mRNA_H-paniculata_contig4033.10442.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4033.10442.1
Unique NamemRNA_H-paniculata_contig4033.10442.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4033.10442.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.660e-26
Identity = 63/104 (60.58%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:    1 YRKVAMENDEVIVGVFLPN-----------PRPRQFEFVRPFKQARRREDDISIVTAGMRVRLEPKSQDANGGXXXGAMKWIVAEAGLCFGGMAATTLAAPRTE 279
            YRKVAME DEVIV VFLPN           P P  FEF+RPFKQARRREDDISIVT G+R+ LEP+     GG      KWIV +  +CFGGMA TT+AAP TE
Sbjct:  493 YRKVAMEEDEVIVAVFLPNAASKXXXXXXSPPPSTFEFIRPFKQARRREDDISIVTGGIRLMLEPR-----GG------KWIVMDTSMCFGGMAPTTVAAPLTE 585
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BLAST of mRNA_H-paniculata_contig4033.10442.1 vs. uniprot
Match: A0A6H5JRC2_9PHAE (Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC2_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.910e-24
Identity = 62/104 (59.62%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    1 YRKVAMENDEVIVGVFLPNP-----------RPRQFEFVRPFKQARRREDDISIVTAGMRVRLEPKSQDANGGXXXGAMKWIVAEAGLCFGGMAATTLAAPRTE 279
            YRKVAME DEVIV VFLPN             P  FEF+RPFKQARRREDDISIVT G+R+ LE +     GG      KW+V EA +CFGGMA TT+AAP TE
Sbjct:  494 YRKVAMEEDEVIVAVFLPNAVSEKGNDSQSSPPSTFEFIRPFKQARRREDDISIVTGGIRLVLETR-----GG------KWVVKEASMCFGGMAPTTVAAPLTE 586
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BLAST of mRNA_H-paniculata_contig4033.10442.1 vs. uniprot
Match: W7TFQ7_9STRA (Xanthine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.040e-19
Identity = 56/94 (59.57%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 YRKVAMENDEVIVGVFLPNPRPRQFEFVRPFKQARRREDDISIVTAGMRVRLEP-KSQDANGGXXXGAMKWIVAEAGLCFGGMAATTLAAPRTE 279
            YRKV M  DEVI  + LP P  R FEFV P+KQARRREDDISIVTA +RVRL P  S+ A G       +W++ EAG  FGGMA TT+AA +TE
Sbjct:  463 YRKVDMLEDEVIKTITLPFPASR-FEFVGPYKQARRREDDISIVTACLRVRLVPVASRSAEG-------RWVIEEAGFGFGGMAPTTVAAQKTE 548
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BLAST of mRNA_H-paniculata_contig4033.10442.1 vs. uniprot
Match: R1EFE6_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EFE6_EMIHU)

HSP 1 Score: 90.5 bits (223), Expect = 3.610e-19
Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 YRKVAMENDEVIVGVFLPNPRPRQFEFVRPFKQARRREDDISIVTAGMRVRLEPKSQDANGGXXXGAMKWIVAEAGLCFGGMAATTLAAPRT 276
            YR+VA+E DEVIV  F+P+  P   EFVRP+KQARRREDDISIV+  +RVRLEP  ++  G        W+V++A L +GG+A T + A +T
Sbjct:  338 YRRVALEPDEVIVSFFVPHCAP--LEFVRPYKQARRREDDISIVSCALRVRLEPAQREGRG-------VWVVSDAALAYGGLAPTAVLAAKT 420
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BLAST of mRNA_H-paniculata_contig4033.10442.1 vs. uniprot
Match: A0A5D6XJE5_9STRA (Uncharacterized protein n=3 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJE5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.710e-18
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    1 YRKVAMENDEVIVGVFLPNPRPRQFEFVRPFKQARRREDDISIVTAGMRVRLEPKSQDANGGXXXGAMKWIVAEAGLCFGGMAATTLAAPRTE 279
            YRKV + +DEVIV V++P  RP  +EF+ PFKQARRREDDISIVTAG+RV+L+       G    GA  W++A+A + +GGMA  T AA RTE
Sbjct:  455 YRKVDLASDEVIVSVYVPFTRP--WEFMLPFKQARRREDDISIVTAGIRVQLD-------GAASAGA--WVIADASVVYGGMAPMTKAAARTE 536
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BLAST of mRNA_H-paniculata_contig4033.10442.1 vs. uniprot
Match: V9TG24_9ERIC (Xanthinine dehydrogenase (Fragment) n=10 Tax=Monotropeae TaxID=217039 RepID=V9TG24_9ERIC)

HSP 1 Score: 82.8 bits (203), Expect = 2.710e-18
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    1 YRKVAMENDEVIVGVFLPNPRPRQFEFVRPFKQARRREDDISIVTAGMRVRLEPKSQDANGGXXXGAMKWIVAEAGLCFGGMAATTLAAPRTE 279
            YRKV + +DE+++ +FLP  RP  FEFV+ FKQA RR+DDI+IV AGMRV LE K    NG       KW+V++A + +GG+A  +++A +T+
Sbjct:   46 YRKVGLASDEILLSIFLPWTRP--FEFVKEFKQAHRRDDDIAIVNAGMRVFLEEK----NG-------KWVVSDASIAYGGVAPLSISAAKTK 125
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BLAST of mRNA_H-paniculata_contig4033.10442.1 vs. uniprot
Match: A0A1B2FQV2_9ERIC (Xanthine dehydrogenase (Fragment) n=2 Tax=Hemitomes congestum TaxID=176246 RepID=A0A1B2FQV2_9ERIC)

HSP 1 Score: 82.4 bits (202), Expect = 1.690e-17
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    1 YRKVAMENDEVIVGVFLPNPRPRQFEFVRPFKQARRREDDISIVTAGMRVRLEPKSQDANGGXXXGAMKWIVAEAGLCFGGMAATTLAAPRTE 279
            YRKV + +DE+++ +FLP  RP  FEFV+ FKQA RR+DDI+IV AGMRV LE K    NG       KWIV++A + +GG+A  +++A +T+
Sbjct:  111 YRKVDLASDEILLSIFLPWTRP--FEFVKEFKQAHRRDDDIAIVNAGMRVFLEEK----NG-------KWIVSDASIAYGGVAPLSISAAKTK 190
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BLAST of mRNA_H-paniculata_contig4033.10442.1 vs. uniprot
Match: A0A1B2FQZ1_ENKCH (Xanthine dehydrogenase (Fragment) n=3 Tax=Enkianthus TaxID=13507 RepID=A0A1B2FQZ1_ENKCH)

HSP 1 Score: 84.7 bits (208), Expect = 2.250e-17
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    1 YRKVAMENDEVIVGVFLPNPRPRQFEFVRPFKQARRREDDISIVTAGMRVRLEPKSQDANGGXXXGAMKWIVAEAGLCFGGMAATTLAAPRTE 279
            YRKV + +DE+++ +FLP  RP  FEFV+ FKQA RR+DDI+IV AGMRV LE K++           KW+V++A + +GG+A  +L+A +T+
Sbjct:  264 YRKVDLASDEILLSIFLPWTRP--FEFVKEFKQAHRRDDDIAIVNAGMRVYLEEKNE-----------KWVVSDASIAYGGVAPLSLSAAKTQ 343
[Close]
BLAST of mRNA_H-paniculata_contig4033.10442.1 vs. uniprot
Match: F1LJZ9_9ERIC (Xanthine dehydrogenase (Fragment) n=1 Tax=Maesa myrsinoides TaxID=85226 RepID=F1LJZ9_9ERIC)

HSP 1 Score: 84.7 bits (208), Expect = 2.270e-17
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    1 YRKVAMENDEVIVGVFLPNPRPRQFEFVRPFKQARRREDDISIVTAGMRVRLEPKSQDANGGXXXGAMKWIVAEAGLCFGGMAATTLAAPRTE 279
            YRKV M ++E+++ VFLP  RP  FEFV+ FKQA RR+DDI+IV AGMRVRLE K+++           W+V++A + +GG+A  +L+A +T+
Sbjct:  261 YRKVDMASNEILLSVFLPWTRP--FEFVKAFKQAHRRDDDIAIVNAGMRVRLEEKNEN-----------WVVSDASIAYGGVAPISLSAVKTK 340
[Close]
BLAST of mRNA_H-paniculata_contig4033.10442.1 vs. uniprot
Match: F1LK30_FOUSP (Xanthine dehydrogenase (Fragment) n=2 Tax=Fouquieria TaxID=13532 RepID=F1LK30_FOUSP)

HSP 1 Score: 84.3 bits (207), Expect = 3.830e-17
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    1 YRKVAMENDEVIVGVFLPNPRPRQFEFVRPFKQARRREDDISIVTAGMRVRLEPKSQDANGGXXXGAMKWIVAEAGLCFGGMAATTLAAPRTE 279
            YRKV +E++E+++ +FLP  RP  FEFV+ FKQA RREDDI++V AGMRV LE K++           KW+V++A + +GG+A  +L+A +T+
Sbjct:  296 YRKVDLESNEILLSIFLPWTRP--FEFVKEFKQAHRREDDIALVNAGMRVCLEEKNE-----------KWVVSDASIVYGGVAPLSLSATKTK 375
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4033.10442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4V3_ECTSI4.660e-2660.58Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
A0A6H5JRC2_9PHAE1.910e-2459.62Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP... [more]
W7TFQ7_9STRA1.040e-1959.57Xanthine dehydrogenase n=2 Tax=Monodopsidaceae Tax... [more]
R1EFE6_EMIHU3.610e-1952.17Uncharacterized protein n=3 Tax=Emiliania huxleyi ... [more]
A0A5D6XJE5_9STRA1.710e-1855.91Uncharacterized protein n=3 Tax=Pythium brassicum ... [more]
V9TG24_9ERIC2.710e-1848.39Xanthinine dehydrogenase (Fragment) n=10 Tax=Monot... [more]
A0A1B2FQV2_9ERIC1.690e-1749.46Xanthine dehydrogenase (Fragment) n=2 Tax=Hemitome... [more]
A0A1B2FQZ1_ENKCH2.250e-1747.31Xanthine dehydrogenase (Fragment) n=3 Tax=Enkianth... [more]
F1LJZ9_9ERIC2.270e-1748.39Xanthine dehydrogenase (Fragment) n=1 Tax=Maesa my... [more]
F1LK30_FOUSP3.830e-1747.31Xanthine dehydrogenase (Fragment) n=2 Tax=Fouquier... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4033contigH-paniculata_contig4033:16186..16464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue5.3e-19
Seed eggNOG ortholog2880.D7G4V3
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size279
Cds size264
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930234.8996806-UTR-H-paniculata_contig4033:16185..162001622930234.8996806-UTR-H-paniculata_contig4033:16185..16200Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4033 16186..16200 +
1691481203.2778208-UTR-H-paniculata_contig4033:16185..162001691481203.2778208-UTR-H-paniculata_contig4033:16185..16200Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4033 16186..16200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930234.9128864-CDS-H-paniculata_contig4033:16200..164641622930234.9128864-CDS-H-paniculata_contig4033:16200..16464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4033 16201..16464 +
1691481203.2889173-CDS-H-paniculata_contig4033:16200..164641691481203.2889173-CDS-H-paniculata_contig4033:16200..16464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4033 16201..16464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4033.10442.1prot_H-paniculata_contig4033.10442.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4033 16201..16464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4033.10442.1

>prot_H-paniculata_contig4033.10442.1 ID=prot_H-paniculata_contig4033.10442.1|Name=mRNA_H-paniculata_contig4033.10442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MENDEVIVGVFLPNPRPRQFEFVRPFKQARRREDDISIVTAGMRVRLEPK
SQDANGGGGGGAMKWIVAEAGLCFGGMAATTLAAPRTE
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mRNA from alignment at H-paniculata_contig4033:16186..16464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4033.10442.1 ID=mRNA_H-paniculata_contig4033.10442.1|Name=mRNA_H-paniculata_contig4033.10442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig4033:16186..16464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCGTAAAGTTGCCATGGAAAATGACGAAGTCATCGTAGGGGTGTTCTT
GCCGAATCCACGTCCTCGCCAGTTCGAGTTCGTGCGACCATTCAAGCAGG
CTAGGCGTCGCGAGGACGACATTTCCATCGTGACCGCGGGTATGCGTGTC
AGACTTGAGCCTAAGAGTCAAGATGCCAATGGGGGTGGTGGGGGAGGTGC
GATGAAATGGATCGTGGCGGAAGCTGGGTTGTGCTTCGGGGGCATGGCTG
CGACTACTCTCGCCGCACCGAGGACAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4033:16186..16464+

>mRNA_H-paniculata_contig4033.10442.1 ID=mRNA_H-paniculata_contig4033.10442.1|Name=mRNA_H-paniculata_contig4033.10442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig4033:16186..16464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAATGACGAAGTCATCGTAGGGGTGTTCTTGCCGAATCCACGTCC
TCGCCAGTTCGAGTTCGTGCGACCATTCAAGCAGGCTAGGCGTCGCGAGG
ACGACATTTCCATCGTGACCGCGGGTATGCGTGTCAGACTTGAGCCTAAG
AGTCAAGATGCCAATGGGGGTGGTGGGGGAGGTGCGATGAAATGGATCGT
GGCGGAAGCTGGGTTGTGCTTCGGGGGCATGGCTGCGACTACTCTCGCCG
CACCGAGGACAGAGATGGAAAATGACGAAGTCATCGTAGGGGTGTTCTTG
CCGAATCCACGTCCTCGCCAGTTCGAGTTCGTGCGACCATTCAAGCAGGC
TAGGCGTCGCGAGGACGACATTTCCATCGTGACCGCGGGTATGCGTGTCA
GACTTGAGCCTAAGAGTCAAGATGCCAATGGGGGTGGTGGGGGAGGTGCG
ATGAAATGGATCGTGGCGGAAGCTGGGTTGTGCTTCGGGGGCATGGCTGC
GACTACTCTCGCCGCACCGAGGACAGAG
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