 (41.47%), Query Frame = 1
Query: 55 ALQRVHTAVAGRNKLIGVCRISSTQLRHLGSSTVPADLYLRDPKGAWLWGRRGTIRVAVSLERLQANIVKTALHPSKAPI-GVPLGAGVGAGGVALAAQKEAKGEDS-PPAELSCKVLWNGQDFSTPSRWDKVFCITADNNQLWLDIRLHDPNLPRPTPSSYISAMQAAGPEDECEGQRHAPPPSRARSVASVIFKDARPYSRKDAGAAGYKDRRDRVAVMELSIGAAGGEEGGRRRGSGGRGSSYPSPAALSNGISDISTAGEGDDEVLGVASADATEGSPAYPTNEASLTRQRSDASADDSFVVVNATEAASPHPREELGTRAGSLAVASSPCAAPPNLSPLRYDLLPMSRALGVPACAGAAAASQAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAVATAGVGALXXXXXXXXXXXXXXXXVKTSSRSGERDGPAAVASEGVREDAMFTGKSPVAAMAAAVVAAGTSAVRSRIMPKQTSAVTECWDIDRSCILKMGGLLTLSTFDAQGIADMLNSREESMERMANTKEWHEMGFRVHWDSTKRRFAILNVSRASFVLRGSCSSMATELLGFGKGDYVSSPVAEALLDPQHPSDPPRRHMAVVGDLIPPPLLRPQWMRTAWGPPAMEIFRGGELRVQVWARQPAASILRPIHRRRRRRSVIGKLVQADDGSWLVGTALLDAAE 2124
AL+RV AV G ++LIGVCRISS++LR LGSSTVPADL LRDP+G+W RGTIR+AVSLERLQANI++ AL P +A + GVP G V A EAKGE++ PP ELSCKVLWNG DFS+PSRWDKVFC+T NNQLWLD ISA ARP +R++ +R R AV+E + W RSCIL +G LSTFDAQG+ADMLNS E S ERMA TKEWH+ GFR+HWD +RRF ILNVSR SFVLRG CSS+AT LLGF + D+ S PVAEA+LDPQHPSDPPRRHM + GD +P PLLRP WMR WGPPAMEI RGGELRVQVW+RQP ILR RRRRRRS IG Q++DGS LVGTA+LD+AE
Sbjct: 27 ALRRVQGAVIGGDRLIGVCRISSSELRGLGSSTVPADLKLRDPRGSWWGSSRGTIRIAVSLERLQANIIRAALPPKRASVLGVPEG-------VTRTASSEAKGEEAAPPTELSCKVLWNGHDFSSPSRWDKVFCMTLANNQLWLD----------------ISA--------------------------------ARPAARRE--------QRRRAAVVENT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WAGSRSCILTVGLAYHLSTFDAQGLADMLNSEETSTERMAGTKEWHDKGFRLHWDPVRRRFTILNVSRRSFVLRGGCSSLATALLGFREKDHFSKPVAEAVLDPQHPSDPPRRHMGITGDTVPLPLLRPHWMRIVWGPPAMEITRGGELRVQVWSRQPTGPILRSQQRRRRRRSAIGCAGQSEDGSSLVGTAVLDSAE 385
BLAST of mRNA_H-paniculata_contig4034.10444.1 vs. uniprot
Match: D7FSM1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSM1_ECTSI) HSP 1 Score: 282 bits (722), Expect = 5.670e-78 Identity = 180/338 (53.25%), Postives = 207/338 (61.24%), Query Frame = 1
Query: 2119 AEVGRLATNGRSTKLPLLSPTAVWKYERSKGANGSAYPVPQSSIRSANRRDASSN----LWGGLGPWW--LKAPASMLSRQRQKWRRLKRRIAGQGAVD---KSTPLGTGGAYVWWGFHPRC------------RRLGLVRRSLDLLEMERSGGGAEEEPSGSEADLISSRSDGAYNLQEGEGGGDETG----GGVVGHVWLSLKLRDPSILLMRVVRQWNMARDEASVQQRRVAQAEAKRLWMLMPGISLWRVLVQLIGISLLVSYCVTLTLRAYHSTSCRATFGCQEETDPKLASLREWQTLADNLLSAVSFLDMLLQFRTAYVDNKTKIVTSPKK 3057
+EV RLAT G++T+LPLLSP+A+W+YERSK A + G G W + AP + L+RQRQ+ RRLKRRIA G + ++TPLG RR G +GGG G L S A + EGE G GGVVGHVW+SLKLRDPS+L+MRVVRQWNMARDEASVQQRR AQ EAKRLWM MPGISLWRVL+QL G+SLLVSYCVTLTLRA+HST CRA F C ETDPKLASLREWQTLADN+LSA+SFLDMLLQFRT YVD +KI+ PKK
Sbjct: 39 SEVCRLAT-GKTTRLPLLSPSALWQYERSKSAXXXXXXXXXXXXXXXXXXXXXXXXVLPVANGAGFWLAVVTAPRAFLARQRQRLRRLKRRIAAAGGAENGYRTTPLGAXXXXXXXXXXXXXXXXXXXXXXXXSRRHGSRAGGPGESMATPTGGGKHLRGRGDLWRLASGGDTAAVSPVEGEAGPAAAAAAARGGVVGHVWVSLKLRDPSMLMMRVVRQWNMARDEASVQQRRAAQLEAKRLWMFMPGISLWRVLLQLAGMSLLVSYCVTLTLRAFHSTRCRAAFNCDPETDPKLASLREWQTLADNMLSALSFLDMLLQFRTGYVDKNSKIIIDPKK 375 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4034.10444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4034.10444.1 >prot_H-paniculata_contig4034.10444.1 ID=prot_H-paniculata_contig4034.10444.1|Name=mRNA_H-paniculata_contig4034.10444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1019bp DDRLFDVSFVARRFYQIKALQRVHTAVAGRNKLIGVCRISSTQLRHLGSSback to top mRNA from alignment at H-paniculata_contig4034:832..15557- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4034.10444.1 ID=mRNA_H-paniculata_contig4034.10444.1|Name=mRNA_H-paniculata_contig4034.10444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14726bp|location=Sequence derived from alignment at H-paniculata_contig4034:832..15557- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4034:832..15557- >mRNA_H-paniculata_contig4034.10444.1 ID=mRNA_H-paniculata_contig4034.10444.1|Name=mRNA_H-paniculata_contig4034.10444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6114bp|location=Sequence derived from alignment at H-paniculata_contig4034:832..15557- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |